Wall clock time and date at job start Tue Mar 31 2020 07:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46702 * 2 1 4 4 H 1.09003 * 109.47364 * 54.99748 * 3 2 1 5 5 C 1.52997 * 109.47084 * 174.99424 * 3 2 1 6 6 O 1.42911 * 109.46999 * 54.99957 * 5 3 2 7 7 N 1.46499 * 109.47044 * 294.99496 * 3 2 1 8 8 C 1.34778 * 119.99867 * 85.00738 * 7 3 2 9 9 O 1.21609 * 119.99939 * 359.97438 * 8 7 3 10 10 C 1.47421 * 119.99900 * 180.02562 * 8 7 3 11 11 C 1.39681 * 120.21901 * 359.96940 * 10 8 7 12 12 C 1.37808 * 119.94286 * 180.02562 * 11 10 8 13 13 C 1.38654 * 120.37767 * 0.02562 * 12 11 10 14 14 C 1.37909 * 120.44334 * 359.97438 * 13 12 11 15 15 C 1.39109 * 120.04959 * 0.02562 * 14 13 12 16 16 S 1.76204 * 120.19269 * 179.97438 * 15 14 13 17 17 C 1.76202 * 99.99694 * 6.88400 * 16 15 14 18 18 H 1.07998 * 120.00125 * 5.65292 * 17 16 15 19 19 C 1.38802 * 119.99933 * 185.66292 * 17 16 15 20 20 N 1.31556 * 120.00301 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00198 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46703 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.46908 * 119.99433 * 21 19 17 24 24 H 1.48498 * 109.47055 * 240.00027 * 21 19 17 25 25 H 1.09003 * 109.47028 * 60.00357 * 1 2 3 26 26 H 1.08997 * 109.46965 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47382 * 300.00246 * 1 2 3 28 28 H 1.08996 * 109.47382 * 239.99754 * 2 1 3 29 29 H 1.08994 * 109.46789 * 119.99670 * 2 1 3 30 30 H 1.09002 * 109.47488 * 174.99608 * 5 3 2 31 31 H 1.09001 * 109.47434 * 295.00247 * 5 3 2 32 32 H 0.96694 * 114.00148 * 179.97438 * 6 5 3 33 33 H 0.96999 * 120.00020 * 264.99893 * 7 3 2 34 34 H 1.08003 * 120.02265 * 0.02562 * 11 10 8 35 35 H 1.07998 * 119.80890 * 180.02562 * 12 11 10 36 36 H 1.08007 * 119.77710 * 180.27598 * 13 12 11 37 37 H 1.08005 * 119.97866 * 180.02562 * 14 13 12 38 38 H 0.96996 * 120.00217 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5647 1.4445 0.1259 6 8 4.1294 0.6405 -0.9120 7 7 1.6524 2.0975 -1.2519 8 6 0.4351 2.6644 -1.3670 9 8 -0.3417 2.6319 -0.4320 10 6 0.0450 3.3229 -2.6270 11 6 0.9335 3.3625 -3.7040 12 6 0.5630 3.9801 -4.8790 13 6 -0.6886 4.5644 -4.9996 14 6 -1.5782 4.5345 -3.9463 15 6 -1.2231 3.9159 -2.7519 16 16 -2.3565 3.8761 -1.4034 17 6 -3.7841 4.5529 -2.1837 18 1 -3.7732 4.7600 -3.2435 19 6 -4.9227 4.8200 -1.4360 20 7 -4.9362 4.5674 -0.1450 21 14 -6.4359 5.5382 -2.2630 22 1 -6.1653 5.7287 -3.7107 23 1 -7.5817 4.6092 -2.0912 24 1 -6.7633 6.8479 -1.6446 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.9354 2.4657 0.0367 31 1 3.8498 1.0379 1.0962 32 1 5.0951 0.5964 -0.8940 33 1 2.2720 2.1232 -1.9978 34 1 1.9100 2.9095 -3.6159 35 1 1.2516 4.0091 -5.7105 36 1 -0.9705 5.0419 -5.9265 37 1 -2.5514 4.9916 -4.0486 38 1 -5.7319 4.7537 0.3773 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035202258.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:51 Heat of formation + Delta-G solvation = -64.169389 kcal Electronic energy + Delta-G solvation = -21476.599024 eV Core-core repulsion = 18217.124195 eV Total energy + Delta-G solvation = -3259.474829 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.76740 -37.92540 -36.99192 -34.73916 -32.73200 -32.26634 -30.30437 -30.19201 -28.46123 -25.80132 -23.70363 -23.02846 -21.91933 -20.66438 -20.00790 -18.13927 -17.63834 -17.09886 -15.98689 -15.73048 -15.19085 -15.09209 -14.58154 -14.31484 -14.06065 -13.78767 -13.66162 -13.16269 -12.94203 -12.70609 -12.39547 -12.16123 -11.78339 -11.56379 -11.24653 -11.20162 -11.11607 -10.91129 -10.81561 -10.55302 -10.29868 -10.19491 -9.75716 -9.58880 -9.45399 -8.71790 -8.60911 -8.29288 -8.00877 -6.50035 -6.44167 -4.14072 1.57747 2.05511 3.12130 3.13454 3.21678 3.44689 3.55021 3.59051 4.08327 4.09988 4.53455 4.77361 4.96724 4.99009 5.16445 5.19962 5.36385 5.41933 5.43267 5.53068 5.63487 5.76696 5.90447 6.04789 6.15947 6.18034 6.29133 6.42588 6.52157 6.63456 6.83074 6.90070 6.92053 7.07251 7.16789 7.38394 7.47450 7.62496 8.02023 8.18776 8.87417 9.02400 10.59050 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019220 B = 0.004781 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.461167 B = 5855.349356 C = 7026.053150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C 0.149 3.851 4 H 0.099 0.901 5 C 0.068 3.932 6 O -0.569 6.569 7 N -0.729 5.729 8 C 0.552 3.448 9 O -0.506 6.506 10 C -0.177 4.177 11 C -0.061 4.061 12 C -0.187 4.187 13 C -0.077 4.077 14 C -0.154 4.154 15 C -0.057 4.057 16 S 0.185 5.815 17 C -0.595 4.595 18 H 0.091 0.909 19 C 0.083 3.917 20 N -0.858 5.858 21 Si 0.918 3.082 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.277 1.277 25 H 0.063 0.937 26 H 0.040 0.960 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.377 0.623 33 H 0.398 0.602 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.138 0.862 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.130 -5.021 -2.488 17.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C 0.044 3.956 4 H 0.117 0.883 5 C -0.010 4.010 6 O -0.374 6.374 7 N -0.383 5.383 8 C 0.341 3.659 9 O -0.383 6.383 10 C -0.192 4.192 11 C -0.081 4.081 12 C -0.212 4.212 13 C -0.100 4.100 14 C -0.179 4.179 15 C -0.177 4.177 16 S 0.449 5.551 17 C -0.742 4.742 18 H 0.108 0.892 19 C -0.127 4.127 20 N -0.491 5.491 21 Si 0.744 3.256 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.203 1.203 25 H 0.082 0.918 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.224 0.776 33 H 0.233 0.767 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.156 0.844 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.616 -5.471 -0.321 15.610 hybrid contribution -0.100 1.010 -2.088 2.322 sum 14.517 -4.460 -2.409 15.377 Atomic orbital electron populations 1.21841 0.94499 1.00315 1.03876 1.21823 0.97056 0.95631 1.01885 1.21040 0.91472 0.94279 0.88802 0.88329 1.22530 0.93646 0.94290 0.90581 1.86518 1.25196 1.72345 1.53309 1.45826 1.17147 1.59165 1.16190 1.18262 0.81300 0.78330 0.87992 1.90785 1.49656 1.58301 1.39547 1.19151 0.95978 1.09186 0.94906 1.20922 0.97266 0.97105 0.92818 1.20632 0.97549 1.05117 0.97886 1.21080 0.93701 0.97424 0.97747 1.21434 1.01082 1.02544 0.92884 1.23098 0.97511 0.96001 1.01044 1.84729 0.99066 1.64840 1.06465 1.24106 1.01130 1.50082 0.98875 0.89159 1.25087 0.98917 0.94077 0.94655 1.69983 1.29778 1.43482 1.05871 0.86115 0.80989 0.78800 0.79725 1.19168 1.20248 1.20265 0.91789 0.94061 0.92030 0.91449 0.92103 0.92997 0.92403 0.77608 0.76702 0.87148 0.87136 0.87082 0.84417 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 8.51 37.16 0.32 -2.08 16 2 C -0.13 -1.65 5.33 -26.73 -0.14 -1.79 16 3 C 0.15 1.92 2.66 -67.93 -0.18 1.74 16 4 H 0.10 1.41 7.58 -51.93 -0.39 1.01 16 5 C 0.07 0.61 6.79 37.16 0.25 0.86 16 6 O -0.57 -4.93 12.61 -35.23 -0.44 -5.38 16 7 N -0.73 -10.70 4.96 -54.88 -0.27 -10.97 16 8 C 0.55 10.60 6.32 -12.52 -0.08 10.52 16 9 O -0.51 -11.34 10.90 5.27 0.06 -11.28 16 10 C -0.18 -3.53 5.89 -104.75 -0.62 -4.15 16 11 C -0.06 -1.00 9.53 -39.20 -0.37 -1.37 16 12 C -0.19 -2.96 10.02 -39.59 -0.40 -3.35 16 13 C -0.08 -1.35 10.02 -39.55 -0.40 -1.74 16 14 C -0.15 -3.27 9.22 -39.38 -0.36 -3.63 16 15 C -0.06 -1.30 6.15 -38.39 -0.24 -1.54 16 16 S 0.18 4.94 18.56 -107.50 -2.00 2.94 16 17 C -0.60 -16.47 9.00 30.94 0.28 -16.20 16 18 H 0.09 2.38 4.98 -52.49 -0.26 2.12 16 19 C 0.08 2.29 5.49 -17.46 -0.10 2.20 16 20 N -0.86 -24.78 13.22 55.49 0.73 -24.05 16 21 Si 0.92 20.78 29.55 -169.99 -5.02 15.76 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 25 H 0.06 1.22 5.64 -51.93 -0.29 0.92 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 1.07 7.84 -51.93 -0.41 0.66 16 28 H 0.07 0.91 7.73 -51.93 -0.40 0.51 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.38 1.53 9.12 45.56 0.42 1.95 16 33 H 0.40 5.08 6.41 -40.82 -0.26 4.82 16 34 H 0.11 1.42 6.40 -52.48 -0.34 1.08 16 35 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 37 H 0.14 3.04 5.04 -52.48 -0.26 2.78 16 38 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 323.80 15.07 4.88 4.88 Total: -1.00 -32.25 323.80 -7.97 -40.23 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -3.87 Total: 8.40 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: -2.03 Total: -20.53 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 0.46 Total: -35.02 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.39 Total: -16.66 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 4.94 SS G_CDS: -2.00 Total: 2.94 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.25 -7.97 -40.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035202258.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.943 kcal (2) G-P(sol) polarization free energy of solvation -32.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds