Wall clock time and date at job start Tue Mar 31 2020 07:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 110.26224 * 2 1 4 4 C 1.53747 * 110.29550 * 122.06574 * 2 1 3 5 5 C 1.51222 * 104.53523 * 118.93331 * 4 2 1 6 6 C 1.38171 * 130.98367 * 180.37090 * 5 4 2 7 7 C 1.38234 * 120.14965 * 180.15569 * 6 5 4 8 8 C 1.38307 * 119.83180 * 359.45378 * 7 6 5 9 9 C 1.37830 * 120.22883 * 0.26606 * 8 7 6 10 10 C 1.38593 * 108.53892 * 359.97438 * 5 4 2 11 11 N 1.39575 * 111.65284 * 0.02562 * 10 5 4 12 12 S 1.65602 * 124.96011 * 179.97438 * 11 10 5 13 13 O 1.42098 * 104.28180 * 206.09306 * 12 11 10 14 14 O 1.42105 * 104.27434 * 333.95064 * 12 11 10 15 15 C 1.81401 * 104.45007 * 90.01774 * 12 11 10 16 16 C 1.52995 * 109.47237 * 180.02562 * 15 12 11 17 17 C 1.50704 * 109.47459 * 179.97438 * 16 15 12 18 18 H 1.08001 * 119.99326 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00172 * 179.97438 * 17 16 15 20 20 N 1.31520 * 120.00085 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00143 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47171 * 60.00202 * 21 19 17 23 23 H 1.48500 * 109.47353 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47091 * 300.00213 * 21 19 17 25 25 H 1.09000 * 109.47711 * 299.38605 * 1 2 3 26 26 H 1.09006 * 109.46967 * 59.39048 * 1 2 3 27 27 H 1.08999 * 109.47325 * 179.38254 * 1 2 3 28 28 H 1.09001 * 110.42356 * 0.16608 * 4 2 1 29 29 H 1.08999 * 110.52131 * 237.74248 * 4 2 1 30 30 H 1.07998 * 119.93149 * 359.91195 * 6 5 4 31 31 H 1.08002 * 120.08692 * 179.74022 * 7 6 5 32 32 H 1.08002 * 119.88132 * 180.27727 * 8 7 6 33 33 H 1.07998 * 119.85754 * 180.02562 * 9 8 7 34 34 H 1.08999 * 109.47399 * 300.00295 * 15 12 11 35 35 H 1.09000 * 109.47369 * 60.00149 * 15 12 11 36 36 H 1.08996 * 109.47415 * 300.00544 * 16 15 12 37 37 H 1.09004 * 109.47391 * 60.00332 * 16 15 12 38 38 H 0.96996 * 119.99785 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9075 1.0225 0.0000 4 6 2.0633 -0.7656 1.2220 5 6 2.8592 -1.9098 0.6354 6 6 3.5620 -2.9312 1.2452 7 6 4.2229 -3.8730 0.4790 8 6 4.1700 -3.7974 -0.9009 9 6 3.4654 -2.7837 -1.5138 10 6 2.7991 -1.8254 -0.7467 11 7 2.0382 -0.7319 -1.1633 12 16 1.7518 -0.3214 -2.7418 13 8 1.5154 1.0792 -2.7024 14 8 2.8611 -0.8575 -3.4501 15 6 0.2312 -1.2118 -3.1724 16 6 -0.1420 -0.9110 -4.6253 17 6 -1.4050 -1.6512 -4.9832 18 1 -1.8929 -2.2736 -4.2477 19 6 -1.9381 -1.5330 -6.2492 20 7 -1.3442 -0.7745 -7.1446 21 14 -3.5040 -2.4499 -6.6926 22 1 -4.6047 -2.0115 -5.7975 23 1 -3.8661 -2.1580 -8.1029 24 1 -3.2856 -3.9098 -6.5302 25 1 -0.3634 0.5042 0.8954 26 1 -0.3633 0.5233 -0.8845 27 1 -0.3634 -1.0276 -0.0111 28 1 1.2372 -1.1456 1.8230 29 1 2.7069 -0.1239 1.8239 30 1 3.5983 -2.9918 2.3229 31 1 4.7754 -4.6686 0.9568 32 1 4.6823 -4.5355 -1.5003 33 1 3.4277 -2.7306 -2.5918 34 1 0.3914 -2.2834 -3.0532 35 1 -0.5768 -0.8901 -2.5153 36 1 -0.3021 0.1605 -4.7449 37 1 0.6660 -1.2331 -5.2822 38 1 -1.7191 -0.6917 -8.0354 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020180209.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:17 Heat of formation + Delta-G solvation = -49.365737 kcal Electronic energy + Delta-G solvation = -21995.054613 eV Core-core repulsion = 18736.221718 eV Total energy + Delta-G solvation = -3258.832895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.57563 -37.15844 -36.54657 -35.62949 -33.97623 -32.43720 -31.32071 -30.91551 -29.28148 -26.56888 -25.64310 -22.84155 -22.00780 -21.48201 -21.19489 -18.94935 -17.71531 -16.73104 -16.44789 -15.94177 -15.71480 -15.25828 -14.97292 -14.66697 -14.47535 -13.80140 -13.58761 -13.31997 -12.94723 -12.91299 -12.55038 -12.49838 -12.38938 -11.89023 -11.80672 -11.77612 -11.59686 -11.44802 -11.20575 -11.08668 -11.01570 -10.69120 -10.60205 -10.43042 -10.41523 -9.77211 -9.26779 -8.79242 -8.54047 -7.85388 -6.16303 -4.22494 0.49621 1.37516 1.44989 2.73796 3.25105 3.30041 3.31813 3.75195 4.12575 4.18252 4.23019 4.34345 4.61240 4.76935 4.93105 5.02560 5.12702 5.18661 5.20289 5.30796 5.38593 5.51600 5.53643 5.60456 5.63261 5.78574 5.83941 5.92899 6.07015 6.21223 6.33692 6.39033 6.46833 6.58690 6.65565 7.06650 7.22217 7.27831 7.76125 8.11595 8.80384 9.42562 10.94668 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.020206 B = 0.004560 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.394198 B = 6139.308351 C = 6442.844949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.142 3.858 3 H 0.095 0.905 4 C -0.077 4.077 5 C -0.141 4.141 6 C -0.080 4.080 7 C -0.152 4.152 8 C -0.086 4.086 9 C -0.153 4.153 10 C 0.172 3.828 11 N -0.940 5.940 12 S 2.584 3.416 13 O -0.951 6.951 14 O -0.950 6.950 15 C -0.583 4.583 16 C 0.030 3.970 17 C -0.521 4.521 18 H 0.062 0.938 19 C 0.059 3.941 20 N -0.890 5.890 21 Si 0.901 3.099 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.145 0.855 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.505 -3.074 18.296 20.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.037 3.963 3 H 0.113 0.887 4 C -0.115 4.115 5 C -0.145 4.145 6 C -0.098 4.098 7 C -0.172 4.172 8 C -0.105 4.105 9 C -0.175 4.175 10 C 0.075 3.925 11 N -0.760 5.760 12 S 2.685 3.315 13 O -0.942 6.942 14 O -0.941 6.941 15 C -0.717 4.717 16 C -0.010 4.010 17 C -0.561 4.561 18 H 0.080 0.920 19 C -0.144 4.144 20 N -0.528 5.528 21 Si 0.728 3.272 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.200 1.200 25 H 0.100 0.900 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.146 0.854 33 H 0.163 0.837 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.996 -2.259 17.492 19.366 hybrid contribution -1.347 -0.836 -0.208 1.599 sum 6.649 -3.095 17.285 18.776 Atomic orbital electron populations 1.22463 0.93903 1.03533 1.04135 1.21428 0.94740 0.96397 0.83696 0.88661 1.21153 0.99096 0.94487 0.96725 1.20113 1.02886 0.98753 0.92776 1.20336 0.96583 0.93425 0.99477 1.20965 1.02239 1.00073 0.93880 1.20872 0.97771 0.97157 0.94691 1.21118 1.00102 0.94804 1.01455 1.18086 0.92786 0.87972 0.93680 1.56775 1.59636 1.34934 1.24639 1.06155 0.78281 0.75747 0.71322 1.93553 1.87210 1.29011 1.84409 1.93534 1.49871 1.80586 1.70084 1.30530 1.16900 1.13121 1.11169 1.18987 0.99003 0.98721 0.84255 1.20929 1.08452 1.29103 0.97590 0.92018 1.25059 0.97717 0.95315 0.96269 1.69944 1.39840 1.38093 1.04914 0.86511 0.82939 0.80154 0.77581 1.20036 1.21009 1.20027 0.89959 0.91143 0.91113 0.89195 0.89483 0.86109 0.85905 0.85422 0.83689 0.85878 0.85856 0.94774 0.94729 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.01 8.59 37.16 0.32 -1.69 16 2 C 0.14 1.75 3.52 -67.52 -0.24 1.51 16 3 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 4 C -0.08 -0.76 6.58 -27.24 -0.18 -0.94 16 5 C -0.14 -1.73 6.23 -104.26 -0.65 -2.38 16 6 C -0.08 -0.84 10.04 -39.61 -0.40 -1.24 16 7 C -0.15 -1.60 10.06 -39.56 -0.40 -1.99 16 8 C -0.09 -1.04 10.02 -39.71 -0.40 -1.44 16 9 C -0.15 -2.30 9.37 -39.19 -0.37 -2.67 16 10 C 0.17 2.58 6.59 -83.67 -0.55 2.03 16 11 N -0.94 -14.52 3.12 -51.68 -0.16 -14.69 16 12 S 2.58 49.02 5.12 -107.50 -0.55 48.47 16 13 O -0.95 -19.99 17.36 -57.54 -1.00 -20.99 16 14 O -0.95 -20.11 15.25 -57.54 -0.88 -20.99 16 15 C -0.58 -11.42 6.12 37.15 0.23 -11.19 16 16 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 17 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 21 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.89 7.07 -51.93 -0.37 0.52 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.09 0.72 7.71 -51.93 -0.40 0.32 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 32 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.15 2.38 6.11 -52.49 -0.32 2.06 16 34 H 0.12 2.21 8.14 -51.92 -0.42 1.79 16 35 H 0.12 2.16 6.88 -51.92 -0.36 1.80 16 36 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 326.64 15.07 4.92 4.92 Total: -1.00 -33.64 326.64 -10.35 -43.99 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -5.21 Total: 1.23 kcal Atomic # 6 Polarization: -29.27 SS G_CDS: -3.18 Total: -32.45 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.58 Total: -40.22 kcal Atomic # 8 Polarization: -40.10 SS G_CDS: -1.88 Total: -41.97 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 49.02 SS G_CDS: -0.55 Total: 48.47 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.64 -10.35 -43.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020180209.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.376 kcal (2) G-P(sol) polarization free energy of solvation -33.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds