Wall clock time and date at job start Tue Mar 31 2020 07:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47303 * 2 1 4 4 S 1.81395 * 109.47107 * 119.99920 * 2 1 3 5 5 C 1.81400 * 103.00363 * 174.99746 * 4 2 1 6 6 C 1.50700 * 109.47205 * 179.97438 * 5 4 2 7 7 O 1.21286 * 120.00228 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99575 * 179.97438 * 6 5 4 9 9 C 1.39986 * 119.99597 * 175.49172 * 8 6 5 10 10 C 1.38914 * 120.00328 * 215.12337 * 9 8 6 11 11 C 1.38004 * 120.00321 * 180.02562 * 10 9 8 12 12 C 1.38906 * 119.99637 * 0.02562 * 11 10 9 13 13 O 1.35780 * 119.99544 * 179.97438 * 12 11 10 14 14 C 1.34814 * 117.00386 * 5.34527 * 13 12 11 15 15 H 1.08001 * 119.99395 * 354.96428 * 14 13 12 16 16 C 1.38627 * 120.00361 * 174.96175 * 14 13 12 17 17 N 1.31571 * 119.99963 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00214 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47260 * 89.99770 * 18 16 14 20 20 H 1.48496 * 109.47559 * 210.00076 * 18 16 14 21 21 H 1.48502 * 109.47182 * 330.00306 * 18 16 14 22 22 C 1.38906 * 120.00519 * 0.25484 * 12 11 10 23 23 C 1.37994 * 120.00186 * 359.45181 * 22 12 11 24 24 H 1.08997 * 109.47042 * 300.00538 * 1 2 3 25 25 H 1.09003 * 109.47007 * 59.99564 * 1 2 3 26 26 H 1.08998 * 109.47451 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47256 * 239.99965 * 2 1 3 28 28 H 1.08997 * 109.46831 * 299.99867 * 3 2 1 29 29 H 1.08999 * 109.46993 * 59.99804 * 3 2 1 30 30 H 1.08994 * 109.46987 * 179.97438 * 3 2 1 31 31 H 1.09008 * 109.46689 * 60.00119 * 5 4 2 32 32 H 1.08996 * 109.47188 * 300.00195 * 5 4 2 33 33 H 0.97003 * 119.99962 * 355.49585 * 8 6 5 34 34 H 1.08005 * 120.00053 * 0.02562 * 10 9 8 35 35 H 1.08002 * 120.00231 * 180.02562 * 11 10 9 36 36 H 0.97001 * 120.00332 * 179.97438 * 17 16 14 37 37 H 1.08003 * 119.99924 * 179.70124 * 22 12 11 38 38 H 1.08003 * 120.00725 * 180.27620 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 2.1346 -0.8551 1.4811 5 6 3.9308 -0.8875 1.2290 6 6 4.5894 -1.5775 2.3957 7 8 3.9136 -2.0056 3.3074 8 7 5.9294 -1.7196 2.4256 9 6 6.5493 -2.2751 3.5511 10 6 7.7956 -1.8142 3.9560 11 6 8.4070 -2.3623 5.0652 12 6 7.7764 -3.3751 5.7765 13 8 8.3782 -3.9146 6.8675 14 6 9.5330 -3.3488 7.2721 15 1 9.9808 -2.5586 6.6878 16 6 10.1456 -3.7813 8.4381 17 7 9.5998 -4.7436 9.1501 18 14 11.7454 -2.9968 8.9990 19 1 11.4468 -1.8389 9.8796 20 1 12.5498 -3.9946 9.7490 21 1 12.5114 -2.5330 7.8143 22 6 6.5327 -3.8401 5.3682 23 6 5.9186 -3.2880 4.2627 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1300 1.4425 0.0005 31 1 4.3053 0.1333 1.1524 32 1 4.1590 -1.4282 0.3106 33 1 6.4641 -1.4369 1.6672 34 1 8.2862 -1.0270 3.4028 35 1 9.3758 -2.0037 5.3803 36 1 10.0286 -5.0465 9.9658 37 1 6.0446 -4.6309 5.9185 38 1 4.9496 -3.6464 3.9478 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000024673169.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:38 Heat of formation + Delta-G solvation = -38.596237 kcal Electronic energy + Delta-G solvation = -20166.880216 eV Core-core repulsion = 16908.514321 eV Total energy + Delta-G solvation = -3258.365894 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.13038 -38.65672 -36.50874 -35.11871 -34.02429 -32.22242 -30.58455 -30.22776 -27.79256 -27.23874 -25.31880 -22.47096 -22.26662 -21.59034 -20.25160 -18.08991 -17.58261 -17.13881 -16.54690 -16.36532 -15.65197 -15.21468 -14.58597 -14.48811 -14.36558 -14.10785 -13.61688 -13.58517 -13.56705 -12.98901 -12.81995 -12.65769 -12.43971 -11.94269 -11.80056 -11.68930 -11.64260 -11.57172 -11.41615 -11.03089 -10.75156 -10.46557 -9.97237 -9.82768 -9.65079 -9.25697 -8.72049 -8.22015 -7.85434 -6.95997 -6.44910 -4.03151 1.21649 2.04811 2.19505 2.27358 2.74814 3.12549 3.13574 3.18078 3.25389 3.96446 4.37949 4.45934 4.51643 4.64636 4.72954 4.84960 4.90533 5.09154 5.17978 5.27585 5.32557 5.35358 5.43630 5.53363 5.73687 5.75809 5.77392 6.11545 6.19554 6.25416 6.79698 6.82536 6.95148 7.14111 7.20815 7.39398 7.62838 7.76369 7.99339 8.26876 9.00201 9.70431 10.72958 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.046496 B = 0.002464 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.063640 B =11361.693336 C =11654.803943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.084 4.084 3 C -0.149 4.149 4 S -0.175 6.175 5 C -0.127 4.127 6 C 0.521 3.479 7 O -0.504 6.504 8 N -0.656 5.656 9 C 0.032 3.968 10 C -0.088 4.088 11 C -0.221 4.221 12 C 0.148 3.852 13 O -0.175 6.175 14 C -0.392 4.392 15 H 0.092 0.908 16 C 0.039 3.961 17 N -0.861 5.861 18 Si 0.942 3.058 19 H -0.273 1.273 20 H -0.277 1.277 21 H -0.268 1.268 22 C -0.179 4.179 23 C -0.066 4.066 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.402 0.598 34 H 0.110 0.890 35 H 0.132 0.868 36 H 0.270 0.730 37 H 0.121 0.879 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.532 10.746 -19.960 24.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.213 4.213 3 C -0.208 4.208 4 S 0.051 5.949 5 C -0.279 4.279 6 C 0.305 3.695 7 O -0.379 6.379 8 N -0.301 5.301 9 C -0.061 4.061 10 C -0.108 4.108 11 C -0.241 4.241 12 C 0.094 3.906 13 O -0.079 6.079 14 C -0.468 4.468 15 H 0.109 0.891 16 C -0.166 4.166 17 N -0.496 5.496 18 Si 0.766 3.234 19 H -0.199 1.199 20 H -0.203 1.203 21 H -0.192 1.192 22 C -0.199 4.199 23 C -0.086 4.086 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.104 0.896 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.236 0.764 34 H 0.128 0.872 35 H 0.149 0.851 36 H 0.080 0.920 37 H 0.139 0.861 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.629 9.719 -18.087 23.598 hybrid contribution 1.985 1.164 -1.257 2.622 sum -9.644 10.883 -19.344 24.200 Atomic orbital electron populations 1.21563 0.91594 1.03097 1.02744 1.23264 1.00171 0.98859 0.98978 1.22110 1.01007 0.94640 1.03012 1.87633 1.01133 1.76459 1.29660 1.23498 0.97745 1.05079 1.01547 1.19670 0.82494 0.80179 0.87128 1.90760 1.62657 1.47300 1.37144 1.43066 1.06320 1.62262 1.18490 1.17233 0.95611 1.00073 0.93138 1.20470 0.94474 0.99016 0.96845 1.20970 1.02611 1.02117 0.98363 1.19427 0.91532 0.91408 0.88221 1.83993 1.35762 1.50696 1.37414 1.21315 0.97680 1.19823 1.08014 0.89061 1.25296 0.99642 0.96529 0.95113 1.70046 1.38876 1.25847 1.14804 0.85705 0.79935 0.78635 0.79098 1.19871 1.20264 1.19227 1.20157 0.94685 1.04863 1.00154 1.20750 0.99273 0.93780 0.94783 0.91561 0.91182 0.91548 0.89624 0.91843 0.91171 0.92653 0.87286 0.87388 0.76353 0.87164 0.85064 0.91985 0.86053 0.85264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.85 9.20 37.16 0.34 -0.51 16 2 C -0.08 -0.61 3.38 -26.73 -0.09 -0.70 16 3 C -0.15 -0.91 9.10 37.16 0.34 -0.58 16 4 S -0.17 -1.97 20.29 -107.50 -2.18 -4.15 16 5 C -0.13 -1.21 6.12 36.01 0.22 -0.99 16 6 C 0.52 7.31 7.69 -10.98 -0.08 7.23 16 7 O -0.50 -9.38 13.30 5.55 0.07 -9.30 16 8 N -0.66 -8.73 5.34 -9.82 -0.05 -8.79 16 9 C 0.03 0.56 6.30 -83.63 -0.53 0.04 16 10 C -0.09 -1.57 9.96 -39.42 -0.39 -1.96 16 11 C -0.22 -4.73 9.16 -39.42 -0.36 -5.09 16 12 C 0.15 3.63 6.65 -39.09 -0.26 3.37 16 13 O -0.18 -5.04 9.75 0.00 0.00 -5.04 16 14 C -0.39 -10.93 9.48 30.88 0.29 -10.64 16 15 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 16 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 17 N -0.86 -25.35 13.67 55.48 0.76 -24.59 16 18 Si 0.94 20.45 29.55 -169.99 -5.02 15.42 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 20 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 C -0.18 -3.98 9.98 -39.42 -0.39 -4.38 16 23 C -0.07 -1.32 8.69 -39.41 -0.34 -1.66 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.09 0.54 8.14 -51.92 -0.42 0.12 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.32 6.92 -51.93 -0.36 -0.04 16 31 H 0.11 0.80 7.14 -51.92 -0.37 0.43 16 32 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.40 3.69 8.82 -40.82 -0.36 3.33 16 34 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 35 H 0.13 2.77 5.63 -52.49 -0.30 2.48 16 36 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.12 2.63 8.06 -52.48 -0.42 2.21 16 38 H 0.13 2.55 6.23 -52.48 -0.33 2.22 16 LS Contribution 335.80 15.07 5.06 5.06 Total: -1.00 -33.55 335.80 -7.64 -41.20 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -4.92 Total: 5.09 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -1.35 Total: -14.90 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.71 Total: -33.37 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: 0.07 Total: -14.34 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: -1.97 SS G_CDS: -2.18 Total: -4.15 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.55 -7.64 -41.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024673169.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.601 kcal (2) G-P(sol) polarization free energy of solvation -33.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds