Wall clock time and date at job start Tue Mar 31 2020 07:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47400 * 2 1 4 4 O 1.42903 * 109.47180 * 120.00595 * 2 1 3 5 5 C 1.35972 * 116.99659 * 156.08918 * 4 2 1 6 6 C 1.38555 * 120.08707 * 355.65387 * 5 4 2 7 7 C 1.38242 * 120.01486 * 180.02562 * 6 5 4 8 8 C 1.38275 * 120.18171 * 359.97438 * 7 6 5 9 9 C 1.38204 * 120.16355 * 359.97166 * 8 7 6 10 10 C 1.38719 * 119.98241 * 0.02777 * 9 8 7 11 11 N 1.40121 * 120.08938 * 179.97438 * 10 9 8 12 12 C 1.34782 * 120.00120 * 34.34920 * 11 10 9 13 13 O 1.21304 * 119.99732 * 355.92808 * 12 11 10 14 14 C 1.50693 * 120.00452 * 175.92971 * 12 11 10 15 15 S 1.80999 * 109.47369 * 179.97438 * 14 12 11 16 16 C 1.76205 * 100.00028 * 180.02562 * 15 14 12 17 17 H 1.07991 * 120.00165 * 359.97438 * 16 15 14 18 18 C 1.38800 * 119.99664 * 180.02562 * 16 15 14 19 19 N 1.31630 * 120.00366 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99730 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47191 * 89.99660 * 20 18 16 22 22 H 1.48507 * 109.46984 * 209.99906 * 20 18 16 23 23 H 1.48500 * 109.46715 * 329.99276 * 20 18 16 24 24 H 1.09008 * 109.46609 * 299.99860 * 1 2 3 25 25 H 1.08996 * 109.47538 * 59.99193 * 1 2 3 26 26 H 1.08997 * 109.47176 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46609 * 240.00140 * 2 1 3 28 28 H 1.09008 * 109.47125 * 60.00456 * 3 2 1 29 29 H 1.08997 * 109.47494 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47431 * 300.00427 * 3 2 1 31 31 H 1.07999 * 119.98902 * 0.02562 * 6 5 4 32 32 H 1.08002 * 119.90729 * 179.97438 * 7 6 5 33 33 H 1.07997 * 119.91659 * 180.02562 * 8 7 6 34 34 H 1.08003 * 120.00586 * 179.74978 * 9 8 7 35 35 H 0.97000 * 120.00550 * 214.34915 * 11 10 9 36 36 H 1.08995 * 109.47267 * 300.00134 * 14 12 11 37 37 H 1.09007 * 109.47162 * 59.99775 * 14 12 11 38 38 H 0.96993 * 120.00183 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6738 1.1667 5 6 3.2564 -1.2054 1.1054 6 6 3.9728 -1.1606 -0.0797 7 6 5.2434 -1.7020 -0.1406 8 6 5.8033 -2.2889 0.9793 9 6 5.0957 -2.3367 2.1655 10 6 3.8203 -1.7955 2.2342 11 7 3.1007 -1.8432 3.4356 12 6 3.7478 -1.7390 4.6133 13 8 4.9591 -1.6783 4.6365 14 6 2.9666 -1.6980 5.9013 15 16 4.1106 -1.5568 7.2967 16 6 2.9621 -1.5315 8.6327 17 1 1.9023 -1.5950 8.4350 18 6 3.4194 -1.4289 9.9392 19 7 4.7111 -1.3509 10.1802 20 14 2.2018 -1.4027 11.3556 21 1 1.9485 -2.7915 11.8163 22 1 2.7621 -0.6042 12.4753 23 1 0.9270 -0.7915 10.9011 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8901 28 1 1.6768 1.9563 0.8901 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 3.5386 -0.7026 -0.9561 32 1 5.8001 -1.6665 -1.0653 33 1 6.7963 -2.7102 0.9270 34 1 5.5339 -2.7993 3.0375 35 1 2.1369 -1.9512 3.4197 36 1 2.2961 -0.8387 5.8923 37 1 2.3829 -2.6132 6.0015 38 1 5.0307 -1.2796 11.0932 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032287317.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:33 Heat of formation + Delta-G solvation = -50.790034 kcal Electronic energy + Delta-G solvation = -20759.447030 eV Core-core repulsion = 17500.552373 eV Total energy + Delta-G solvation = -3258.894657 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.75278 -39.25356 -37.46573 -34.56143 -33.27851 -32.43486 -30.64842 -29.81405 -28.07793 -27.55611 -25.49016 -23.79544 -22.43115 -21.18621 -20.13066 -18.65635 -17.84993 -17.09783 -16.53072 -15.80324 -15.55866 -15.05000 -14.99234 -14.80596 -14.46320 -14.09492 -13.89372 -13.40491 -13.29502 -12.96008 -12.64680 -12.62074 -12.56901 -12.17756 -11.95680 -11.77852 -11.59321 -11.08493 -11.06514 -11.02840 -10.82939 -10.75975 -10.20972 -9.83497 -9.38785 -9.07064 -8.57492 -8.26202 -7.77866 -6.51348 -6.22326 -3.93215 1.28917 1.39704 2.89988 2.97906 3.04542 3.22566 3.27803 3.31858 3.65985 3.82672 4.19551 4.43963 4.58796 4.67244 4.87173 4.89484 4.99600 5.13050 5.18176 5.21505 5.33151 5.41315 5.42521 5.47664 5.53517 5.70337 5.78058 5.84893 5.87468 5.88064 6.11485 6.15961 6.26006 6.50435 6.62687 6.86591 7.35446 7.59055 7.61449 8.34774 8.49020 9.23099 10.85128 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.021092 B = 0.003357 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.208908 B = 8338.548702 C = 9367.758976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.078 3.922 3 C -0.180 4.180 4 O -0.311 6.311 5 C 0.101 3.899 6 C -0.197 4.197 7 C -0.103 4.103 8 C -0.138 4.138 9 C -0.087 4.087 10 C 0.128 3.872 11 N -0.671 5.671 12 C 0.532 3.468 13 O -0.501 6.501 14 C -0.152 4.152 15 S -0.057 6.057 16 C -0.536 4.536 17 H 0.073 0.927 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.129 0.871 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.149 0.851 35 H 0.411 0.589 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.469 0.984 -23.636 24.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.022 3.978 3 C -0.237 4.237 4 O -0.225 6.225 5 C 0.054 3.946 6 C -0.216 4.216 7 C -0.122 4.122 8 C -0.156 4.156 9 C -0.107 4.107 10 C 0.033 3.967 11 N -0.318 5.318 12 C 0.320 3.680 13 O -0.374 6.374 14 C -0.303 4.303 15 S 0.170 5.830 16 C -0.684 4.684 17 H 0.091 0.909 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.202 1.202 22 H -0.207 1.207 23 H -0.197 1.197 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.147 0.853 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.167 0.833 35 H 0.247 0.753 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.483 1.128 -23.218 23.673 hybrid contribution -2.573 0.053 0.631 2.650 sum -7.056 1.181 -22.586 23.692 Atomic orbital electron populations 1.21852 0.92462 1.03152 1.03121 1.22418 0.95296 0.92570 0.87528 1.22357 1.02306 0.95965 1.03088 1.86093 1.28188 1.68949 1.39312 1.18729 0.85811 0.96120 0.93908 1.21006 0.96794 1.07057 0.96727 1.20877 0.94600 0.98148 0.98551 1.20995 1.00425 1.01771 0.92452 1.21305 0.92844 0.97554 0.99025 1.17161 0.93762 1.01351 0.84427 1.43475 1.11239 1.73485 1.03592 1.20504 0.88457 0.74804 0.84256 1.90687 1.13802 1.46444 1.86499 1.23529 1.04434 1.05301 0.97034 1.85388 1.08320 1.96122 0.93203 1.22868 0.94421 1.58654 0.92497 0.90851 1.24990 0.95787 0.94486 0.98277 1.70012 1.12665 1.46527 1.21074 0.86160 0.80402 0.78284 0.80614 1.20247 1.20746 1.19671 0.91319 0.90606 0.91651 0.90899 0.91314 0.91804 0.91154 0.85294 0.85999 0.85620 0.83310 0.75293 0.88848 0.88872 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.56 37.16 0.36 -0.65 16 2 C 0.08 0.66 2.87 -26.73 -0.08 0.58 16 3 C -0.18 -1.45 9.31 37.16 0.35 -1.10 16 4 O -0.31 -3.69 9.36 -19.65 -0.18 -3.87 16 5 C 0.10 1.32 6.57 -39.07 -0.26 1.06 16 6 C -0.20 -2.15 8.43 -39.46 -0.33 -2.48 16 7 C -0.10 -1.10 10.04 -39.57 -0.40 -1.49 16 8 C -0.14 -1.69 10.04 -39.58 -0.40 -2.09 16 9 C -0.09 -1.32 8.69 -39.42 -0.34 -1.66 16 10 C 0.13 1.94 6.33 -83.49 -0.53 1.41 16 11 N -0.67 -10.36 5.20 -9.75 -0.05 -10.41 16 12 C 0.53 10.23 7.69 -10.99 -0.08 10.15 16 13 O -0.50 -11.26 13.28 5.54 0.07 -11.18 16 14 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 15 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 16 C -0.54 -15.27 9.50 30.94 0.29 -14.97 16 17 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 20 Si 0.92 21.41 29.55 -169.99 -5.02 16.38 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 25 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.53 5.91 -51.92 -0.31 0.22 16 28 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 29 H 0.06 0.58 7.50 -51.93 -0.39 0.19 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.13 1.08 5.75 -52.49 -0.30 0.78 16 32 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 34 H 0.15 2.53 6.20 -52.48 -0.33 2.20 16 35 H 0.41 5.28 8.56 -40.82 -0.35 4.93 16 36 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 37 H 0.09 1.73 8.14 -51.91 -0.42 1.30 16 38 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 336.31 15.07 5.07 5.07 Total: -1.00 -33.76 336.31 -7.91 -41.67 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -5.02 Total: 3.62 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -1.29 Total: -12.12 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.68 Total: -35.82 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.11 Total: -15.06 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.76 -7.91 -41.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032287317.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.119 kcal (2) G-P(sol) polarization free energy of solvation -33.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds