Wall clock time and date at job start Tue Mar 31 2020 07:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09003 * 110.26330 * 2 1 4 4 C 1.53744 * 110.38331 * 237.88073 * 2 1 3 5 5 C 1.51217 * 104.53819 * 241.03169 * 4 2 1 6 6 C 1.38171 * 130.99188 * 180.02562 * 5 4 2 7 7 C 1.38231 * 120.15554 * 179.97438 * 6 5 4 8 8 C 1.38296 * 119.83269 * 0.02562 * 7 6 5 9 9 C 1.37828 * 120.23186 * 359.97438 * 8 7 6 10 10 C 1.38607 * 108.53892 * 359.76724 * 5 4 2 11 11 N 1.39574 * 111.64607 * 0.39503 * 10 5 4 12 12 S 1.65604 * 124.95488 * 179.86455 * 11 10 5 13 13 O 1.42102 * 104.27479 * 153.62411 * 12 11 10 14 14 O 1.42097 * 104.27323 * 25.76791 * 12 11 10 15 15 C 1.81391 * 104.45041 * 269.69462 * 12 11 10 16 16 C 1.53003 * 109.46896 * 179.97438 * 15 12 11 17 17 C 1.50703 * 109.47038 * 180.02562 * 16 15 12 18 18 H 1.08006 * 120.00159 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00120 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00089 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99938 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 269.99556 * 21 19 17 23 23 H 1.48503 * 109.47261 * 149.99737 * 21 19 17 24 24 H 1.48500 * 109.47454 * 29.99730 * 21 19 17 25 25 H 1.08995 * 109.46739 * 297.93082 * 1 2 3 26 26 H 1.08998 * 109.47076 * 57.93041 * 1 2 3 27 27 H 1.08995 * 109.46801 * 177.92730 * 1 2 3 28 28 H 1.09010 * 110.42367 * 359.79187 * 4 2 1 29 29 H 1.08997 * 110.42499 * 122.26602 * 4 2 1 30 30 H 1.08007 * 119.91854 * 359.97438 * 6 5 4 31 31 H 1.07999 * 120.08069 * 179.97438 * 7 6 5 32 32 H 1.08002 * 119.88490 * 180.02562 * 8 7 6 33 33 H 1.08000 * 119.86046 * 180.02562 * 9 8 7 34 34 H 1.08996 * 109.47327 * 60.00078 * 15 12 11 35 35 H 1.08996 * 109.47109 * 299.99973 * 15 12 11 36 36 H 1.09003 * 109.46825 * 60.00440 * 16 15 12 37 37 H 1.08996 * 109.47396 * 300.00013 * 16 15 12 38 38 H 0.96998 * 119.99255 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9076 1.0226 0.0000 4 6 2.0656 -0.7662 -1.2206 5 6 2.8623 -1.9088 -0.6319 6 6 3.5730 -2.9259 -1.2398 7 6 4.2307 -3.8685 -0.4719 8 6 4.1756 -3.7919 0.9078 9 6 3.4680 -2.7792 1.5189 10 6 2.8056 -1.8195 0.7501 11 7 2.0385 -0.7297 1.1646 12 16 1.7507 -0.3173 2.7425 13 8 1.5124 1.0830 2.7008 14 8 2.8602 -0.8509 3.4520 15 6 0.2310 -1.2090 3.1734 16 6 -0.1433 -0.9065 4.6258 17 6 -1.4056 -1.6478 4.9840 18 1 -1.8924 -2.2719 4.2492 19 6 -1.9396 -1.5284 6.2496 20 7 -1.3472 -0.7680 7.1443 21 14 -3.5037 -2.4479 6.6938 22 1 -4.6820 -1.5978 6.3863 23 1 -3.4925 -2.7727 8.1429 24 1 -3.5804 -3.7041 5.9056 25 1 -0.3632 0.4814 0.9079 26 1 -0.3633 0.5456 -0.8708 27 1 -0.3633 -1.0270 -0.0372 28 1 1.2405 -1.1482 -1.8220 29 1 2.7092 -0.1233 -1.8209 30 1 3.6147 -2.9845 -2.3175 31 1 4.7855 -4.6633 -0.9483 32 1 4.6895 -4.5278 1.5086 33 1 3.4293 -2.7249 2.5969 34 1 0.3927 -2.2805 3.0559 35 1 -0.5769 -0.8891 2.5154 36 1 -0.3050 0.1651 4.7436 37 1 0.6647 -1.2266 5.2835 38 1 -0.5347 -0.2909 6.9136 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020180207.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:14 Heat of formation + Delta-G solvation = -75.555979 kcal Electronic energy + Delta-G solvation = -22036.992002 eV Core-core repulsion = 18777.023413 eV Total energy + Delta-G solvation = -3259.968589 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.58329 -38.67663 -37.72846 -37.36294 -36.40952 -33.46419 -33.14375 -31.91852 -30.30403 -27.53718 -27.11132 -24.33839 -23.57513 -22.60723 -22.42876 -20.36586 -19.42271 -18.66228 -17.91866 -17.56828 -16.84536 -16.71871 -16.14252 -15.73462 -15.63828 -15.51082 -15.02147 -14.81775 -14.32571 -14.20774 -13.93765 -13.78212 -13.58853 -13.45049 -13.37869 -13.33952 -12.99328 -12.75326 -12.56613 -12.48602 -12.38381 -12.15515 -12.06365 -11.92882 -11.70921 -11.46464 -10.81597 -10.67521 -9.73861 -8.92946 -8.80073 -6.55583 -1.12797 0.42600 0.45049 1.30012 1.50683 1.60079 1.77836 2.44239 2.52805 2.76128 2.84905 3.04097 3.14342 3.58674 3.67424 3.77971 3.84242 4.01639 4.14255 4.26565 4.30823 4.37829 4.40069 4.54757 4.70162 4.71000 4.85523 4.87631 4.88370 4.98780 5.07001 5.18935 5.24932 5.35357 5.50553 5.60345 5.65652 5.72798 6.00916 6.11516 6.37726 7.27444 8.58696 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.020185 B = 0.004578 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.838285 B = 6114.374285 C = 6416.672661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.127 3.873 3 H 0.095 0.905 4 C -0.067 4.067 5 C -0.137 4.137 6 C -0.075 4.075 7 C -0.141 4.141 8 C -0.095 4.095 9 C -0.186 4.186 10 C 0.132 3.868 11 N -0.937 5.937 12 S 2.609 3.391 13 O -0.976 6.976 14 O -0.979 6.979 15 C -0.576 4.576 16 C 0.008 3.992 17 C -0.614 4.614 18 H 0.067 0.933 19 C -0.039 4.039 20 N -0.933 5.933 21 Si 1.125 2.875 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.264 1.264 25 H 0.043 0.957 26 H 0.117 0.883 27 H 0.075 0.925 28 H 0.119 0.881 29 H 0.113 0.887 30 H 0.160 0.840 31 H 0.159 0.841 32 H 0.144 0.856 33 H 0.115 0.885 34 H 0.136 0.864 35 H 0.144 0.856 36 H 0.006 0.994 37 H 0.004 0.996 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.213 -4.866 -22.759 24.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.023 3.977 3 H 0.113 0.887 4 C -0.105 4.105 5 C -0.142 4.142 6 C -0.093 4.093 7 C -0.160 4.160 8 C -0.113 4.113 9 C -0.208 4.208 10 C 0.036 3.964 11 N -0.761 5.761 12 S 2.709 3.291 13 O -0.967 6.967 14 O -0.970 6.970 15 C -0.708 4.708 16 C -0.031 4.031 17 C -0.652 4.652 18 H 0.085 0.915 19 C -0.236 4.236 20 N -0.569 5.569 21 Si 0.945 3.055 22 H -0.193 1.193 23 H -0.207 1.207 24 H -0.188 1.188 25 H 0.062 0.938 26 H 0.135 0.865 27 H 0.094 0.906 28 H 0.137 0.863 29 H 0.131 0.869 30 H 0.178 0.822 31 H 0.176 0.824 32 H 0.162 0.838 33 H 0.133 0.867 34 H 0.154 0.846 35 H 0.162 0.838 36 H 0.024 0.976 37 H 0.022 0.978 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.649 -4.392 -20.926 22.391 hybrid contribution 0.865 0.371 -0.358 1.007 sum 7.514 -4.021 -21.283 22.926 Atomic orbital electron populations 1.22528 0.93116 1.04142 1.04432 1.21859 0.95584 0.96644 0.83572 0.88708 1.21244 1.00032 0.93622 0.95563 1.20498 1.02621 0.99685 0.91379 1.20824 0.94853 0.92131 1.01478 1.21423 1.01193 1.00455 0.92915 1.21146 0.97321 0.96673 0.96187 1.21145 1.02489 0.96774 1.00365 1.18381 0.94354 0.88334 0.95337 1.56296 1.59791 1.36387 1.23658 1.05020 0.77116 0.74729 0.72193 1.93513 1.87305 1.30367 1.85468 1.93498 1.50478 1.80934 1.72046 1.30328 1.19020 1.14512 1.06978 1.18992 0.98267 0.96715 0.89142 1.22286 1.10254 1.31744 1.00964 0.91523 1.27678 1.06225 0.96847 0.92881 1.70899 1.19787 1.28987 1.37276 0.82851 0.70920 0.75478 0.76272 1.19317 1.20747 1.18808 0.93776 0.86495 0.90574 0.86326 0.86886 0.82195 0.82373 0.83829 0.86726 0.84582 0.83762 0.97560 0.97800 0.93610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.74 8.69 71.99 0.63 -3.11 16 2 C 0.13 2.90 3.51 45.24 0.16 3.06 16 3 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 4 C -0.07 -1.05 6.59 30.26 0.20 -0.85 16 5 C -0.14 -2.93 6.23 -19.63 -0.12 -3.06 16 6 C -0.07 -1.23 10.03 22.25 0.22 -1.00 16 7 C -0.14 -2.41 10.06 22.28 0.22 -2.18 16 8 C -0.09 -2.17 10.02 22.19 0.22 -1.94 16 9 C -0.19 -5.69 9.38 22.52 0.21 -5.48 16 10 C 0.13 3.88 6.59 38.34 0.25 4.13 16 11 N -0.94 -28.94 3.12 -317.38 -0.99 -29.93 16 12 S 2.61 103.39 5.06 -56.49 -0.29 103.10 16 13 O -0.98 -42.58 17.32 -127.65 -2.21 -44.79 16 14 O -0.98 -44.00 15.25 -127.65 -1.95 -45.94 16 15 C -0.58 -23.63 6.12 71.98 0.44 -23.19 16 16 C 0.01 0.42 4.29 29.85 0.13 0.54 16 17 C -0.61 -34.92 9.11 25.60 0.23 -34.68 16 18 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 19 C -0.04 -2.23 5.46 84.65 0.46 -1.77 16 20 N -0.93 -58.71 13.65 21.45 0.29 -58.41 16 21 Si 1.13 49.45 29.90 68.60 2.05 51.50 16 22 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 25 H 0.04 1.11 6.77 -2.39 -0.02 1.09 16 26 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.12 1.25 7.71 -2.38 -0.02 1.23 16 29 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.16 1.44 8.06 -2.91 -0.02 1.41 16 31 H 0.16 1.61 8.06 -2.91 -0.02 1.58 16 32 H 0.14 2.65 8.06 -2.91 -0.02 2.62 16 33 H 0.11 4.08 6.11 -2.91 -0.02 4.07 16 34 H 0.14 5.18 8.14 -2.39 -0.02 5.16 16 35 H 0.14 5.24 6.77 -2.39 -0.02 5.23 16 36 H 0.01 0.35 8.01 -2.39 -0.02 0.33 16 37 H 0.00 0.21 8.01 -2.39 -0.02 0.20 16 38 H 0.25 16.35 7.22 -92.71 -0.67 15.68 16 Total: -1.00 -78.56 324.92 1.32 -77.24 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 1.15 Total: 16.78 kcal Atomic # 6 Polarization: -72.80 SS G_CDS: 3.26 Total: -69.54 kcal Atomic # 7 Polarization: -87.65 SS G_CDS: -0.70 Total: -88.35 kcal Atomic # 8 Polarization: -86.58 SS G_CDS: -4.16 Total: -90.73 kcal Atomic # 14 Polarization: 49.45 SS G_CDS: 2.05 Total: 51.50 kcal Atomic # 16 Polarization: 103.39 SS G_CDS: -0.29 Total: 103.10 kcal Total: -78.56 1.32 -77.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020180207.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.682 kcal (2) G-P(sol) polarization free energy of solvation -78.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds