Wall clock time and date at job start Tue Mar 31 2020 07:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30276 * 126.28369 * 2 1 4 4 N 1.28666 * 109.38446 * 179.72566 * 3 2 1 5 5 C 1.30272 * 109.37681 * 0.44640 * 4 3 2 6 6 C 1.50703 * 126.28143 * 179.82788 * 5 4 3 7 7 H 1.09001 * 109.47251 * 164.68899 * 6 5 4 8 8 C 1.53003 * 109.46824 * 284.68536 * 6 5 4 9 9 S 1.81001 * 109.47396 * 44.68600 * 6 5 4 10 10 C 1.76196 * 100.00091 * 175.00490 * 9 6 5 11 11 N 1.32387 * 126.26075 * 0.02562 * 10 9 6 12 12 N 1.28514 * 110.20378 * 179.97438 * 11 10 9 13 13 C 1.33095 * 109.74899 * 0.02562 * 12 11 10 14 14 C 1.39771 * 126.56547 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00111 * 188.22178 * 14 13 12 16 16 C 1.40084 * 120.00218 * 8.21795 * 14 13 12 17 17 N 1.30817 * 119.99946 * 191.23483 * 16 14 13 18 18 Si 1.86798 * 119.99751 * 11.23165 * 16 14 13 19 19 H 1.48506 * 109.46877 * 270.00124 * 18 16 14 20 20 H 1.48499 * 109.47207 * 29.99996 * 18 16 14 21 21 H 1.48496 * 109.47289 * 150.00071 * 18 16 14 22 22 N 1.36673 * 126.26020 * 180.29951 * 10 9 6 23 23 C 1.46501 * 127.15030 * 0.02603 * 22 10 9 24 24 O 1.34362 * 126.28422 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.47265 * 269.99723 * 1 2 3 26 26 H 1.09003 * 109.47105 * 30.00606 * 1 2 3 27 27 H 1.09000 * 109.46724 * 149.99960 * 1 2 3 28 28 H 1.09005 * 109.47135 * 179.97438 * 8 6 5 29 29 H 1.08996 * 109.47475 * 299.99968 * 8 6 5 30 30 H 1.09001 * 109.46911 * 60.00155 * 8 6 5 31 31 H 0.96998 * 119.99838 * 354.77302 * 17 16 14 32 32 H 1.09002 * 109.47190 * 270.18231 * 23 22 10 33 33 H 1.09008 * 109.47074 * 30.18353 * 23 22 10 34 34 H 1.08997 * 109.46970 * 150.18023 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5090 0.6761 0.0058 5 6 3.5654 -0.6253 0.0001 6 6 4.8177 -1.4638 0.0003 7 1 4.5673 -2.4907 0.2663 8 6 5.4492 -1.4373 -1.3931 9 16 5.9903 -0.7967 1.2070 10 6 7.2566 -2.0180 1.1105 11 7 7.2527 -3.0904 0.3343 12 7 8.3292 -3.7698 0.5105 13 6 9.0959 -3.1702 1.4183 14 6 10.3428 -3.6070 1.8745 15 1 10.8160 -3.1120 2.7097 16 6 10.9788 -4.6867 1.2485 17 7 12.0295 -5.2366 1.8008 18 14 10.3266 -5.3414 -0.3749 19 1 9.3239 -6.4050 -0.1127 20 1 9.6886 -4.2359 -1.1340 21 1 11.4486 -5.9036 -1.1686 22 7 8.4203 -2.0342 1.8271 23 6 8.8619 -1.0514 2.8197 24 8 2.3021 -1.0831 0.0005 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 6.3552 -2.0433 -1.3929 29 1 4.7431 -1.8390 -2.1198 30 1 5.6995 -0.4103 -1.6590 31 1 12.4136 -4.8503 2.6033 32 1 9.4325 -0.2658 2.3243 33 1 7.9920 -0.6144 3.3102 34 1 9.4895 -1.5427 3.5632 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001651963607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:48 Heat of formation + Delta-G solvation = 99.383534 kcal Electronic energy + Delta-G solvation = -20779.163007 eV Core-core repulsion = 17455.532773 eV Total energy + Delta-G solvation = -3323.630235 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.084 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.39896 -41.02063 -36.32571 -34.91210 -33.97071 -33.61791 -32.20997 -30.06843 -28.18227 -26.79375 -25.39195 -24.87779 -22.81688 -22.16974 -21.48792 -20.30283 -18.26866 -17.72778 -17.43541 -16.85031 -15.63249 -15.24890 -15.09303 -14.86584 -14.32942 -13.82612 -13.75523 -13.40234 -13.20668 -13.18855 -12.80843 -12.69994 -12.51686 -12.17526 -12.03479 -11.91824 -11.73251 -11.16034 -11.08905 -10.92019 -10.37393 -9.98638 -9.68671 -9.61171 -9.44763 -9.12719 -8.73906 -8.47773 -7.49865 -7.20418 -4.89629 0.80328 1.39401 2.13125 2.29739 2.40441 2.81508 3.47777 3.52297 3.55061 3.82366 3.96770 4.02380 4.17528 4.32099 4.60124 4.88741 4.90956 4.94052 5.03956 5.06779 5.24417 5.33017 5.38727 5.52197 5.69136 5.72155 5.87785 5.91990 6.25279 6.36585 6.62272 7.05375 7.34196 7.45130 7.98754 8.13285 8.28575 8.49454 9.89452 10.02338 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.034129 B = 0.003786 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.226939 B = 7394.042892 C = 7932.924798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.157 3.843 3 N -0.287 5.287 4 N -0.267 5.267 5 C 0.186 3.814 6 C 0.020 3.980 7 H 0.128 0.872 8 C -0.145 4.145 9 S 0.020 5.980 10 C 0.054 3.946 11 N -0.269 5.269 12 N -0.409 5.409 13 C 0.346 3.654 14 C -0.492 4.492 15 H 0.084 0.916 16 C 0.066 3.934 17 N -0.805 5.805 18 Si 1.105 2.895 19 H -0.277 1.277 20 H -0.254 1.254 21 H -0.310 1.310 22 N -0.509 5.509 23 C 0.100 3.900 24 O -0.219 6.219 25 H 0.099 0.901 26 H 0.106 0.894 27 H 0.093 0.907 28 H 0.105 0.895 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.284 0.716 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.495 8.539 -1.512 18.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.054 4.054 3 N -0.135 5.135 4 N -0.114 5.114 5 C -0.026 4.026 6 C -0.111 4.111 7 H 0.146 0.854 8 C -0.204 4.204 9 S 0.247 5.753 10 C -0.320 4.320 11 N -0.113 5.113 12 N -0.259 5.259 13 C 0.104 3.896 14 C -0.533 4.533 15 H 0.102 0.898 16 C -0.158 4.158 17 N -0.429 5.429 18 Si 0.932 3.068 19 H -0.203 1.203 20 H -0.180 1.180 21 H -0.240 1.240 22 N -0.210 5.210 23 C -0.044 4.044 24 O -0.098 6.098 25 H 0.117 0.883 26 H 0.125 0.875 27 H 0.112 0.888 28 H 0.124 0.876 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.420 8.579 -2.883 18.749 hybrid contribution 0.117 -0.124 1.870 1.878 sum -16.303 8.455 -1.013 18.393 Atomic orbital electron populations 1.20352 0.80092 1.05696 1.05280 1.28044 0.97850 0.79698 0.99811 1.74419 0.96053 1.25597 1.17459 1.74464 1.11893 1.08611 1.16467 1.27088 0.84490 0.91218 0.99784 1.21396 0.87636 1.00347 1.01747 0.85382 1.22185 1.02783 1.04432 0.90997 1.85048 1.12059 1.27005 1.51205 1.25368 0.95702 1.05236 1.05671 1.74180 1.16708 1.01673 1.18754 1.74222 1.02117 1.26183 1.23331 1.21651 0.94397 0.82285 0.91311 1.19388 0.99950 1.17114 1.16816 0.89839 1.27331 0.93073 0.91534 1.03825 1.70654 1.18795 1.34638 1.18768 0.82911 0.73088 0.77947 0.72856 1.20263 1.17951 1.23981 1.45812 1.16591 1.22475 1.36147 1.21570 1.00320 0.91349 0.91180 1.84786 1.17164 1.38278 1.69573 0.88263 0.87520 0.88844 0.87616 0.91739 0.90972 0.90424 0.91888 0.91218 0.90170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.30 10.51 36.01 0.38 0.08 16 2 C 0.16 1.79 8.48 -12.94 -0.11 1.68 16 3 N -0.29 -4.16 12.22 32.55 0.40 -3.76 16 4 N -0.27 -4.29 12.02 32.55 0.39 -3.90 16 5 C 0.19 2.77 7.10 -12.94 -0.09 2.68 16 6 C 0.02 0.30 2.83 -27.88 -0.08 0.22 16 7 H 0.13 1.97 8.14 -51.92 -0.42 1.54 16 8 C -0.14 -2.16 8.99 37.16 0.33 -1.83 16 9 S 0.02 0.35 21.07 -107.50 -2.27 -1.92 16 10 C 0.05 1.16 7.77 -87.28 -0.68 0.48 16 11 N -0.27 -6.45 9.74 30.89 0.30 -6.15 16 12 N -0.41 -10.84 7.50 31.26 0.23 -10.60 16 13 C 0.35 8.91 7.21 -154.82 -1.12 7.80 16 14 C -0.49 -12.83 9.47 -38.32 -0.36 -13.19 16 15 H 0.08 2.12 7.46 -52.48 -0.39 1.73 16 16 C 0.07 1.73 5.52 -17.29 -0.10 1.63 16 17 N -0.80 -21.20 13.65 55.56 0.76 -20.44 16 18 Si 1.10 26.83 26.40 -169.99 -4.49 22.34 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.25 -6.37 6.25 56.52 0.35 -6.02 16 21 H -0.31 -7.25 7.11 56.52 0.40 -6.85 16 22 N -0.51 -11.41 3.26 -123.18 -0.40 -11.81 16 23 C 0.10 1.73 10.89 59.85 0.65 2.38 16 24 O -0.22 -2.90 10.87 5.39 0.06 -2.84 16 25 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.11 1.87 5.89 -51.93 -0.31 1.56 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.28 7.12 8.73 -40.82 -0.36 6.76 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.05 7.85 -51.92 -0.41 0.64 16 34 H 0.08 1.34 7.47 -51.93 -0.39 0.95 16 LS Contribution 310.37 15.07 4.68 4.68 Total: -1.00 -31.89 310.37 -5.16 -37.05 By element: Atomic # 1 Polarization: -0.93 SS G_CDS: -3.65 Total: -4.58 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -1.17 Total: 1.94 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: 1.68 Total: -56.66 kcal Atomic # 8 Polarization: -2.90 SS G_CDS: 0.06 Total: -2.84 kcal Atomic # 14 Polarization: 26.83 SS G_CDS: -4.49 Total: 22.34 kcal Atomic # 16 Polarization: 0.35 SS G_CDS: -2.27 Total: -1.92 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.89 -5.16 -37.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651963607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.433 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds