Wall clock time and date at job start Tue Mar 31 2020 07:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 110.26224 * 2 1 4 4 C 1.53747 * 110.29550 * 122.06574 * 2 1 3 5 5 C 1.51222 * 104.53523 * 118.93331 * 4 2 1 6 6 C 1.38171 * 130.98367 * 180.37090 * 5 4 2 7 7 C 1.38234 * 120.14965 * 180.15569 * 6 5 4 8 8 C 1.38307 * 119.83180 * 359.45378 * 7 6 5 9 9 C 1.37830 * 120.22883 * 0.26606 * 8 7 6 10 10 C 1.38593 * 108.53892 * 359.97438 * 5 4 2 11 11 N 1.39575 * 111.65284 * 0.02562 * 10 5 4 12 12 S 1.65602 * 124.96011 * 179.97438 * 11 10 5 13 13 O 1.42098 * 104.28180 * 206.09306 * 12 11 10 14 14 O 1.42105 * 104.27434 * 333.95064 * 12 11 10 15 15 C 1.81401 * 104.45007 * 90.01774 * 12 11 10 16 16 C 1.52995 * 109.47237 * 180.02562 * 15 12 11 17 17 C 1.50704 * 109.47459 * 179.97438 * 16 15 12 18 18 H 1.08001 * 119.99326 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00172 * 179.97438 * 17 16 15 20 20 N 1.31520 * 120.00085 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00143 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47171 * 60.00202 * 21 19 17 23 23 H 1.48500 * 109.47353 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47091 * 300.00213 * 21 19 17 25 25 H 1.09000 * 109.47711 * 299.38605 * 1 2 3 26 26 H 1.09006 * 109.46967 * 59.39048 * 1 2 3 27 27 H 1.08999 * 109.47325 * 179.38254 * 1 2 3 28 28 H 1.09001 * 110.42356 * 0.16608 * 4 2 1 29 29 H 1.08999 * 110.52131 * 237.74248 * 4 2 1 30 30 H 1.07998 * 119.93149 * 359.91195 * 6 5 4 31 31 H 1.08002 * 120.08692 * 179.74022 * 7 6 5 32 32 H 1.08002 * 119.88132 * 180.27727 * 8 7 6 33 33 H 1.07998 * 119.85754 * 180.02562 * 9 8 7 34 34 H 1.08999 * 109.47399 * 300.00295 * 15 12 11 35 35 H 1.09000 * 109.47369 * 60.00149 * 15 12 11 36 36 H 1.08996 * 109.47415 * 300.00544 * 16 15 12 37 37 H 1.09004 * 109.47391 * 60.00332 * 16 15 12 38 38 H 0.96996 * 119.99785 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9075 1.0225 0.0000 4 6 2.0633 -0.7656 1.2220 5 6 2.8592 -1.9098 0.6354 6 6 3.5620 -2.9312 1.2452 7 6 4.2229 -3.8730 0.4790 8 6 4.1700 -3.7974 -0.9009 9 6 3.4654 -2.7837 -1.5138 10 6 2.7991 -1.8254 -0.7467 11 7 2.0382 -0.7319 -1.1633 12 16 1.7518 -0.3214 -2.7418 13 8 1.5154 1.0792 -2.7024 14 8 2.8611 -0.8575 -3.4501 15 6 0.2312 -1.2118 -3.1724 16 6 -0.1420 -0.9110 -4.6253 17 6 -1.4050 -1.6512 -4.9832 18 1 -1.8929 -2.2736 -4.2477 19 6 -1.9381 -1.5330 -6.2492 20 7 -1.3442 -0.7745 -7.1446 21 14 -3.5040 -2.4499 -6.6926 22 1 -4.6047 -2.0115 -5.7975 23 1 -3.8661 -2.1580 -8.1029 24 1 -3.2856 -3.9098 -6.5302 25 1 -0.3634 0.5042 0.8954 26 1 -0.3633 0.5233 -0.8845 27 1 -0.3634 -1.0276 -0.0111 28 1 1.2372 -1.1456 1.8230 29 1 2.7069 -0.1239 1.8239 30 1 3.5983 -2.9918 2.3229 31 1 4.7754 -4.6686 0.9568 32 1 4.6823 -4.5355 -1.5003 33 1 3.4277 -2.7306 -2.5918 34 1 0.3914 -2.2834 -3.0532 35 1 -0.5768 -0.8901 -2.5153 36 1 -0.3021 0.1605 -4.7449 37 1 0.6660 -1.2331 -5.2822 38 1 -1.7191 -0.6917 -8.0354 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020180209.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:16 Heat of formation + Delta-G solvation = -71.226220 kcal Electronic energy + Delta-G solvation = -21996.002555 eV Core-core repulsion = 18736.221718 eV Total energy + Delta-G solvation = -3259.780836 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.53480 -38.58177 -37.67452 -37.25893 -35.99374 -33.41595 -33.25299 -31.87498 -30.25511 -27.77903 -27.29058 -24.13142 -23.39836 -22.49630 -22.38347 -20.28889 -19.24061 -18.45258 -17.74270 -17.32425 -16.77047 -16.63786 -16.57219 -16.06710 -15.60352 -15.33487 -14.78239 -14.52579 -14.27634 -13.95492 -13.82056 -13.73046 -13.50886 -13.38113 -13.31322 -13.26054 -12.97470 -12.90148 -12.67017 -12.44826 -12.33059 -12.22701 -12.02316 -11.84931 -11.66199 -11.49973 -11.12366 -10.68030 -9.69902 -8.87137 -8.29855 -6.45044 -1.02467 0.46516 0.49305 1.38947 1.39917 1.42700 1.51149 2.35052 2.56828 2.85524 2.89326 3.03405 3.20490 3.64605 3.81214 3.90775 3.92457 4.07043 4.18677 4.31136 4.35375 4.45935 4.57939 4.60516 4.74983 4.75784 4.90354 5.01927 5.10856 5.14668 5.16014 5.24769 5.29922 5.40284 5.54993 5.62518 5.64545 5.69793 5.99199 6.15561 6.67262 7.25489 8.82295 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.020206 B = 0.004560 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.394198 B = 6139.308351 C = 6442.844949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.127 3.873 3 H 0.094 0.906 4 C -0.067 4.067 5 C -0.138 4.138 6 C -0.075 4.075 7 C -0.142 4.142 8 C -0.095 4.095 9 C -0.186 4.186 10 C 0.134 3.866 11 N -0.938 5.938 12 S 2.606 3.394 13 O -0.978 6.978 14 O -0.981 6.981 15 C -0.579 4.579 16 C 0.024 3.976 17 C -0.541 4.541 18 H 0.075 0.925 19 C -0.001 4.001 20 N -0.933 5.933 21 Si 0.976 3.024 22 H -0.261 1.261 23 H -0.282 1.282 24 H -0.264 1.264 25 H 0.116 0.884 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.118 0.882 29 H 0.112 0.888 30 H 0.159 0.841 31 H 0.158 0.842 32 H 0.144 0.856 33 H 0.116 0.884 34 H 0.137 0.863 35 H 0.145 0.855 36 H 0.009 0.991 37 H 0.007 0.993 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.931 -4.711 21.951 23.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.024 3.976 3 H 0.112 0.888 4 C -0.105 4.105 5 C -0.143 4.143 6 C -0.093 4.093 7 C -0.161 4.161 8 C -0.113 4.113 9 C -0.207 4.207 10 C 0.038 3.962 11 N -0.762 5.762 12 S 2.707 3.293 13 O -0.968 6.968 14 O -0.971 6.971 15 C -0.712 4.712 16 C -0.015 4.015 17 C -0.580 4.580 18 H 0.093 0.907 19 C -0.200 4.200 20 N -0.572 5.572 21 Si 0.799 3.201 22 H -0.186 1.186 23 H -0.208 1.208 24 H -0.188 1.188 25 H 0.134 0.866 26 H 0.065 0.935 27 H 0.094 0.906 28 H 0.136 0.864 29 H 0.130 0.870 30 H 0.177 0.823 31 H 0.175 0.825 32 H 0.161 0.839 33 H 0.134 0.866 34 H 0.155 0.845 35 H 0.163 0.837 36 H 0.027 0.973 37 H 0.025 0.975 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.420 -3.903 21.151 22.752 hybrid contribution -1.052 -0.358 -1.237 1.663 sum 6.368 -4.261 19.914 21.337 Atomic orbital electron populations 1.22536 0.93082 1.03966 1.04716 1.21832 0.95634 0.96574 0.83602 0.88778 1.21240 1.00018 0.93621 0.95611 1.20493 1.02716 0.99633 0.91439 1.20810 0.94992 0.92130 1.01413 1.21413 1.01232 1.00513 0.92960 1.21145 0.97394 0.96675 0.96128 1.21153 1.02316 0.96814 1.00443 1.18374 0.94278 0.88315 0.95266 1.56331 1.60131 1.35949 1.23743 1.05101 0.77312 0.74775 0.72079 1.93506 1.87376 1.30503 1.85427 1.93493 1.50730 1.80874 1.72010 1.30402 1.18661 1.14403 1.07766 1.18820 0.98006 0.96997 0.87643 1.21418 1.09091 1.29262 0.98252 0.90652 1.26119 1.01543 0.96139 0.96174 1.70095 1.41870 1.39839 1.05442 0.85340 0.78381 0.79018 0.77389 1.18593 1.20753 1.18820 0.86557 0.93495 0.90636 0.86385 0.87008 0.82303 0.82472 0.83861 0.86615 0.84469 0.83708 0.97262 0.97504 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.75 8.59 71.98 0.62 -3.13 16 2 C 0.13 2.93 3.52 45.24 0.16 3.09 16 3 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 4 C -0.07 -1.07 6.58 30.27 0.20 -0.87 16 5 C -0.14 -2.99 6.23 -19.63 -0.12 -3.11 16 6 C -0.08 -1.26 10.04 22.25 0.22 -1.03 16 7 C -0.14 -2.47 10.06 22.29 0.22 -2.24 16 8 C -0.09 -2.19 10.02 22.19 0.22 -1.96 16 9 C -0.19 -5.70 9.37 22.52 0.21 -5.49 16 10 C 0.13 3.95 6.59 38.34 0.25 4.21 16 11 N -0.94 -29.12 3.12 -317.41 -0.99 -30.11 16 12 S 2.61 104.16 5.12 -56.49 -0.29 103.87 16 13 O -0.98 -43.15 17.36 -127.65 -2.22 -45.37 16 14 O -0.98 -44.55 15.25 -127.65 -1.95 -46.49 16 15 C -0.58 -23.61 6.12 71.98 0.44 -23.17 16 16 C 0.02 1.31 4.98 29.85 0.15 1.46 16 17 C -0.54 -30.40 9.11 25.60 0.23 -30.17 16 18 H 0.08 3.91 7.74 -2.91 -0.02 3.88 16 19 C 0.00 -0.06 5.46 84.65 0.46 0.41 16 20 N -0.93 -57.07 13.29 21.45 0.28 -56.78 16 21 Si 0.98 43.34 29.54 68.60 2.03 45.36 16 22 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 24 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 25 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.05 1.17 7.07 -2.38 -0.02 1.15 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.12 1.27 7.71 -2.39 -0.02 1.25 16 29 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 31 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 32 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 33 H 0.12 4.14 6.11 -2.91 -0.02 4.12 16 34 H 0.14 5.11 8.14 -2.39 -0.02 5.09 16 35 H 0.14 5.16 6.88 -2.39 -0.02 5.15 16 36 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 38 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -76.92 326.64 1.19 -75.73 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 1.05 Total: 15.82 kcal Atomic # 6 Polarization: -65.30 SS G_CDS: 3.27 Total: -62.02 kcal Atomic # 7 Polarization: -86.19 SS G_CDS: -0.70 Total: -86.90 kcal Atomic # 8 Polarization: -87.70 SS G_CDS: -4.16 Total: -91.86 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: 104.16 SS G_CDS: -0.29 Total: 103.87 kcal Total: -76.92 1.19 -75.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020180209.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.500 kcal (2) G-P(sol) polarization free energy of solvation -76.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds