Wall clock time and date at job start Tue Mar 31 2020 07:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47280 * 2 1 4 4 H 1.09001 * 109.46997 * 305.00785 * 3 2 1 5 5 C 1.52994 * 109.47218 * 185.00132 * 3 2 1 6 6 O 1.42900 * 109.47293 * 304.99990 * 5 3 2 7 7 N 1.46501 * 109.46822 * 65.00108 * 3 2 1 8 8 C 1.34780 * 120.00293 * 205.00400 * 7 3 2 9 9 O 1.21605 * 119.99621 * 359.97438 * 8 7 3 10 10 C 1.47423 * 119.99995 * 179.72523 * 8 7 3 11 11 C 1.39672 * 120.21815 * 0.27339 * 10 8 7 12 12 C 1.37809 * 119.94183 * 180.02562 * 11 10 8 13 13 C 1.38655 * 120.37762 * 0.02562 * 12 11 10 14 14 C 1.37909 * 120.44198 * 0.02562 * 13 12 11 15 15 C 1.39113 * 120.04695 * 359.67326 * 14 13 12 16 16 S 1.76200 * 120.18927 * 180.30346 * 15 14 13 17 17 C 1.76198 * 100.00008 * 6.85364 * 16 15 14 18 18 H 1.07996 * 120.00208 * 5.65447 * 17 16 15 19 19 C 1.38816 * 119.99989 * 185.65415 * 17 16 15 20 20 N 1.31556 * 119.99749 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99885 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47084 * 90.00618 * 21 19 17 23 23 H 1.48501 * 109.47037 * 210.00013 * 21 19 17 24 24 H 1.48499 * 109.47449 * 330.00274 * 21 19 17 25 25 H 1.09000 * 109.47021 * 299.99216 * 1 2 3 26 26 H 1.08996 * 109.47048 * 59.99690 * 1 2 3 27 27 H 1.09002 * 109.47006 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46860 * 240.00040 * 2 1 3 29 29 H 1.09001 * 109.47508 * 120.00317 * 2 1 3 30 30 H 1.09001 * 109.47292 * 65.00301 * 5 3 2 31 31 H 1.09005 * 109.47127 * 185.00061 * 5 3 2 32 32 H 0.96700 * 114.00254 * 180.02562 * 6 5 3 33 33 H 0.97002 * 119.99859 * 24.99926 * 7 3 2 34 34 H 1.08002 * 120.03095 * 0.02767 * 11 10 8 35 35 H 1.08002 * 119.81315 * 180.02562 * 12 11 10 36 36 H 1.08006 * 119.77984 * 179.97438 * 13 12 11 37 37 H 1.08001 * 119.97854 * 179.97438 * 14 13 12 38 38 H 0.96995 * 119.99918 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5648 1.4443 -0.1257 6 8 4.1294 0.6404 0.9121 7 7 1.6525 2.0974 1.2518 8 6 1.5256 3.4384 1.2997 9 8 1.7333 4.1046 0.3039 10 6 1.1297 4.0968 2.5579 11 6 0.8906 3.3360 3.7045 12 6 0.5202 3.9574 4.8775 13 6 0.3825 5.3362 4.9274 14 6 0.6137 6.1026 3.8044 15 6 0.9944 5.4946 2.6125 16 16 1.2985 6.4709 1.1775 17 6 1.1778 8.0847 1.8742 18 1 1.0567 8.2049 2.9406 19 6 1.2383 9.2018 1.0524 20 7 1.3852 9.0555 -0.2467 21 14 1.1095 10.9127 1.7910 22 1 2.4665 11.4043 2.1407 23 1 0.4891 11.8326 0.8039 24 1 0.2707 10.8616 3.0153 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8499 1.0377 -1.0961 31 1 3.9355 2.4655 -0.0366 32 1 5.0952 0.5962 0.8941 33 1 1.4872 1.5659 2.0463 34 1 0.9958 2.2616 3.6720 35 1 0.3363 3.3671 5.7630 36 1 0.0914 5.8131 5.8517 37 1 0.5038 7.1759 3.8516 38 1 1.4271 9.8360 -0.8210 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035202259.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:54 Heat of formation + Delta-G solvation = -67.690276 kcal Electronic energy + Delta-G solvation = -21308.199913 eV Core-core repulsion = 18048.572407 eV Total energy + Delta-G solvation = -3259.627506 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.68989 -37.88748 -36.84763 -35.01490 -32.73979 -32.27245 -30.40635 -30.24259 -28.35481 -25.80951 -23.88752 -23.08734 -21.94673 -20.74284 -20.01899 -18.15749 -17.44981 -17.10521 -15.93806 -15.74845 -15.16286 -14.99142 -14.56888 -14.23006 -14.11372 -13.79796 -13.65536 -13.50487 -12.98070 -12.81923 -12.56974 -12.28484 -11.93714 -11.56818 -11.37907 -11.19877 -11.18679 -11.05209 -10.91238 -10.83039 -10.30947 -10.01350 -9.77821 -9.59999 -9.46986 -8.73788 -8.68614 -8.30212 -8.03665 -6.51398 -6.44961 -4.15141 1.56566 2.04850 3.11364 3.13596 3.20180 3.43402 3.54607 3.56703 4.07842 4.30949 4.52809 4.71426 4.95907 5.02346 5.10396 5.15456 5.34651 5.36479 5.42409 5.52454 5.62550 5.65808 5.73558 5.89094 5.90571 5.96480 6.12918 6.17508 6.27037 6.41774 6.62626 6.84173 6.90115 7.06343 7.15976 7.46410 7.58542 7.61671 7.99368 8.17567 8.84151 9.01365 10.58333 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.018322 B = 0.004573 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.817758 B = 6121.618101 C = 7013.823224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C 0.151 3.849 4 H 0.100 0.900 5 C 0.061 3.939 6 O -0.570 6.570 7 N -0.724 5.724 8 C 0.553 3.447 9 O -0.514 6.514 10 C -0.177 4.177 11 C -0.060 4.060 12 C -0.187 4.187 13 C -0.077 4.077 14 C -0.154 4.154 15 C -0.056 4.056 16 S 0.183 5.817 17 C -0.596 4.596 18 H 0.090 0.910 19 C 0.083 3.917 20 N -0.859 5.859 21 Si 0.919 3.081 22 H -0.273 1.273 23 H -0.280 1.280 24 H -0.268 1.268 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.375 0.625 33 H 0.396 0.604 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.139 0.861 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.078 -15.844 3.491 16.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C 0.046 3.954 4 H 0.117 0.883 5 C -0.018 4.018 6 O -0.375 6.375 7 N -0.378 5.378 8 C 0.342 3.658 9 O -0.392 6.392 10 C -0.192 4.192 11 C -0.080 4.080 12 C -0.212 4.212 13 C -0.099 4.099 14 C -0.179 4.179 15 C -0.176 4.176 16 S 0.447 5.553 17 C -0.742 4.742 18 H 0.108 0.892 19 C -0.127 4.127 20 N -0.492 5.492 21 Si 0.744 3.256 22 H -0.199 1.199 23 H -0.205 1.205 24 H -0.192 1.192 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.221 0.779 33 H 0.231 0.769 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.156 0.844 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.895 -15.352 1.244 15.428 hybrid contribution 0.194 1.244 2.054 2.410 sum 1.088 -14.108 3.298 14.529 Atomic orbital electron populations 1.21796 0.95482 1.01340 1.02507 1.21684 0.96051 0.95336 1.03133 1.20996 0.92029 0.93560 0.88842 0.88252 1.22706 0.94626 0.94818 0.89635 1.86438 1.25004 1.72232 1.53805 1.45805 1.72321 1.06799 1.12858 1.18330 0.77318 0.81562 0.88572 1.90768 1.49848 1.62822 1.35732 1.19124 1.13633 0.92579 0.93829 1.20909 0.96798 0.97885 0.92404 1.20637 1.08248 0.94685 0.97586 1.21083 0.97425 0.93897 0.97509 1.21433 1.03276 1.01036 0.92186 1.23090 0.96822 0.96097 1.01613 1.84735 1.73007 0.94787 1.02777 1.24061 1.58404 0.94184 0.97562 0.89190 1.25094 0.93142 0.99985 0.94521 1.69976 1.44144 1.31659 1.03376 0.86154 0.78815 0.81464 0.79148 1.19892 1.20489 1.19237 0.92357 0.92598 0.92823 0.90983 0.90767 0.93262 0.92604 0.77874 0.76866 0.87148 0.87099 0.87054 0.84404 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.80 37.16 0.36 -1.15 16 2 C -0.12 -1.25 5.19 -26.73 -0.14 -1.39 16 3 C 0.15 1.95 2.37 -67.93 -0.16 1.79 16 4 H 0.10 1.44 7.58 -51.93 -0.39 1.04 16 5 C 0.06 0.74 6.85 37.15 0.25 1.00 16 6 O -0.57 -6.32 12.83 -35.23 -0.45 -6.77 16 7 N -0.72 -10.66 4.43 -54.88 -0.24 -10.91 16 8 C 0.55 10.77 7.71 -12.52 -0.10 10.68 16 9 O -0.51 -11.89 13.43 5.27 0.07 -11.82 16 10 C -0.18 -3.54 5.89 -104.76 -0.62 -4.16 16 11 C -0.06 -0.98 9.53 -39.20 -0.37 -1.35 16 12 C -0.19 -2.95 10.02 -39.58 -0.40 -3.34 16 13 C -0.08 -1.34 10.02 -39.55 -0.40 -1.73 16 14 C -0.15 -3.26 9.22 -39.38 -0.36 -3.63 16 15 C -0.06 -1.30 6.14 -38.39 -0.24 -1.54 16 16 S 0.18 4.92 18.56 -107.50 -2.00 2.92 16 17 C -0.60 -16.50 9.00 30.95 0.28 -16.22 16 18 H 0.09 2.37 4.98 -52.49 -0.26 2.11 16 19 C 0.08 2.29 5.49 -17.46 -0.10 2.20 16 20 N -0.86 -24.81 13.22 55.49 0.73 -24.07 16 21 Si 0.92 20.74 29.55 -169.99 -5.02 15.72 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 25 H 0.06 0.62 7.75 -51.93 -0.40 0.21 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.75 7.73 -51.93 -0.40 0.35 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.38 2.67 9.12 45.56 0.42 3.09 16 33 H 0.40 5.03 6.63 -40.82 -0.27 4.76 16 34 H 0.11 1.41 6.40 -52.49 -0.34 1.07 16 35 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 37 H 0.14 3.04 5.04 -52.49 -0.26 2.77 16 38 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 330.95 15.07 4.99 4.99 Total: -1.00 -32.40 330.95 -7.91 -40.31 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -4.01 Total: 8.47 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -1.98 Total: -18.84 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.49 Total: -34.98 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.38 Total: -18.59 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 4.92 SS G_CDS: -2.00 Total: 2.92 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.40 -7.91 -40.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035202259.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.380 kcal (2) G-P(sol) polarization free energy of solvation -32.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds