Wall clock time and date at job start Tue Mar 31 2020 07:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46702 * 2 1 4 4 H 1.09003 * 109.47364 * 54.99748 * 3 2 1 5 5 C 1.52997 * 109.47084 * 174.99424 * 3 2 1 6 6 O 1.42911 * 109.46999 * 54.99957 * 5 3 2 7 7 N 1.46499 * 109.47044 * 294.99496 * 3 2 1 8 8 C 1.34778 * 119.99867 * 85.00738 * 7 3 2 9 9 O 1.21609 * 119.99939 * 359.97438 * 8 7 3 10 10 C 1.47421 * 119.99900 * 180.02562 * 8 7 3 11 11 C 1.39681 * 120.21901 * 359.96940 * 10 8 7 12 12 C 1.37808 * 119.94286 * 180.02562 * 11 10 8 13 13 C 1.38654 * 120.37767 * 0.02562 * 12 11 10 14 14 C 1.37909 * 120.44334 * 359.97438 * 13 12 11 15 15 C 1.39109 * 120.04959 * 0.02562 * 14 13 12 16 16 S 1.76204 * 120.19269 * 179.97438 * 15 14 13 17 17 C 1.76202 * 99.99694 * 6.88400 * 16 15 14 18 18 H 1.07998 * 120.00125 * 5.65292 * 17 16 15 19 19 C 1.38802 * 119.99933 * 185.66292 * 17 16 15 20 20 N 1.31556 * 120.00301 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00198 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46703 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.46908 * 119.99433 * 21 19 17 24 24 H 1.48498 * 109.47055 * 240.00027 * 21 19 17 25 25 H 1.09003 * 109.47028 * 60.00357 * 1 2 3 26 26 H 1.08997 * 109.46965 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47382 * 300.00246 * 1 2 3 28 28 H 1.08996 * 109.47382 * 239.99754 * 2 1 3 29 29 H 1.08994 * 109.46789 * 119.99670 * 2 1 3 30 30 H 1.09002 * 109.47488 * 174.99608 * 5 3 2 31 31 H 1.09001 * 109.47434 * 295.00247 * 5 3 2 32 32 H 0.96694 * 114.00148 * 179.97438 * 6 5 3 33 33 H 0.96999 * 120.00020 * 264.99893 * 7 3 2 34 34 H 1.08003 * 120.02265 * 0.02562 * 11 10 8 35 35 H 1.07998 * 119.80890 * 180.02562 * 12 11 10 36 36 H 1.08007 * 119.77710 * 180.27598 * 13 12 11 37 37 H 1.08005 * 119.97866 * 180.02562 * 14 13 12 38 38 H 0.96996 * 120.00217 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5647 1.4445 0.1259 6 8 4.1294 0.6405 -0.9120 7 7 1.6524 2.0975 -1.2519 8 6 0.4351 2.6644 -1.3670 9 8 -0.3417 2.6319 -0.4320 10 6 0.0450 3.3229 -2.6270 11 6 0.9335 3.3625 -3.7040 12 6 0.5630 3.9801 -4.8790 13 6 -0.6886 4.5644 -4.9996 14 6 -1.5782 4.5345 -3.9463 15 6 -1.2231 3.9159 -2.7519 16 16 -2.3565 3.8761 -1.4034 17 6 -3.7841 4.5529 -2.1837 18 1 -3.7732 4.7600 -3.2435 19 6 -4.9227 4.8200 -1.4360 20 7 -4.9362 4.5674 -0.1450 21 14 -6.4359 5.5382 -2.2630 22 1 -6.1653 5.7287 -3.7107 23 1 -7.5817 4.6092 -2.0912 24 1 -6.7633 6.8479 -1.6446 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.9354 2.4657 0.0367 31 1 3.8498 1.0379 1.0962 32 1 5.0951 0.5964 -0.8940 33 1 2.2720 2.1232 -1.9978 34 1 1.9100 2.9095 -3.6159 35 1 1.2516 4.0091 -5.7105 36 1 -0.9705 5.0419 -5.9265 37 1 -2.5514 4.9916 -4.0486 38 1 -5.7319 4.7537 0.3773 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035202258.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:51 Heat of formation + Delta-G solvation = -88.488272 kcal Electronic energy + Delta-G solvation = -21477.653570 eV Core-core repulsion = 18217.124195 eV Total energy + Delta-G solvation = -3260.529375 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.17069 -39.24173 -38.07583 -35.82239 -34.75578 -33.62628 -31.79827 -31.65630 -29.49982 -27.83028 -24.97657 -24.24942 -23.41052 -21.96672 -21.34078 -19.89325 -18.70010 -18.36452 -17.37558 -17.07349 -17.00440 -16.41047 -15.95071 -15.67060 -15.27964 -15.07019 -14.96461 -14.72687 -14.55563 -14.11988 -13.57568 -13.29920 -13.29276 -13.11195 -13.00060 -12.85652 -12.55239 -12.37438 -12.05103 -11.85910 -11.77123 -11.44519 -11.40410 -11.17101 -10.84733 -10.40278 -9.98071 -9.85379 -9.71171 -8.44730 -8.43707 -6.22498 0.07017 0.54891 1.26994 1.34885 1.45446 1.66802 2.08667 2.19204 2.34428 2.88514 3.06506 3.26505 3.43951 3.81613 4.00969 4.02831 4.12352 4.27364 4.29322 4.54815 4.56616 4.63166 4.63910 4.74423 4.81724 4.88725 5.05058 5.06301 5.12636 5.27921 5.38222 5.46986 5.52403 5.58315 5.68233 5.69913 6.11048 6.17518 6.73461 6.96881 7.00130 7.46791 8.60987 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019220 B = 0.004781 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.461167 B = 5855.349356 C = 7026.053150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C 0.140 3.860 4 H 0.078 0.922 5 C 0.081 3.919 6 O -0.582 6.582 7 N -0.707 5.707 8 C 0.545 3.455 9 O -0.544 6.544 10 C -0.182 4.182 11 C -0.056 4.056 12 C -0.158 4.158 13 C -0.071 4.071 14 C -0.176 4.176 15 C -0.073 4.073 16 S 0.071 5.929 17 C -0.603 4.603 18 H 0.093 0.907 19 C 0.025 3.975 20 N -0.905 5.905 21 Si 0.992 3.008 22 H -0.258 1.258 23 H -0.271 1.271 24 H -0.269 1.269 25 H 0.029 0.971 26 H 0.051 0.949 27 H 0.037 0.963 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.400 0.600 33 H 0.411 0.589 34 H 0.157 0.843 35 H 0.164 0.836 36 H 0.149 0.851 37 H 0.118 0.882 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.780 -5.397 -5.457 21.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.154 4.154 3 C 0.035 3.965 4 H 0.096 0.904 5 C 0.003 3.997 6 O -0.391 6.391 7 N -0.361 5.361 8 C 0.334 3.666 9 O -0.424 6.424 10 C -0.196 4.196 11 C -0.076 4.076 12 C -0.181 4.181 13 C -0.092 4.092 14 C -0.202 4.202 15 C -0.192 4.192 16 S 0.330 5.670 17 C -0.750 4.750 18 H 0.110 0.890 19 C -0.181 4.181 20 N -0.540 5.540 21 Si 0.813 3.187 22 H -0.182 1.182 23 H -0.196 1.196 24 H -0.194 1.194 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.250 0.750 33 H 0.248 0.752 34 H 0.174 0.826 35 H 0.182 0.818 36 H 0.166 0.834 37 H 0.136 0.864 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 18.402 -5.868 -3.368 19.607 hybrid contribution -0.846 1.021 -1.375 1.910 sum 17.556 -4.846 -4.743 18.820 Atomic orbital electron populations 1.21768 0.97282 1.00031 1.01074 1.21756 0.94249 0.96139 1.03213 1.21241 0.94707 0.93467 0.87086 0.90385 1.22331 0.90180 0.95349 0.91880 1.86447 1.27437 1.72146 1.53051 1.45670 1.15521 1.57586 1.17364 1.18393 0.82291 0.78477 0.87433 1.90790 1.51149 1.59648 1.40776 1.19579 0.95414 1.08016 0.96557 1.21434 0.98225 0.96362 0.91550 1.21306 0.97040 1.01115 0.98674 1.21522 0.93515 0.96536 0.97641 1.21449 1.01526 1.03435 0.93758 1.23011 0.97923 0.98175 1.00050 1.84872 1.01862 1.69617 1.10647 1.24300 1.01689 1.50007 0.98966 0.88977 1.26120 1.02161 0.94543 0.95240 1.70132 1.30728 1.45599 1.07541 0.85009 0.76676 0.78080 0.78886 1.18162 1.19618 1.19432 0.95164 0.92979 0.94334 0.91025 0.89610 0.91919 0.90066 0.74950 0.75174 0.82598 0.81808 0.83379 0.86441 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.85 8.51 71.98 0.61 -4.24 16 2 C -0.12 -2.88 5.33 30.60 0.16 -2.71 16 3 C 0.14 3.40 2.66 44.99 0.12 3.52 16 4 H 0.08 2.27 7.58 -2.39 -0.02 2.25 16 5 C 0.08 1.17 6.79 71.98 0.49 1.66 16 6 O -0.58 -7.54 12.61 -148.98 -1.88 -9.42 16 7 N -0.71 -19.71 4.96 -445.80 -2.21 -21.92 16 8 C 0.55 21.34 6.32 86.66 0.55 21.89 16 9 O -0.54 -26.21 10.90 -4.06 -0.04 -26.25 16 10 C -0.18 -7.20 5.89 -19.95 -0.12 -7.32 16 11 C -0.06 -1.58 9.53 22.52 0.21 -1.37 16 12 C -0.16 -4.08 10.02 22.27 0.22 -3.85 16 13 C -0.07 -2.22 10.02 22.29 0.22 -2.00 16 14 C -0.18 -7.52 9.22 22.40 0.21 -7.31 16 15 C -0.07 -3.51 6.15 23.04 0.14 -3.37 16 16 S 0.07 4.15 18.56 -56.49 -1.05 3.10 16 17 C -0.60 -35.70 9.00 67.95 0.61 -35.09 16 18 H 0.09 5.18 4.98 -2.91 -0.01 5.16 16 19 C 0.02 1.44 5.49 84.87 0.47 1.91 16 20 N -0.90 -55.92 13.22 21.64 0.29 -55.63 16 21 Si 0.99 44.53 29.55 68.60 2.03 46.56 16 22 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 25 H 0.03 1.20 5.64 -2.39 -0.01 1.19 16 26 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.04 1.44 7.84 -2.39 -0.02 1.42 16 28 H 0.07 1.76 7.73 -2.39 -0.02 1.74 16 29 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.40 1.35 9.12 -74.06 -0.68 0.68 16 33 H 0.41 9.02 6.41 -92.71 -0.59 8.42 16 34 H 0.16 3.02 6.40 -2.91 -0.02 3.00 16 35 H 0.16 2.69 8.06 -2.91 -0.02 2.67 16 36 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 37 H 0.12 5.42 5.04 -2.91 -0.01 5.41 16 38 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -79.68 323.80 0.87 -78.81 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: -0.16 Total: 23.04 kcal Atomic # 6 Polarization: -42.19 SS G_CDS: 3.90 Total: -38.29 kcal Atomic # 7 Polarization: -75.62 SS G_CDS: -1.93 Total: -77.55 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -1.92 Total: -35.67 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -1.05 Total: 3.10 kcal Total: -79.68 0.87 -78.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035202258.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.682 kcal (2) G-P(sol) polarization free energy of solvation -79.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds