Wall clock time and date at job start Tue Mar 31 2020 07:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 120.00026 * 2 1 4 4 H 1.48496 * 109.47021 * 239.99924 * 3 2 1 5 5 H 1.48500 * 109.46924 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46812 * 119.99745 * 3 2 1 7 7 C 1.38808 * 119.99716 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99622 * 186.16510 * 7 2 1 9 9 N 1.36933 * 120.00132 * 6.17690 * 7 2 1 10 10 C 1.46500 * 120.00339 * 43.08706 * 9 7 2 11 11 C 1.50697 * 109.47261 * 95.83140 * 10 9 7 12 12 C 1.37893 * 119.93264 * 98.87044 * 11 10 9 13 13 C 1.39648 * 119.86466 * 180.02562 * 12 11 10 14 14 C 1.47657 * 120.14130 * 179.71932 * 13 12 11 15 15 O 1.21485 * 119.99843 * 0.02562 * 14 13 12 16 16 O 1.34722 * 120.00154 * 179.97438 * 14 13 12 17 17 C 1.39691 * 119.72763 * 359.97438 * 13 12 11 18 18 C 1.37863 * 119.85614 * 359.95278 * 17 13 12 19 19 C 1.38505 * 119.92861 * 278.84462 * 11 10 9 20 20 Cl 1.73597 * 119.86542 * 0.02562 * 19 11 10 21 21 C 1.46499 * 119.99780 * 223.08484 * 9 7 2 22 22 C 1.53002 * 117.49963 * 3.47299 * 21 9 7 23 23 C 1.52997 * 117.50146 * 294.84789 * 21 9 7 24 24 H 0.97004 * 119.99581 * 5.00044 * 1 2 3 25 25 H 1.09002 * 109.46991 * 335.83129 * 10 9 7 26 26 H 1.08995 * 109.46957 * 215.83160 * 10 9 7 27 27 H 1.07998 * 120.07258 * 0.02562 * 12 11 10 28 28 H 0.96706 * 116.99862 * 180.02562 * 16 14 13 29 29 H 1.08001 * 120.07346 * 179.97438 * 17 13 12 30 30 H 1.08011 * 119.92752 * 180.02562 * 18 17 13 31 31 H 1.09000 * 115.55091 * 149.17877 * 21 9 7 32 32 H 1.09000 * 117.49631 * 359.97438 * 22 21 9 33 33 H 1.08999 * 117.50115 * 145.02156 * 22 21 9 34 34 H 1.09003 * 117.50206 * 214.97697 * 23 21 9 35 35 H 1.09002 * 117.49801 * 0.02562 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0855 -1.2048 0.1010 9 7 1.3315 -2.3846 -0.1265 10 6 0.2490 -2.5064 -1.1062 11 6 0.7868 -3.1142 -2.3760 12 6 0.6145 -4.4602 -2.6212 13 6 1.1138 -5.0221 -3.7981 14 6 0.9383 -6.4639 -4.0640 15 8 0.3580 -7.1639 -3.2582 16 8 1.4207 -7.0030 -5.2005 17 6 1.7849 -4.2156 -4.7204 18 6 1.9493 -2.8710 -4.4644 19 6 1.4525 -2.3196 -3.2946 20 17 1.6653 -0.6260 -2.9787 21 6 1.6878 -3.5280 0.7172 22 6 2.7711 -3.3141 1.7763 23 6 3.0763 -4.1416 0.5261 24 1 -0.4850 0.8369 -0.0732 25 1 -0.1596 -1.5189 -1.3208 26 1 -0.5366 -3.1447 -0.7021 27 1 0.0945 -5.0786 -1.9046 28 1 1.2811 -7.9510 -5.3305 29 1 2.1737 -4.6444 -5.6322 30 1 2.4676 -2.2462 -5.1770 31 1 0.8687 -4.2035 0.9640 32 1 3.2189 -2.3227 1.8450 33 1 2.6648 -3.8488 2.7202 34 1 3.1708 -5.2207 0.6475 35 1 3.7248 -3.6942 -0.2272 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610623225.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:47 Heat of formation + Delta-G solvation = -38.430256 kcal Electronic energy + Delta-G solvation = -21705.178721 eV Core-core repulsion = 18308.943223 eV Total energy + Delta-G solvation = -3396.235498 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.41714 -39.97051 -38.50347 -37.13818 -37.00512 -35.43038 -33.47313 -32.01140 -31.31611 -27.46890 -25.66685 -25.39249 -22.96086 -22.82580 -22.05276 -21.41196 -19.00041 -18.59302 -17.88295 -17.33112 -17.20333 -16.63989 -16.30369 -16.19626 -15.61196 -15.37548 -14.95190 -14.46062 -14.20625 -14.03175 -13.48650 -13.34524 -12.98905 -12.77337 -12.76486 -12.60475 -12.30238 -12.24508 -12.18197 -12.11846 -11.90603 -11.71443 -11.31808 -11.21543 -10.91347 -10.33790 -9.90195 -9.60404 -8.38713 -7.70093 -5.45542 -0.39665 0.35371 1.29499 1.43579 1.47592 1.49159 1.57820 2.06318 2.48704 2.70982 3.28173 3.46678 3.64172 3.80435 3.91358 4.15674 4.23500 4.30454 4.42387 4.50463 4.58734 4.67762 4.83852 4.94022 5.00293 5.08425 5.12425 5.29223 5.35858 5.49662 5.53655 5.58228 5.72825 5.74221 5.84986 6.57320 6.99255 7.24395 7.86563 8.41772 9.20798 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.018510 B = 0.006208 C = 0.005157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.372918 B = 4508.993866 C = 5428.283475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.006 3.994 3 Si 0.914 3.086 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.236 4.236 8 H 0.044 0.956 9 N -0.553 5.553 10 C 0.175 3.825 11 C -0.100 4.100 12 C -0.047 4.047 13 C -0.143 4.143 14 C 0.541 3.459 15 O -0.548 6.548 16 O -0.498 6.498 17 C -0.049 4.049 18 C -0.131 4.131 19 C -0.001 4.001 20 Cl -0.055 7.055 21 C 0.103 3.897 22 C -0.183 4.183 23 C -0.205 4.205 24 H 0.251 0.749 25 H 0.104 0.896 26 H 0.033 0.967 27 H 0.130 0.870 28 H 0.434 0.566 29 H 0.174 0.826 30 H 0.159 0.841 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.284 -9.668 -10.688 14.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.192 4.192 3 Si 0.742 3.258 4 H -0.199 1.199 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.367 4.367 8 H 0.061 0.939 9 N -0.269 5.269 10 C 0.050 3.950 11 C -0.103 4.103 12 C -0.066 4.066 13 C -0.144 4.144 14 C 0.386 3.614 15 O -0.440 6.440 16 O -0.312 6.312 17 C -0.067 4.067 18 C -0.150 4.150 19 C -0.029 4.029 20 Cl -0.026 7.026 21 C -0.005 4.005 22 C -0.221 4.221 23 C -0.246 4.246 24 H 0.061 0.939 25 H 0.121 0.879 26 H 0.051 0.949 27 H 0.148 0.852 28 H 0.296 0.704 29 H 0.191 0.809 30 H 0.177 0.823 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.063 -9.101 -10.299 14.081 hybrid contribution 0.312 0.680 0.254 0.790 sum 3.375 -8.421 -10.045 13.536 Atomic orbital electron populations 1.69858 1.06109 1.25882 1.53371 1.25485 0.95270 0.99366 0.99117 0.86154 0.78769 0.82120 0.78713 1.19940 1.21842 1.20508 1.18672 0.89380 0.83778 1.44842 0.93853 1.43279 1.39168 1.08126 1.36331 1.20040 0.89243 1.01448 0.84288 1.20913 0.98586 0.93244 0.97565 1.21032 0.96693 0.93363 0.95514 1.19154 1.06838 0.90514 0.97911 1.20684 0.73899 0.88200 0.78573 1.90880 1.41655 1.63362 1.48120 1.84503 1.73901 1.33586 1.39223 1.21527 0.94464 0.91824 0.98877 1.21306 1.01488 0.96115 0.96065 1.21478 0.98842 0.86777 0.95781 1.98420 1.95221 1.13528 1.95411 1.21352 0.90215 0.92614 0.96353 1.23010 1.04924 1.00806 0.93366 1.23275 1.03107 0.98281 0.99922 0.93876 0.87890 0.94910 0.85204 0.70388 0.80860 0.82344 0.88790 0.90435 0.88032 0.88437 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.35 11.06 21.65 0.24 -49.11 16 2 C 0.01 0.30 3.68 84.86 0.31 0.62 16 3 Si 0.91 42.73 29.24 68.60 2.01 44.73 16 4 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 6 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 7 C -0.24 -12.02 6.72 84.03 0.56 -11.46 16 8 H 0.04 2.31 7.15 -2.91 -0.02 2.29 16 9 N -0.55 -26.04 2.74 -682.36 -1.87 -27.91 16 10 C 0.18 7.91 4.90 85.63 0.42 8.33 16 11 C -0.10 -3.84 5.45 -19.88 -0.11 -3.95 16 12 C -0.05 -1.59 9.21 22.53 0.21 -1.39 16 13 C -0.14 -4.07 5.87 -20.10 -0.12 -4.19 16 14 C 0.54 13.90 8.27 70.31 0.58 14.48 16 15 O -0.55 -17.49 17.13 19.88 0.34 -17.15 16 16 O -0.50 -8.19 12.68 -56.32 -0.71 -8.91 16 17 C -0.05 -1.17 9.62 22.53 0.22 -0.96 16 18 C -0.13 -3.65 9.81 22.25 0.22 -3.43 16 19 C 0.00 -0.04 6.32 22.41 0.14 0.10 16 20 Cl -0.06 -2.25 23.97 -2.72 -0.07 -2.31 16 21 C 0.10 4.26 6.58 44.99 0.30 4.56 16 22 C -0.18 -7.00 9.79 30.60 0.30 -6.70 16 23 C -0.21 -7.58 10.35 30.59 0.32 -7.26 16 24 H 0.25 13.49 8.32 -92.71 -0.77 12.72 16 25 H 0.10 5.21 4.60 -2.39 -0.01 5.20 16 26 H 0.03 1.45 7.98 -2.39 -0.02 1.43 16 27 H 0.13 4.51 7.63 -2.91 -0.02 4.49 16 28 H 0.43 2.95 9.11 -74.05 -0.67 2.28 16 29 H 0.17 2.92 7.61 -2.91 -0.02 2.90 16 30 H 0.16 3.53 8.06 -2.90 -0.02 3.51 16 31 H 0.09 3.68 8.14 -2.39 -0.02 3.66 16 32 H 0.08 3.32 6.70 -2.39 -0.02 3.31 16 33 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 34 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 35 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -61.98 314.44 3.75 -58.22 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.46 Total: 13.67 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: 3.35 Total: -11.25 kcal Atomic # 7 Polarization: -75.39 SS G_CDS: -1.63 Total: -77.01 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.37 Total: -26.06 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.01 Total: 44.73 kcal Atomic # 17 Polarization: -2.25 SS G_CDS: -0.07 Total: -2.31 kcal Total: -61.98 3.75 -58.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610623225.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.794 kcal (2) G-P(sol) polarization free energy of solvation -61.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds