Wall clock time and date at job start Tue Mar 31 2020 07:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47400 * 2 1 4 4 O 1.42903 * 109.47180 * 120.00595 * 2 1 3 5 5 C 1.35972 * 116.99659 * 156.08918 * 4 2 1 6 6 C 1.38555 * 120.08707 * 355.65387 * 5 4 2 7 7 C 1.38242 * 120.01486 * 180.02562 * 6 5 4 8 8 C 1.38275 * 120.18171 * 359.97438 * 7 6 5 9 9 C 1.38204 * 120.16355 * 359.97166 * 8 7 6 10 10 C 1.38719 * 119.98241 * 0.02777 * 9 8 7 11 11 N 1.40121 * 120.08938 * 179.97438 * 10 9 8 12 12 C 1.34782 * 120.00120 * 34.34920 * 11 10 9 13 13 O 1.21304 * 119.99732 * 355.92808 * 12 11 10 14 14 C 1.50693 * 120.00452 * 175.92971 * 12 11 10 15 15 S 1.80999 * 109.47369 * 179.97438 * 14 12 11 16 16 C 1.76205 * 100.00028 * 180.02562 * 15 14 12 17 17 H 1.07991 * 120.00165 * 359.97438 * 16 15 14 18 18 C 1.38800 * 119.99664 * 180.02562 * 16 15 14 19 19 N 1.31630 * 120.00366 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99730 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47191 * 89.99660 * 20 18 16 22 22 H 1.48507 * 109.46984 * 209.99906 * 20 18 16 23 23 H 1.48500 * 109.46715 * 329.99276 * 20 18 16 24 24 H 1.09008 * 109.46609 * 299.99860 * 1 2 3 25 25 H 1.08996 * 109.47538 * 59.99193 * 1 2 3 26 26 H 1.08997 * 109.47176 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46609 * 240.00140 * 2 1 3 28 28 H 1.09008 * 109.47125 * 60.00456 * 3 2 1 29 29 H 1.08997 * 109.47494 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47431 * 300.00427 * 3 2 1 31 31 H 1.07999 * 119.98902 * 0.02562 * 6 5 4 32 32 H 1.08002 * 119.90729 * 179.97438 * 7 6 5 33 33 H 1.07997 * 119.91659 * 180.02562 * 8 7 6 34 34 H 1.08003 * 120.00586 * 179.74978 * 9 8 7 35 35 H 0.97000 * 120.00550 * 214.34915 * 11 10 9 36 36 H 1.08995 * 109.47267 * 300.00134 * 14 12 11 37 37 H 1.09007 * 109.47162 * 59.99775 * 14 12 11 38 38 H 0.96993 * 120.00183 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6738 1.1667 5 6 3.2564 -1.2054 1.1054 6 6 3.9728 -1.1606 -0.0797 7 6 5.2434 -1.7020 -0.1406 8 6 5.8033 -2.2889 0.9793 9 6 5.0957 -2.3367 2.1655 10 6 3.8203 -1.7955 2.2342 11 7 3.1007 -1.8432 3.4356 12 6 3.7478 -1.7390 4.6133 13 8 4.9591 -1.6783 4.6365 14 6 2.9666 -1.6980 5.9013 15 16 4.1106 -1.5568 7.2967 16 6 2.9621 -1.5315 8.6327 17 1 1.9023 -1.5950 8.4350 18 6 3.4194 -1.4289 9.9392 19 7 4.7111 -1.3509 10.1802 20 14 2.2018 -1.4027 11.3556 21 1 1.9485 -2.7915 11.8163 22 1 2.7621 -0.6042 12.4753 23 1 0.9270 -0.7915 10.9011 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8901 28 1 1.6768 1.9563 0.8901 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 3.5386 -0.7026 -0.9561 32 1 5.8001 -1.6665 -1.0653 33 1 6.7963 -2.7102 0.9270 34 1 5.5339 -2.7993 3.0375 35 1 2.1369 -1.9512 3.4197 36 1 2.2961 -0.8387 5.8923 37 1 2.3829 -2.6132 6.0015 38 1 5.0307 -1.2796 11.0932 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032287317.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:33 Heat of formation + Delta-G solvation = -72.524494 kcal Electronic energy + Delta-G solvation = -20760.389507 eV Core-core repulsion = 17500.552373 eV Total energy + Delta-G solvation = -3259.837134 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.82953 -40.47491 -38.46405 -35.83744 -34.59811 -34.01142 -31.93900 -30.89037 -29.35563 -28.13142 -27.66514 -24.72868 -23.48545 -22.13788 -21.34848 -19.97456 -19.44312 -18.19146 -18.00347 -16.90050 -16.88979 -16.43121 -16.27230 -16.22185 -15.71774 -15.36280 -15.01523 -14.75139 -14.51075 -14.21742 -13.91186 -13.56398 -13.24965 -13.17107 -13.15460 -12.89843 -12.82858 -12.69111 -12.60733 -12.46990 -11.81667 -11.74639 -11.53836 -11.44100 -11.15147 -10.86373 -10.31768 -9.58704 -8.84820 -8.67800 -8.35926 -6.14504 0.25425 0.42588 1.21833 1.42256 1.43666 1.52213 1.56550 2.08974 2.23453 2.25809 2.82340 2.98403 3.27080 3.78008 3.82835 3.87045 3.98107 4.09179 4.18071 4.22866 4.29832 4.44098 4.47119 4.56012 4.69063 4.72321 4.82587 4.89778 4.96953 5.14178 5.26217 5.29161 5.32654 5.40950 5.48763 5.59843 5.85754 6.18744 6.33228 6.46415 7.05295 7.08392 8.73370 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.021092 B = 0.003357 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.208908 B = 8338.548702 C = 9367.758976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.069 3.931 3 C -0.178 4.178 4 O -0.326 6.326 5 C 0.104 3.896 6 C -0.192 4.192 7 C -0.089 4.089 8 C -0.146 4.146 9 C -0.109 4.109 10 C 0.092 3.908 11 N -0.652 5.652 12 C 0.534 3.466 13 O -0.542 6.542 14 C -0.128 4.128 15 S -0.142 6.142 16 C -0.549 4.549 17 H 0.083 0.917 18 C 0.014 3.986 19 N -0.911 5.911 20 Si 0.999 3.001 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.258 1.258 24 H 0.058 0.942 25 H 0.100 0.900 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.096 0.904 31 H 0.161 0.839 32 H 0.160 0.840 33 H 0.142 0.858 34 H 0.119 0.881 35 H 0.423 0.577 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.554 1.447 -26.055 27.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.014 3.986 3 C -0.235 4.235 4 O -0.241 6.241 5 C 0.056 3.944 6 C -0.211 4.211 7 C -0.107 4.107 8 C -0.164 4.164 9 C -0.130 4.130 10 C -0.003 4.003 11 N -0.299 5.299 12 C 0.321 3.679 13 O -0.418 6.418 14 C -0.279 4.279 15 S 0.085 5.915 16 C -0.696 4.696 17 H 0.101 0.899 18 C -0.190 4.190 19 N -0.547 5.547 20 Si 0.821 3.179 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.182 1.182 24 H 0.077 0.923 25 H 0.119 0.881 26 H 0.083 0.917 27 H 0.109 0.891 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.115 0.885 31 H 0.178 0.822 32 H 0.178 0.822 33 H 0.160 0.840 34 H 0.137 0.863 35 H 0.261 0.739 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.606 1.588 -25.690 26.573 hybrid contribution -1.943 -0.072 1.147 2.258 sum -8.549 1.516 -24.543 26.033 Atomic orbital electron populations 1.21882 0.91184 1.03384 1.03873 1.22765 0.96312 0.92561 0.87011 1.22361 1.01591 0.95881 1.03702 1.86091 1.27564 1.69031 1.41372 1.18781 0.86418 0.95465 0.93692 1.21407 0.96672 1.06174 0.96860 1.21317 0.94488 0.95807 0.99115 1.21241 1.01088 1.02043 0.92049 1.21221 0.93564 0.98810 0.99359 1.17363 0.94328 1.03827 0.84764 1.43128 1.11710 1.72146 1.02876 1.20255 0.87820 0.74856 0.84940 1.90679 1.15348 1.48745 1.87056 1.23340 1.02849 1.07022 0.94663 1.85543 1.12498 1.96479 0.96990 1.23213 0.94748 1.58687 0.93002 0.89879 1.26128 0.97855 0.93639 1.01418 1.70175 1.15057 1.47607 1.21884 0.84941 0.77847 0.78726 0.76391 1.19229 1.20237 1.18229 0.92304 0.88121 0.91683 0.89062 0.92783 0.92840 0.88513 0.82151 0.82236 0.83975 0.86307 0.73884 0.87168 0.86791 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.56 71.98 0.69 -0.90 16 2 C 0.07 0.97 2.87 30.59 0.09 1.06 16 3 C -0.18 -2.43 9.31 71.98 0.67 -1.76 16 4 O -0.33 -7.19 9.36 -93.23 -0.87 -8.06 16 5 C 0.10 2.54 6.57 22.60 0.15 2.69 16 6 C -0.19 -3.60 8.43 22.35 0.19 -3.42 16 7 C -0.09 -1.62 10.04 22.28 0.22 -1.40 16 8 C -0.15 -3.44 10.04 22.27 0.22 -3.22 16 9 C -0.11 -3.42 8.69 22.38 0.19 -3.22 16 10 C 0.09 2.78 6.33 38.19 0.24 3.02 16 11 N -0.65 -20.39 5.20 -303.12 -1.57 -21.96 16 12 C 0.53 21.21 7.69 87.65 0.67 21.88 16 13 O -0.54 -25.75 13.28 -3.11 -0.04 -25.79 16 14 C -0.13 -5.27 6.16 71.23 0.44 -4.83 16 15 S -0.14 -8.00 20.57 -56.49 -1.16 -9.16 16 16 C -0.55 -31.65 9.50 67.95 0.65 -31.01 16 17 H 0.08 4.45 7.80 -2.92 -0.02 4.43 16 18 C 0.01 0.83 5.49 84.86 0.47 1.30 16 19 N -0.91 -56.27 13.22 21.65 0.29 -55.98 16 20 Si 1.00 43.87 29.55 68.60 2.03 45.90 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 22 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 24 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 25 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.09 0.96 5.91 -2.38 -0.01 0.94 16 28 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.05 0.84 7.50 -2.39 -0.02 0.82 16 30 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.16 1.95 5.75 -2.91 -0.02 1.94 16 32 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 33 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 34 H 0.12 4.39 6.20 -2.91 -0.02 4.37 16 35 H 0.42 10.72 8.56 -92.71 -0.79 9.93 16 36 H 0.11 4.16 8.14 -2.40 -0.02 4.14 16 37 H 0.11 4.20 8.14 -2.39 -0.02 4.18 16 38 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -76.67 336.31 3.84 -72.83 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.28 Total: 22.02 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: 4.89 Total: -19.80 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -1.29 Total: -77.94 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -0.91 Total: -33.85 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -8.00 SS G_CDS: -1.16 Total: -9.16 kcal Total: -76.67 3.84 -72.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032287317.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.308 kcal (2) G-P(sol) polarization free energy of solvation -76.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds