Wall clock time and date at job start Tue Mar 31 2020 06:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86804 * 119.99849 * 2 1 4 4 H 1.48496 * 109.46866 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46860 * 299.99681 * 3 2 1 6 6 H 1.48496 * 109.47103 * 59.99623 * 3 2 1 7 7 C 1.39944 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00252 * 168.40667 * 7 2 1 9 9 C 1.41396 * 120.00279 * 348.40253 * 7 2 1 10 10 C 1.40742 * 120.24256 * 329.77933 * 9 7 2 11 11 C 1.37592 * 119.74721 * 179.97438 * 10 9 7 12 12 C 1.38659 * 120.24593 * 0.02562 * 11 10 9 13 13 C 1.38608 * 120.50257 * 359.97438 * 12 11 10 14 14 C 1.37639 * 120.25189 * 359.97438 * 13 12 11 15 15 S 1.76202 * 120.13141 * 179.97438 * 14 13 12 16 16 O 1.42104 * 106.40260 * 226.34225 * 15 14 13 17 17 O 1.42094 * 106.39959 * 359.26101 * 15 14 13 18 18 N 1.65601 * 107.21693 * 112.80526 * 15 14 13 19 19 C 1.46924 * 120.62695 * 276.06050 * 18 15 14 20 20 C 1.53622 * 108.54504 * 126.36903 * 19 18 15 21 21 C 1.53045 * 109.23852 * 54.85390 * 20 19 18 22 22 C 1.53033 * 109.53854 * 298.51104 * 21 20 19 23 23 C 1.46924 * 120.63205 * 96.34024 * 18 15 14 24 24 H 0.96996 * 120.00192 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.12546 * 0.02562 * 10 9 7 26 26 H 1.07995 * 119.87547 * 180.29217 * 11 10 9 27 27 H 1.08001 * 119.74571 * 180.02562 * 12 11 10 28 28 H 1.08005 * 119.87784 * 180.02562 * 13 12 11 29 29 H 1.09002 * 109.58273 * 246.20251 * 19 18 15 30 30 H 1.09001 * 109.59157 * 6.62339 * 19 18 15 31 31 H 1.08999 * 109.63544 * 294.86297 * 20 19 18 32 32 H 1.09000 * 109.46103 * 174.73329 * 20 19 18 33 33 H 1.09000 * 109.45571 * 178.49322 * 21 20 19 34 34 H 1.08999 * 109.44972 * 58.52601 * 21 20 19 35 35 H 1.09010 * 109.49971 * 301.41692 * 22 21 20 36 36 H 1.09005 * 109.50062 * 181.32161 * 22 21 20 37 37 H 1.09005 * 109.58471 * 353.36625 * 23 18 15 38 38 H 1.08998 * 109.58783 * 113.79408 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8835 2.3964 -1.2126 6 1 1.8834 2.3965 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0715 -1.2216 -0.1874 9 6 1.3227 -2.4239 0.2472 10 6 0.1851 -2.4390 1.0758 11 6 -0.4743 -3.6240 1.3085 12 6 -0.0215 -4.8004 0.7307 13 6 1.0977 -4.7973 -0.0869 14 6 1.7723 -3.6234 -0.3345 15 16 3.1952 -3.6233 -1.3739 16 8 4.1852 -2.8593 -0.6988 17 8 3.3957 -4.9702 -1.7796 18 7 2.8030 -2.7761 -2.7417 19 6 2.1060 -3.4338 -3.8554 20 6 0.8467 -2.6209 -4.1919 21 6 1.2429 -1.1687 -4.4686 22 6 1.8847 -0.5659 -3.2169 23 6 3.1508 -1.3542 -2.8670 24 1 -0.4850 0.8400 -0.0004 25 1 -0.1695 -1.5238 1.5265 26 1 -1.3502 -3.6372 1.9401 27 1 -0.5455 -5.7259 0.9185 28 1 1.4413 -5.7194 -0.5321 29 1 2.7622 -3.4730 -4.7249 30 1 1.8226 -4.4450 -3.5631 31 1 0.1533 -2.6550 -3.3516 32 1 0.3680 -3.0421 -5.0760 33 1 0.3552 -0.5945 -4.7340 34 1 1.9554 -1.1377 -5.2929 35 1 1.1815 -0.6194 -2.3857 36 1 2.1453 0.4753 -3.4071 37 1 3.5569 -0.9927 -1.9223 38 1 3.8904 -1.2272 -3.6575 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619571663.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:05 Heat of formation + Delta-G solvation = -66.494422 kcal Electronic energy + Delta-G solvation = -23498.888224 eV Core-core repulsion = 20239.312574 eV Total energy + Delta-G solvation = -3259.575650 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -37.93134 -37.50632 -36.35596 -34.87488 -33.92471 -31.85016 -30.53486 -30.20716 -29.55612 -25.54317 -23.91974 -22.77198 -21.68761 -21.13680 -19.77971 -18.06207 -17.68705 -17.11419 -15.94496 -15.48804 -15.16155 -14.44619 -14.10943 -13.98462 -13.82141 -13.41439 -13.27069 -13.01343 -12.91502 -12.75127 -12.03984 -11.99275 -11.43548 -11.32933 -11.25062 -11.20355 -11.15370 -11.04412 -10.72989 -10.62002 -10.55657 -10.37752 -10.12342 -9.92257 -9.77844 -9.38425 -9.19055 -8.31533 -8.00194 -7.59076 -7.06657 -4.78066 1.52226 2.33419 2.69361 2.94935 3.02999 3.05947 3.74521 3.88473 4.37073 4.76745 5.13545 5.21506 5.33578 5.36853 5.50556 5.69027 5.76897 5.85211 5.99358 6.03261 6.14549 6.15033 6.22468 6.26782 6.35625 6.42832 6.52586 6.63746 6.74965 6.85158 6.96206 7.05651 7.07206 7.31126 7.34890 7.51710 7.69191 7.80030 7.94801 8.35761 8.51101 8.64914 9.86681 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.012456 B = 0.010832 C = 0.007926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.337653 B = 2584.223167 C = 3531.952555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.086 3.914 3 Si 0.894 3.106 4 H -0.249 1.249 5 H -0.266 1.266 6 H -0.269 1.269 7 C -0.475 4.475 8 H 0.117 0.883 9 C 0.194 3.806 10 C -0.156 4.156 11 C -0.078 4.078 12 C -0.248 4.248 13 C -0.004 4.004 14 C -0.773 4.773 15 S 2.703 3.297 16 O -0.974 6.974 17 O -0.997 6.997 18 N -0.992 5.992 19 C 0.130 3.870 20 C -0.134 4.134 21 C -0.110 4.110 22 C -0.145 4.145 23 C 0.127 3.873 24 H 0.286 0.714 25 H 0.122 0.878 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.107 0.893 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.099 0.901 36 H 0.058 0.942 37 H 0.100 0.900 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.020 1.114 -6.363 6.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.135 4.135 3 Si 0.717 3.283 4 H -0.171 1.171 5 H -0.191 1.191 6 H -0.194 1.194 7 C -0.503 4.503 8 H 0.134 0.866 9 C 0.189 3.811 10 C -0.176 4.176 11 C -0.097 4.097 12 C -0.268 4.268 13 C -0.024 4.024 14 C -0.868 4.868 15 S 2.802 3.198 16 O -0.964 6.964 17 O -0.988 6.988 18 N -0.828 5.828 19 C 0.004 3.996 20 C -0.173 4.173 21 C -0.147 4.147 22 C -0.184 4.184 23 C 0.002 3.998 24 H 0.097 0.903 25 H 0.140 0.860 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.125 0.875 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.118 0.882 36 H 0.077 0.923 37 H 0.118 0.882 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.640 0.892 -6.252 6.348 hybrid contribution -0.774 0.960 0.260 1.260 sum -0.134 1.852 -5.993 6.274 Atomic orbital electron populations 1.69806 1.07611 1.29880 1.32890 1.25917 0.94704 1.01414 0.91454 0.86440 0.82063 0.80578 0.79203 1.17149 1.19102 1.19381 1.20551 0.98255 0.90353 1.41149 0.86552 1.17000 0.89431 0.89749 0.84872 1.21489 0.98655 0.96644 1.00824 1.20901 0.97561 0.93572 0.97617 1.20492 1.01282 0.97047 1.08004 1.20243 0.92950 0.95157 0.94063 1.29913 1.28497 1.01070 1.27356 1.01032 0.74711 0.71658 0.72400 1.93459 1.58299 1.71367 1.73300 1.93433 1.86469 1.35988 1.82885 1.57617 1.73584 1.20147 1.31431 1.21305 0.93060 0.95765 0.89464 1.21960 0.97875 0.95794 1.01628 1.21392 0.99797 0.95866 0.97688 1.22059 0.99094 0.97771 0.99490 1.21418 0.96132 0.79556 1.02667 0.90336 0.86011 0.88913 0.88789 0.87542 0.92051 0.90055 0.90766 0.91941 0.92649 0.92835 0.88237 0.92348 0.88184 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.52 10.99 55.55 0.61 -16.91 16 2 C 0.09 1.90 3.72 -17.34 -0.06 1.84 16 3 Si 0.89 17.03 29.58 -169.99 -5.03 12.00 16 4 H -0.25 -4.80 7.11 56.52 0.40 -4.39 16 5 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 6 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.47 -11.34 5.92 -37.74 -0.22 -11.56 16 8 H 0.12 2.84 3.89 -52.48 -0.20 2.63 16 9 C 0.19 4.81 5.53 -106.82 -0.59 4.22 16 10 C -0.16 -3.79 8.65 -38.87 -0.34 -4.13 16 11 C -0.08 -1.72 10.02 -39.66 -0.40 -2.12 16 12 C -0.25 -5.40 10.05 -39.29 -0.39 -5.79 16 13 C 0.00 -0.10 9.53 -39.66 -0.38 -0.47 16 14 C -0.77 -18.34 5.97 -38.87 -0.23 -18.58 16 15 S 2.70 59.89 5.10 -107.50 -0.55 59.34 16 16 O -0.97 -23.53 14.33 -57.17 -0.82 -24.35 16 17 O -1.00 -22.90 15.90 -57.17 -0.91 -23.81 16 18 N -0.99 -18.71 3.28 -113.27 -0.37 -19.09 16 19 C 0.13 2.09 6.38 -3.49 -0.02 2.07 16 20 C -0.13 -2.01 6.10 -26.39 -0.16 -2.17 16 21 C -0.11 -1.59 5.88 -26.69 -0.16 -1.75 16 22 C -0.15 -2.46 5.95 -26.62 -0.16 -2.62 16 23 C 0.13 2.26 5.51 -3.71 -0.02 2.24 16 24 H 0.29 5.85 8.30 -40.82 -0.34 5.51 16 25 H 0.12 2.97 6.37 -52.49 -0.33 2.64 16 26 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 27 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 28 H 0.11 2.24 7.32 -52.48 -0.38 1.86 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 1.32 7.30 -51.93 -0.38 0.94 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 1.98 5.65 -51.92 -0.29 1.68 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.10 1.95 4.88 -51.93 -0.25 1.69 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 306.52 15.07 4.62 4.62 Total: -1.00 -27.35 306.52 -10.37 -37.72 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -4.79 Total: 9.29 kcal Atomic # 6 Polarization: -35.69 SS G_CDS: -3.14 Total: -38.83 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.24 Total: -36.00 kcal Atomic # 8 Polarization: -46.42 SS G_CDS: -1.73 Total: -48.15 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.03 Total: 12.00 kcal Atomic # 16 Polarization: 59.89 SS G_CDS: -0.55 Total: 59.34 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.35 -10.37 -37.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619571663.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.770 kcal (2) G-P(sol) polarization free energy of solvation -27.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds