Wall clock time and date at job start Tue Mar 31 2020 06:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86804 * 119.99849 * 2 1 4 4 H 1.48496 * 109.46866 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46860 * 299.99681 * 3 2 1 6 6 H 1.48496 * 109.47103 * 59.99623 * 3 2 1 7 7 C 1.39944 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00252 * 168.40667 * 7 2 1 9 9 C 1.41396 * 120.00279 * 348.40253 * 7 2 1 10 10 C 1.40742 * 120.24256 * 329.77933 * 9 7 2 11 11 C 1.37592 * 119.74721 * 179.97438 * 10 9 7 12 12 C 1.38659 * 120.24593 * 0.02562 * 11 10 9 13 13 C 1.38608 * 120.50257 * 359.97438 * 12 11 10 14 14 C 1.37639 * 120.25189 * 359.97438 * 13 12 11 15 15 S 1.76202 * 120.13141 * 179.97438 * 14 13 12 16 16 O 1.42104 * 106.40260 * 226.34225 * 15 14 13 17 17 O 1.42094 * 106.39959 * 359.26101 * 15 14 13 18 18 N 1.65601 * 107.21693 * 112.80526 * 15 14 13 19 19 C 1.46924 * 120.62695 * 276.06050 * 18 15 14 20 20 C 1.53622 * 108.54504 * 126.36903 * 19 18 15 21 21 C 1.53045 * 109.23852 * 54.85390 * 20 19 18 22 22 C 1.53033 * 109.53854 * 298.51104 * 21 20 19 23 23 C 1.46924 * 120.63205 * 96.34024 * 18 15 14 24 24 H 0.96996 * 120.00192 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.12546 * 0.02562 * 10 9 7 26 26 H 1.07995 * 119.87547 * 180.29217 * 11 10 9 27 27 H 1.08001 * 119.74571 * 180.02562 * 12 11 10 28 28 H 1.08005 * 119.87784 * 180.02562 * 13 12 11 29 29 H 1.09002 * 109.58273 * 246.20251 * 19 18 15 30 30 H 1.09001 * 109.59157 * 6.62339 * 19 18 15 31 31 H 1.08999 * 109.63544 * 294.86297 * 20 19 18 32 32 H 1.09000 * 109.46103 * 174.73329 * 20 19 18 33 33 H 1.09000 * 109.45571 * 178.49322 * 21 20 19 34 34 H 1.08999 * 109.44972 * 58.52601 * 21 20 19 35 35 H 1.09010 * 109.49971 * 301.41692 * 22 21 20 36 36 H 1.09005 * 109.50062 * 181.32161 * 22 21 20 37 37 H 1.09005 * 109.58471 * 353.36625 * 23 18 15 38 38 H 1.08998 * 109.58783 * 113.79408 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8835 2.3964 -1.2126 6 1 1.8834 2.3965 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0715 -1.2216 -0.1874 9 6 1.3227 -2.4239 0.2472 10 6 0.1851 -2.4390 1.0758 11 6 -0.4743 -3.6240 1.3085 12 6 -0.0215 -4.8004 0.7307 13 6 1.0977 -4.7973 -0.0869 14 6 1.7723 -3.6234 -0.3345 15 16 3.1952 -3.6233 -1.3739 16 8 4.1852 -2.8593 -0.6988 17 8 3.3957 -4.9702 -1.7796 18 7 2.8030 -2.7761 -2.7417 19 6 2.1060 -3.4338 -3.8554 20 6 0.8467 -2.6209 -4.1919 21 6 1.2429 -1.1687 -4.4686 22 6 1.8847 -0.5659 -3.2169 23 6 3.1508 -1.3542 -2.8670 24 1 -0.4850 0.8400 -0.0004 25 1 -0.1695 -1.5238 1.5265 26 1 -1.3502 -3.6372 1.9401 27 1 -0.5455 -5.7259 0.9185 28 1 1.4413 -5.7194 -0.5321 29 1 2.7622 -3.4730 -4.7249 30 1 1.8226 -4.4450 -3.5631 31 1 0.1533 -2.6550 -3.3516 32 1 0.3680 -3.0421 -5.0760 33 1 0.3552 -0.5945 -4.7340 34 1 1.9554 -1.1377 -5.2929 35 1 1.1815 -0.6194 -2.3857 36 1 2.1453 0.4753 -3.4071 37 1 3.5569 -0.9927 -1.9223 38 1 3.8904 -1.2272 -3.6575 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619571663.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:04 Heat of formation + Delta-G solvation = -82.301396 kcal Electronic energy + Delta-G solvation = -23499.573666 eV Core-core repulsion = 20239.312574 eV Total energy + Delta-G solvation = -3260.261092 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.46410 -39.05435 -38.14508 -36.68516 -35.64917 -33.18720 -32.00649 -31.79966 -31.32527 -27.29889 -25.25387 -24.07831 -23.43438 -22.89439 -21.12423 -19.67827 -19.41910 -18.73758 -17.66731 -17.17055 -16.78181 -16.07084 -15.53455 -15.40335 -15.17056 -15.03698 -14.94647 -14.45961 -14.41054 -14.29393 -13.76883 -13.48510 -13.08306 -12.98617 -12.91232 -12.89066 -12.76482 -12.67384 -12.35794 -12.15787 -11.97524 -11.73306 -11.59633 -11.39601 -11.20016 -10.97784 -10.94036 -9.86366 -9.65376 -9.38356 -8.75802 -6.56541 -0.16439 0.56151 0.98524 1.38371 1.46449 1.51320 2.17094 2.29433 2.65026 3.02717 3.51948 3.69060 3.88495 4.11959 4.17089 4.32061 4.39834 4.48839 4.50351 4.58613 4.71846 4.74584 4.90459 4.93246 5.01224 5.02411 5.13488 5.21674 5.31934 5.33769 5.39761 5.50196 5.57485 5.72040 5.75034 5.87010 5.95323 6.02067 6.18075 6.56196 6.75367 6.86637 8.20343 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.012456 B = 0.010832 C = 0.007926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.337653 B = 2584.223167 C = 3531.952555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.065 3.935 3 Si 0.941 3.059 4 H -0.256 1.256 5 H -0.245 1.245 6 H -0.266 1.266 7 C -0.488 4.488 8 H 0.107 0.893 9 C 0.169 3.831 10 C -0.183 4.183 11 C -0.078 4.078 12 C -0.252 4.252 13 C -0.018 4.018 14 C -0.793 4.793 15 S 2.715 3.285 16 O -1.000 7.000 17 O -1.009 7.009 18 N -0.989 5.989 19 C 0.121 3.879 20 C -0.129 4.129 21 C -0.105 4.105 22 C -0.146 4.146 23 C 0.121 3.879 24 H 0.294 0.706 25 H 0.112 0.888 26 H 0.120 0.880 27 H 0.124 0.876 28 H 0.119 0.881 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.040 0.960 32 H 0.094 0.906 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.244 1.658 -8.140 8.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.154 4.154 3 Si 0.761 3.239 4 H -0.179 1.179 5 H -0.169 1.169 6 H -0.191 1.191 7 C -0.516 4.516 8 H 0.124 0.876 9 C 0.165 3.835 10 C -0.203 4.203 11 C -0.097 4.097 12 C -0.272 4.272 13 C -0.037 4.037 14 C -0.887 4.887 15 S 2.813 3.187 16 O -0.991 6.991 17 O -1.000 7.000 18 N -0.827 5.827 19 C -0.004 4.004 20 C -0.168 4.168 21 C -0.143 4.143 22 C -0.185 4.185 23 C -0.003 4.003 24 H 0.105 0.895 25 H 0.130 0.870 26 H 0.138 0.862 27 H 0.142 0.858 28 H 0.136 0.864 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.112 0.888 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.392 1.422 -8.022 8.156 hybrid contribution -0.740 0.754 0.791 1.320 sum -0.348 2.176 -7.230 7.559 Atomic orbital electron populations 1.69818 1.08545 1.31066 1.32503 1.26411 0.95165 1.03273 0.90572 0.85756 0.80484 0.77582 0.80089 1.17933 1.16863 1.19053 1.20552 0.97826 0.91103 1.42132 0.87588 1.17289 0.90125 0.90575 0.85527 1.21537 0.99632 0.97186 1.01956 1.21222 0.97995 0.93061 0.97422 1.20857 1.01062 0.98126 1.07171 1.20545 0.93424 0.95379 0.94399 1.30221 1.29084 1.01249 1.28179 1.00522 0.74073 0.71400 0.72689 1.93415 1.59328 1.71851 1.74471 1.93403 1.86587 1.36856 1.83122 1.57409 1.73855 1.20653 1.30818 1.21625 0.94008 0.95402 0.89379 1.21930 0.96787 0.96509 1.01602 1.21389 1.00641 0.95104 0.97156 1.22028 0.98025 0.98858 0.99577 1.21570 0.97356 0.78756 1.02652 0.89460 0.87000 0.86217 0.85761 0.86354 0.88823 0.90707 0.94128 0.88788 0.91799 0.90128 0.91578 0.90741 0.90474 0.89702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.20 10.99 21.83 0.24 -35.96 16 2 C 0.07 2.93 3.72 85.26 0.32 3.24 16 3 Si 0.94 34.47 29.58 68.60 2.03 36.49 16 4 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 5 H -0.25 -8.10 7.11 99.48 0.71 -7.39 16 6 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 7 C -0.49 -23.93 5.92 23.46 0.14 -23.79 16 8 H 0.11 5.35 3.89 -2.91 -0.01 5.34 16 9 C 0.17 8.62 5.53 -21.29 -0.12 8.50 16 10 C -0.18 -9.08 8.65 22.73 0.20 -8.88 16 11 C -0.08 -3.46 10.02 22.22 0.22 -3.24 16 12 C -0.25 -10.78 10.05 22.46 0.23 -10.56 16 13 C -0.02 -0.81 9.53 22.22 0.21 -0.60 16 14 C -0.79 -38.41 5.97 22.73 0.14 -38.27 16 15 S 2.72 121.63 5.10 -56.49 -0.29 121.34 16 16 O -1.00 -49.49 14.33 -128.00 -1.83 -51.33 16 17 O -1.01 -46.35 15.90 -128.00 -2.03 -48.39 16 18 N -0.99 -36.55 3.28 -512.29 -1.68 -38.23 16 19 C 0.12 3.64 6.38 86.51 0.55 4.19 16 20 C -0.13 -3.62 6.10 30.82 0.19 -3.43 16 21 C -0.11 -2.75 5.88 30.62 0.18 -2.57 16 22 C -0.15 -4.70 5.95 30.67 0.18 -4.52 16 23 C 0.12 4.15 5.51 86.36 0.48 4.63 16 24 H 0.29 12.04 8.30 -92.71 -0.77 11.27 16 25 H 0.11 5.63 6.37 -2.91 -0.02 5.61 16 26 H 0.12 4.51 8.06 -2.91 -0.02 4.48 16 27 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 28 H 0.12 4.96 7.32 -2.91 -0.02 4.94 16 29 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.07 2.34 7.30 -2.39 -0.02 2.33 16 31 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.07 2.61 5.65 -2.38 -0.01 2.60 16 36 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 37 H 0.08 3.01 4.88 -2.38 -0.01 3.00 16 38 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -59.64 306.52 0.41 -59.23 By element: Atomic # 1 Polarization: 31.05 SS G_CDS: 1.08 Total: 32.13 kcal Atomic # 6 Polarization: -78.20 SS G_CDS: 2.91 Total: -75.29 kcal Atomic # 7 Polarization: -72.75 SS G_CDS: -1.44 Total: -74.19 kcal Atomic # 8 Polarization: -95.85 SS G_CDS: -3.87 Total: -99.72 kcal Atomic # 14 Polarization: 34.47 SS G_CDS: 2.03 Total: 36.49 kcal Atomic # 16 Polarization: 121.63 SS G_CDS: -0.29 Total: 121.34 kcal Total: -59.64 0.41 -59.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619571663.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.070 kcal (2) G-P(sol) polarization free energy of solvation -59.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds