Wall clock time and date at job start Tue Mar 31 2020 07:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09003 * 110.26330 * 2 1 4 4 C 1.53744 * 110.38331 * 237.88073 * 2 1 3 5 5 C 1.51217 * 104.53819 * 241.03169 * 4 2 1 6 6 C 1.38171 * 130.99188 * 180.02562 * 5 4 2 7 7 C 1.38231 * 120.15554 * 179.97438 * 6 5 4 8 8 C 1.38296 * 119.83269 * 0.02562 * 7 6 5 9 9 C 1.37828 * 120.23186 * 359.97438 * 8 7 6 10 10 C 1.38607 * 108.53892 * 359.76724 * 5 4 2 11 11 N 1.39574 * 111.64607 * 0.39503 * 10 5 4 12 12 S 1.65604 * 124.95488 * 179.86455 * 11 10 5 13 13 O 1.42102 * 104.27479 * 153.62411 * 12 11 10 14 14 O 1.42097 * 104.27323 * 25.76791 * 12 11 10 15 15 C 1.81391 * 104.45041 * 269.69462 * 12 11 10 16 16 C 1.53003 * 109.46896 * 179.97438 * 15 12 11 17 17 C 1.50703 * 109.47038 * 180.02562 * 16 15 12 18 18 H 1.08006 * 120.00159 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00120 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00089 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99938 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 269.99556 * 21 19 17 23 23 H 1.48503 * 109.47261 * 149.99737 * 21 19 17 24 24 H 1.48500 * 109.47454 * 29.99730 * 21 19 17 25 25 H 1.08995 * 109.46739 * 297.93082 * 1 2 3 26 26 H 1.08998 * 109.47076 * 57.93041 * 1 2 3 27 27 H 1.08995 * 109.46801 * 177.92730 * 1 2 3 28 28 H 1.09010 * 110.42367 * 359.79187 * 4 2 1 29 29 H 1.08997 * 110.42499 * 122.26602 * 4 2 1 30 30 H 1.08007 * 119.91854 * 359.97438 * 6 5 4 31 31 H 1.07999 * 120.08069 * 179.97438 * 7 6 5 32 32 H 1.08002 * 119.88490 * 180.02562 * 8 7 6 33 33 H 1.08000 * 119.86046 * 180.02562 * 9 8 7 34 34 H 1.08996 * 109.47327 * 60.00078 * 15 12 11 35 35 H 1.08996 * 109.47109 * 299.99973 * 15 12 11 36 36 H 1.09003 * 109.46825 * 60.00440 * 16 15 12 37 37 H 1.08996 * 109.47396 * 300.00013 * 16 15 12 38 38 H 0.96998 * 119.99255 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9076 1.0226 0.0000 4 6 2.0656 -0.7662 -1.2206 5 6 2.8623 -1.9088 -0.6319 6 6 3.5730 -2.9259 -1.2398 7 6 4.2307 -3.8685 -0.4719 8 6 4.1756 -3.7919 0.9078 9 6 3.4680 -2.7792 1.5189 10 6 2.8056 -1.8195 0.7501 11 7 2.0385 -0.7297 1.1646 12 16 1.7507 -0.3173 2.7425 13 8 1.5124 1.0830 2.7008 14 8 2.8602 -0.8509 3.4520 15 6 0.2310 -1.2090 3.1734 16 6 -0.1433 -0.9065 4.6258 17 6 -1.4056 -1.6478 4.9840 18 1 -1.8924 -2.2719 4.2492 19 6 -1.9396 -1.5284 6.2496 20 7 -1.3472 -0.7680 7.1443 21 14 -3.5037 -2.4479 6.6938 22 1 -4.6820 -1.5978 6.3863 23 1 -3.4925 -2.7727 8.1429 24 1 -3.5804 -3.7041 5.9056 25 1 -0.3632 0.4814 0.9079 26 1 -0.3633 0.5456 -0.8708 27 1 -0.3633 -1.0270 -0.0372 28 1 1.2405 -1.1482 -1.8220 29 1 2.7092 -0.1233 -1.8209 30 1 3.6147 -2.9845 -2.3175 31 1 4.7855 -4.6633 -0.9483 32 1 4.6895 -4.5278 1.5086 33 1 3.4293 -2.7249 2.5969 34 1 0.3927 -2.2805 3.0559 35 1 -0.5769 -0.8891 2.5154 36 1 -0.3050 0.1651 4.7436 37 1 0.6647 -1.2266 5.2835 38 1 -0.5347 -0.2909 6.9136 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020180207.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:14 Heat of formation + Delta-G solvation = -53.000574 kcal Electronic energy + Delta-G solvation = -22036.013926 eV Core-core repulsion = 18777.023413 eV Total energy + Delta-G solvation = -3258.990513 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.62794 -37.23907 -36.62379 -35.73818 -34.34393 -32.49279 -31.26308 -30.90916 -29.33506 -26.60498 -25.14918 -22.90742 -22.15821 -21.53553 -21.42311 -19.03291 -17.81667 -16.85989 -16.65677 -16.11548 -15.85530 -15.43380 -15.07615 -14.60326 -13.86831 -13.81870 -13.74339 -13.38395 -13.00907 -12.96349 -12.89955 -12.55881 -12.46234 -12.16027 -11.93169 -11.88226 -11.68681 -11.51283 -11.25986 -11.04607 -10.75582 -10.67451 -10.60658 -10.53483 -10.28986 -10.10145 -8.83989 -8.76555 -8.50172 -7.90682 -6.52146 -4.25504 0.39307 1.33022 1.40283 2.64068 3.36223 3.39768 3.55643 3.70191 4.03366 4.11408 4.15524 4.43462 4.54878 4.71242 4.87997 4.97808 5.07827 5.14711 5.20497 5.26661 5.33656 5.43411 5.46873 5.51927 5.55365 5.72617 5.78357 5.87916 6.01055 6.15626 6.23834 6.28748 6.41855 6.53753 6.60374 6.87729 6.97486 7.02156 7.89727 8.25322 8.67726 9.46898 10.87665 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.020185 B = 0.004578 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.838285 B = 6114.374285 C = 6416.672661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.142 3.858 3 H 0.095 0.905 4 C -0.076 4.076 5 C -0.140 4.140 6 C -0.079 4.079 7 C -0.151 4.151 8 C -0.086 4.086 9 C -0.154 4.154 10 C 0.171 3.829 11 N -0.939 5.939 12 S 2.584 3.416 13 O -0.951 6.951 14 O -0.950 6.950 15 C -0.577 4.577 16 C 0.016 3.984 17 C -0.600 4.600 18 H 0.056 0.944 19 C 0.017 3.983 20 N -0.905 5.905 21 Si 1.076 2.924 22 H -0.286 1.286 23 H -0.282 1.282 24 H -0.287 1.287 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.145 0.855 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.633 -3.307 -18.948 20.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.037 3.963 3 H 0.113 0.887 4 C -0.114 4.114 5 C -0.144 4.144 6 C -0.098 4.098 7 C -0.171 4.171 8 C -0.105 4.105 9 C -0.175 4.175 10 C 0.074 3.926 11 N -0.760 5.760 12 S 2.685 3.315 13 O -0.942 6.942 14 O -0.941 6.941 15 C -0.711 4.711 16 C -0.023 4.023 17 C -0.639 4.639 18 H 0.075 0.925 19 C -0.188 4.188 20 N -0.540 5.540 21 Si 0.903 3.097 22 H -0.212 1.212 23 H -0.207 1.207 24 H -0.213 1.213 25 H 0.087 0.913 26 H 0.101 0.899 27 H 0.089 0.911 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.162 0.838 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.043 0.957 37 H 0.044 0.956 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.063 -2.834 -17.104 18.721 hybrid contribution 0.611 -0.076 -1.413 1.541 sum 7.675 -2.909 -18.517 20.255 Atomic orbital electron populations 1.22452 0.93873 1.03539 1.04083 1.21449 0.94743 0.96424 0.83665 0.88661 1.21153 0.99117 0.94478 0.96689 1.20114 1.02782 0.98818 0.92731 1.20345 0.96467 0.93445 0.99525 1.20970 1.02215 1.00016 0.93852 1.20871 0.97696 0.97162 0.94731 1.21108 1.00253 0.94754 1.01388 1.18087 0.92849 0.87970 0.93733 1.56723 1.59327 1.35375 1.24551 1.06133 0.78201 0.75724 0.71438 1.93558 1.87170 1.28982 1.84464 1.93537 1.49743 1.80648 1.70131 1.30417 1.17062 1.13320 1.10294 1.19101 0.99359 0.98119 0.85748 1.21838 1.09619 1.31908 1.00565 0.92546 1.25985 1.03319 0.96871 0.92591 1.70759 1.19592 1.27243 1.36370 0.83442 0.74402 0.75556 0.76260 1.21208 1.20705 1.21327 0.91323 0.89864 0.91096 0.89119 0.89417 0.86037 0.85833 0.85384 0.83780 0.85732 0.85698 0.95708 0.95649 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.01 8.69 37.16 0.32 -1.68 16 2 C 0.14 1.74 3.51 -67.52 -0.24 1.50 16 3 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 4 C -0.08 -0.75 6.59 -27.24 -0.18 -0.93 16 5 C -0.14 -1.71 6.23 -104.26 -0.65 -2.36 16 6 C -0.08 -0.83 10.03 -39.61 -0.40 -1.23 16 7 C -0.15 -1.57 10.06 -39.56 -0.40 -1.97 16 8 C -0.09 -1.04 10.02 -39.71 -0.40 -1.43 16 9 C -0.15 -2.30 9.38 -39.20 -0.37 -2.67 16 10 C 0.17 2.56 6.59 -83.66 -0.55 2.01 16 11 N -0.94 -14.49 3.12 -51.67 -0.16 -14.65 16 12 S 2.58 48.81 5.06 -107.50 -0.54 48.27 16 13 O -0.95 -19.85 17.32 -57.54 -1.00 -20.84 16 14 O -0.95 -19.97 15.25 -57.54 -0.88 -20.84 16 15 C -0.58 -11.41 6.12 37.16 0.23 -11.18 16 16 C 0.02 0.40 4.29 -27.88 -0.12 0.28 16 17 C -0.60 -16.71 9.11 -34.44 -0.31 -17.03 16 18 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 19 C 0.02 0.49 5.46 -17.82 -0.10 0.40 16 20 N -0.90 -27.48 13.65 55.43 0.76 -26.72 16 21 Si 1.08 24.74 29.90 -169.99 -5.08 19.65 16 22 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 25 H 0.07 0.88 6.77 -51.93 -0.35 0.53 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.09 0.72 7.71 -51.92 -0.40 0.32 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 31 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 32 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.14 2.36 6.11 -52.49 -0.32 2.04 16 34 H 0.12 2.29 8.14 -51.93 -0.42 1.87 16 35 H 0.12 2.23 6.77 -51.93 -0.35 1.88 16 36 H 0.02 0.65 8.01 -51.93 -0.42 0.23 16 37 H 0.03 0.67 8.01 -51.93 -0.42 0.25 16 38 H 0.27 8.20 7.22 -40.82 -0.29 7.90 16 LS Contribution 324.92 15.07 4.90 4.90 Total: -1.00 -34.44 324.92 -10.30 -44.74 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -5.13 Total: 1.79 kcal Atomic # 6 Polarization: -33.13 SS G_CDS: -3.16 Total: -36.29 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: 0.60 Total: -41.37 kcal Atomic # 8 Polarization: -39.82 SS G_CDS: -1.87 Total: -41.69 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.08 Total: 19.65 kcal Atomic # 16 Polarization: 48.81 SS G_CDS: -0.54 Total: 48.27 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.44 -10.30 -44.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020180207.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.256 kcal (2) G-P(sol) polarization free energy of solvation -34.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds