Wall clock time and date at job start Tue Mar 31 2020 07:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47303 * 2 1 4 4 S 1.81395 * 109.47107 * 119.99920 * 2 1 3 5 5 C 1.81400 * 103.00363 * 174.99746 * 4 2 1 6 6 C 1.50700 * 109.47205 * 179.97438 * 5 4 2 7 7 O 1.21286 * 120.00228 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99575 * 179.97438 * 6 5 4 9 9 C 1.39986 * 119.99597 * 175.49172 * 8 6 5 10 10 C 1.38914 * 120.00328 * 215.12337 * 9 8 6 11 11 C 1.38004 * 120.00321 * 180.02562 * 10 9 8 12 12 C 1.38906 * 119.99637 * 0.02562 * 11 10 9 13 13 O 1.35780 * 119.99544 * 179.97438 * 12 11 10 14 14 C 1.34814 * 117.00386 * 5.34527 * 13 12 11 15 15 H 1.08001 * 119.99395 * 354.96428 * 14 13 12 16 16 C 1.38627 * 120.00361 * 174.96175 * 14 13 12 17 17 N 1.31571 * 119.99963 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00214 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47260 * 89.99770 * 18 16 14 20 20 H 1.48496 * 109.47559 * 210.00076 * 18 16 14 21 21 H 1.48502 * 109.47182 * 330.00306 * 18 16 14 22 22 C 1.38906 * 120.00519 * 0.25484 * 12 11 10 23 23 C 1.37994 * 120.00186 * 359.45181 * 22 12 11 24 24 H 1.08997 * 109.47042 * 300.00538 * 1 2 3 25 25 H 1.09003 * 109.47007 * 59.99564 * 1 2 3 26 26 H 1.08998 * 109.47451 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47256 * 239.99965 * 2 1 3 28 28 H 1.08997 * 109.46831 * 299.99867 * 3 2 1 29 29 H 1.08999 * 109.46993 * 59.99804 * 3 2 1 30 30 H 1.08994 * 109.46987 * 179.97438 * 3 2 1 31 31 H 1.09008 * 109.46689 * 60.00119 * 5 4 2 32 32 H 1.08996 * 109.47188 * 300.00195 * 5 4 2 33 33 H 0.97003 * 119.99962 * 355.49585 * 8 6 5 34 34 H 1.08005 * 120.00053 * 0.02562 * 10 9 8 35 35 H 1.08002 * 120.00231 * 180.02562 * 11 10 9 36 36 H 0.97001 * 120.00332 * 179.97438 * 17 16 14 37 37 H 1.08003 * 119.99924 * 179.70124 * 22 12 11 38 38 H 1.08003 * 120.00725 * 180.27620 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 2.1346 -0.8551 1.4811 5 6 3.9308 -0.8875 1.2290 6 6 4.5894 -1.5775 2.3957 7 8 3.9136 -2.0056 3.3074 8 7 5.9294 -1.7196 2.4256 9 6 6.5493 -2.2751 3.5511 10 6 7.7956 -1.8142 3.9560 11 6 8.4070 -2.3623 5.0652 12 6 7.7764 -3.3751 5.7765 13 8 8.3782 -3.9146 6.8675 14 6 9.5330 -3.3488 7.2721 15 1 9.9808 -2.5586 6.6878 16 6 10.1456 -3.7813 8.4381 17 7 9.5998 -4.7436 9.1501 18 14 11.7454 -2.9968 8.9990 19 1 11.4468 -1.8389 9.8796 20 1 12.5498 -3.9946 9.7490 21 1 12.5114 -2.5330 7.8143 22 6 6.5327 -3.8401 5.3682 23 6 5.9186 -3.2880 4.2627 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1300 1.4425 0.0005 31 1 4.3053 0.1333 1.1524 32 1 4.1590 -1.4282 0.3106 33 1 6.4641 -1.4369 1.6672 34 1 8.2862 -1.0270 3.4028 35 1 9.3758 -2.0037 5.3803 36 1 10.0286 -5.0465 9.9658 37 1 6.0446 -4.6309 5.9185 38 1 4.9496 -3.6464 3.9478 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000024673169.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:37 Heat of formation + Delta-G solvation = -60.663073 kcal Electronic energy + Delta-G solvation = -20167.837105 eV Core-core repulsion = 16908.514321 eV Total energy + Delta-G solvation = -3259.322784 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.50014 -40.34281 -38.16958 -35.66413 -35.41897 -34.17889 -31.89175 -31.63184 -29.04959 -27.99307 -27.25368 -23.99658 -23.36461 -22.71208 -21.59560 -19.89730 -19.03418 -18.59484 -17.90849 -17.24550 -16.73783 -16.37401 -16.09501 -15.88282 -15.52189 -15.30485 -15.19063 -14.88226 -14.59429 -14.39544 -14.12668 -13.74934 -13.55088 -13.31910 -13.19450 -13.08976 -12.69353 -12.46298 -12.41119 -12.19447 -12.11207 -12.07594 -11.37657 -11.18935 -10.91276 -10.64242 -10.54576 -9.86388 -8.72001 -8.61456 -8.45528 -6.13344 0.43509 0.51424 0.54496 1.36878 1.44438 1.54861 1.56639 1.59886 2.12060 2.19774 2.81594 3.14735 3.51165 3.62867 3.88978 3.97275 4.04361 4.07972 4.12132 4.23427 4.37328 4.48174 4.60449 4.74323 4.75180 4.81527 4.87900 4.98477 5.05819 5.18111 5.26891 5.28169 5.29829 5.44762 5.54066 5.66486 6.02300 6.14285 6.45954 6.98336 7.16260 7.79023 8.77730 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.046496 B = 0.002464 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.063640 B =11361.693336 C =11654.803943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.062 4.062 3 C -0.148 4.148 4 S -0.263 6.263 5 C -0.104 4.104 6 C 0.518 3.482 7 O -0.553 6.553 8 N -0.642 5.642 9 C 0.061 3.939 10 C -0.075 4.075 11 C -0.221 4.221 12 C 0.109 3.891 13 O -0.231 6.231 14 C -0.413 4.413 15 H 0.108 0.892 16 C -0.027 4.027 17 N -0.923 5.923 18 Si 1.022 2.978 19 H -0.265 1.265 20 H -0.274 1.274 21 H -0.248 1.248 22 C -0.192 4.192 23 C -0.074 4.074 24 H 0.055 0.945 25 H 0.093 0.907 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.082 0.918 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.429 0.571 34 H 0.162 0.838 35 H 0.134 0.866 36 H 0.272 0.728 37 H 0.110 0.890 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.792 13.903 -23.855 29.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.191 4.191 3 C -0.207 4.207 4 S -0.037 6.037 5 C -0.255 4.255 6 C 0.305 3.695 7 O -0.430 6.430 8 N -0.290 5.290 9 C -0.033 4.033 10 C -0.095 4.095 11 C -0.241 4.241 12 C 0.058 3.942 13 O -0.138 6.138 14 C -0.489 4.489 15 H 0.125 0.875 16 C -0.224 4.224 17 N -0.561 5.561 18 Si 0.841 3.159 19 H -0.190 1.190 20 H -0.199 1.199 21 H -0.171 1.171 22 C -0.212 4.212 23 C -0.094 4.094 24 H 0.074 0.926 25 H 0.112 0.888 26 H 0.077 0.923 27 H 0.121 0.879 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.268 0.732 34 H 0.180 0.820 35 H 0.151 0.849 36 H 0.081 0.919 37 H 0.128 0.872 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.909 12.918 -22.086 27.814 hybrid contribution 1.450 0.283 -0.374 1.524 sum -9.459 13.201 -22.459 27.716 Atomic orbital electron populations 1.21608 0.91368 1.02829 1.03338 1.23306 1.00146 0.99036 0.96599 1.22111 1.01569 0.93640 1.03342 1.88021 1.03951 1.77955 1.33771 1.23395 0.95277 1.06601 1.00208 1.20492 0.82172 0.79147 0.87682 1.90764 1.63762 1.49168 1.39353 1.42972 1.06575 1.61536 1.17927 1.17354 0.95055 0.97779 0.93137 1.20857 0.94072 0.99096 0.95486 1.21148 1.02704 1.01161 0.99066 1.19878 0.92593 0.93351 0.88390 1.83963 1.37007 1.52994 1.39837 1.21887 0.97927 1.20344 1.08719 0.87490 1.26663 1.03805 0.97017 0.94896 1.70209 1.41462 1.28523 1.15890 0.84544 0.74710 0.77602 0.79081 1.18992 1.19850 1.17105 1.20260 0.94603 1.05177 1.01197 1.20843 0.99377 0.94616 0.94519 0.92596 0.88813 0.92315 0.87937 0.89926 0.92369 0.91779 0.84169 0.83887 0.73201 0.82021 0.84852 0.91894 0.87222 0.85163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 9.20 71.98 0.66 -0.78 16 2 C -0.06 -0.71 3.38 30.60 0.10 -0.61 16 3 C -0.15 -1.27 9.10 71.98 0.66 -0.62 16 4 S -0.26 -5.46 20.29 -56.49 -1.15 -6.61 16 5 C -0.10 -1.55 6.12 71.24 0.44 -1.12 16 6 C 0.52 12.97 7.69 87.66 0.67 13.65 16 7 O -0.55 -20.06 13.30 -3.05 -0.04 -20.10 16 8 N -0.64 -14.37 5.34 -303.37 -1.62 -15.99 16 9 C 0.06 1.98 6.30 38.17 0.24 2.22 16 10 C -0.08 -2.42 9.96 22.38 0.22 -2.20 16 11 C -0.22 -9.31 9.16 22.37 0.20 -9.11 16 12 C 0.11 5.53 6.65 22.59 0.15 5.68 16 13 O -0.23 -14.14 9.75 -22.91 -0.22 -14.36 16 14 C -0.41 -23.94 9.48 67.91 0.64 -23.29 16 15 H 0.11 5.55 5.20 -2.91 -0.02 5.53 16 16 C -0.03 -1.52 5.49 84.82 0.47 -1.05 16 17 N -0.92 -57.35 13.67 21.61 0.30 -57.06 16 18 Si 1.02 42.58 29.55 68.60 2.03 44.61 16 19 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 20 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 21 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 22 C -0.19 -8.99 9.98 22.37 0.22 -8.77 16 23 C -0.07 -2.93 8.69 22.38 0.19 -2.74 16 24 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 27 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.45 6.92 -2.39 -0.02 0.43 16 31 H 0.14 1.28 7.14 -2.39 -0.02 1.26 16 32 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.43 5.32 8.82 -92.71 -0.82 4.50 16 34 H 0.16 3.61 8.06 -2.91 -0.02 3.58 16 35 H 0.13 5.51 5.63 -2.91 -0.02 5.49 16 36 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 37 H 0.11 5.19 8.06 -2.91 -0.02 5.17 16 38 H 0.13 5.19 6.23 -2.91 -0.02 5.17 16 Total: -1.00 -80.62 335.80 4.44 -76.18 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: 0.27 Total: 22.06 kcal Atomic # 6 Polarization: -33.61 SS G_CDS: 4.88 Total: -28.74 kcal Atomic # 7 Polarization: -71.72 SS G_CDS: -1.32 Total: -73.04 kcal Atomic # 8 Polarization: -34.20 SS G_CDS: -0.26 Total: -34.46 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 16 Polarization: -5.46 SS G_CDS: -1.15 Total: -6.61 kcal Total: -80.62 4.44 -76.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024673169.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.515 kcal (2) G-P(sol) polarization free energy of solvation -80.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds