Wall clock time and date at job start Tue Mar 31 2020 07:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47280 * 2 1 4 4 H 1.09001 * 109.46997 * 305.00785 * 3 2 1 5 5 C 1.52994 * 109.47218 * 185.00132 * 3 2 1 6 6 O 1.42900 * 109.47293 * 304.99990 * 5 3 2 7 7 N 1.46501 * 109.46822 * 65.00108 * 3 2 1 8 8 C 1.34780 * 120.00293 * 205.00400 * 7 3 2 9 9 O 1.21605 * 119.99621 * 359.97438 * 8 7 3 10 10 C 1.47423 * 119.99995 * 179.72523 * 8 7 3 11 11 C 1.39672 * 120.21815 * 0.27339 * 10 8 7 12 12 C 1.37809 * 119.94183 * 180.02562 * 11 10 8 13 13 C 1.38655 * 120.37762 * 0.02562 * 12 11 10 14 14 C 1.37909 * 120.44198 * 0.02562 * 13 12 11 15 15 C 1.39113 * 120.04695 * 359.67326 * 14 13 12 16 16 S 1.76200 * 120.18927 * 180.30346 * 15 14 13 17 17 C 1.76198 * 100.00008 * 6.85364 * 16 15 14 18 18 H 1.07996 * 120.00208 * 5.65447 * 17 16 15 19 19 C 1.38816 * 119.99989 * 185.65415 * 17 16 15 20 20 N 1.31556 * 119.99749 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99885 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47084 * 90.00618 * 21 19 17 23 23 H 1.48501 * 109.47037 * 210.00013 * 21 19 17 24 24 H 1.48499 * 109.47449 * 330.00274 * 21 19 17 25 25 H 1.09000 * 109.47021 * 299.99216 * 1 2 3 26 26 H 1.08996 * 109.47048 * 59.99690 * 1 2 3 27 27 H 1.09002 * 109.47006 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46860 * 240.00040 * 2 1 3 29 29 H 1.09001 * 109.47508 * 120.00317 * 2 1 3 30 30 H 1.09001 * 109.47292 * 65.00301 * 5 3 2 31 31 H 1.09005 * 109.47127 * 185.00061 * 5 3 2 32 32 H 0.96700 * 114.00254 * 180.02562 * 6 5 3 33 33 H 0.97002 * 119.99859 * 24.99926 * 7 3 2 34 34 H 1.08002 * 120.03095 * 0.02767 * 11 10 8 35 35 H 1.08002 * 119.81315 * 180.02562 * 12 11 10 36 36 H 1.08006 * 119.77984 * 179.97438 * 13 12 11 37 37 H 1.08001 * 119.97854 * 179.97438 * 14 13 12 38 38 H 0.96995 * 119.99918 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5648 1.4443 -0.1257 6 8 4.1294 0.6404 0.9121 7 7 1.6525 2.0974 1.2518 8 6 1.5256 3.4384 1.2997 9 8 1.7333 4.1046 0.3039 10 6 1.1297 4.0968 2.5579 11 6 0.8906 3.3360 3.7045 12 6 0.5202 3.9574 4.8775 13 6 0.3825 5.3362 4.9274 14 6 0.6137 6.1026 3.8044 15 6 0.9944 5.4946 2.6125 16 16 1.2985 6.4709 1.1775 17 6 1.1778 8.0847 1.8742 18 1 1.0567 8.2049 2.9406 19 6 1.2383 9.2018 1.0524 20 7 1.3852 9.0555 -0.2467 21 14 1.1095 10.9127 1.7910 22 1 2.4665 11.4043 2.1407 23 1 0.4891 11.8326 0.8039 24 1 0.2707 10.8616 3.0153 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8499 1.0377 -1.0961 31 1 3.9355 2.4655 -0.0366 32 1 5.0952 0.5962 0.8941 33 1 1.4872 1.5659 2.0463 34 1 0.9958 2.2616 3.6720 35 1 0.3363 3.3671 5.7630 36 1 0.0914 5.8131 5.8517 37 1 0.5038 7.1759 3.8516 38 1 1.4271 9.8360 -0.8210 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035202259.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:53 Heat of formation + Delta-G solvation = -91.708227 kcal Electronic energy + Delta-G solvation = -21309.241410 eV Core-core repulsion = 18048.572407 eV Total energy + Delta-G solvation = -3260.669003 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.12676 -39.23928 -38.10336 -36.08654 -34.76201 -33.52816 -31.79546 -31.73661 -29.41027 -27.83644 -25.15359 -24.20621 -23.42984 -21.96836 -21.39038 -19.91146 -18.74700 -18.38208 -17.37167 -17.08770 -17.02653 -16.24402 -15.96795 -15.63742 -15.31801 -15.12363 -15.06193 -14.73418 -14.61660 -14.22293 -13.67470 -13.38871 -13.31118 -13.18077 -12.98707 -12.87791 -12.54948 -12.28507 -12.05297 -11.94015 -11.75232 -11.47271 -11.40125 -11.25000 -10.89588 -10.41311 -10.07393 -9.89817 -9.74007 -8.45956 -8.44779 -6.23706 0.04844 0.54120 1.26750 1.36300 1.45021 1.65207 2.04376 2.17998 2.31015 2.87904 3.04847 3.25562 3.42681 3.75673 3.98577 4.02365 4.08183 4.26863 4.28111 4.46866 4.54761 4.61731 4.62705 4.76378 4.80932 4.86838 4.98590 5.11681 5.12792 5.24246 5.37046 5.45201 5.46475 5.56853 5.64969 5.67652 6.10291 6.16727 6.68481 6.86918 6.96194 7.40160 8.60616 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.018322 B = 0.004573 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.817758 B = 6121.618101 C = 7013.823224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C 0.142 3.858 4 H 0.077 0.923 5 C 0.069 3.931 6 O -0.574 6.574 7 N -0.701 5.701 8 C 0.546 3.454 9 O -0.558 6.558 10 C -0.182 4.182 11 C -0.054 4.054 12 C -0.158 4.158 13 C -0.070 4.070 14 C -0.176 4.176 15 C -0.073 4.073 16 S 0.066 5.934 17 C -0.603 4.603 18 H 0.093 0.907 19 C 0.025 3.975 20 N -0.905 5.905 21 Si 0.993 3.007 22 H -0.266 1.266 23 H -0.273 1.273 24 H -0.258 1.258 25 H 0.049 0.951 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.020 0.980 32 H 0.394 0.606 33 H 0.410 0.590 34 H 0.157 0.843 35 H 0.165 0.835 36 H 0.150 0.850 37 H 0.119 0.881 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.650 -18.902 6.925 20.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C 0.038 3.962 4 H 0.095 0.905 5 C -0.010 4.010 6 O -0.381 6.381 7 N -0.354 5.354 8 C 0.335 3.665 9 O -0.438 6.438 10 C -0.195 4.195 11 C -0.074 4.074 12 C -0.181 4.181 13 C -0.091 4.091 14 C -0.201 4.201 15 C -0.191 4.191 16 S 0.325 5.675 17 C -0.749 4.749 18 H 0.111 0.889 19 C -0.181 4.181 20 N -0.540 5.540 21 Si 0.814 3.186 22 H -0.191 1.191 23 H -0.198 1.198 24 H -0.181 1.181 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.039 0.961 32 H 0.243 0.757 33 H 0.247 0.753 34 H 0.174 0.826 35 H 0.183 0.817 36 H 0.167 0.833 37 H 0.137 0.863 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.469 -18.529 4.767 19.138 hybrid contribution 0.315 1.791 1.223 2.191 sum 0.784 -16.738 5.989 17.795 Atomic orbital electron populations 1.21803 0.95325 1.02413 1.01588 1.21624 0.96031 0.92819 1.04416 1.21202 0.92833 0.95061 0.87124 0.90512 1.22504 0.93894 0.93375 0.91276 1.86373 1.26877 1.71505 1.53385 1.45642 1.70470 1.05156 1.14168 1.18491 0.77069 0.82931 0.87976 1.90768 1.51731 1.64147 1.37173 1.19527 1.12589 0.91810 0.95614 1.21423 0.95064 0.99966 0.90967 1.21317 1.03710 0.94194 0.98836 1.21535 0.95476 0.94790 0.97278 1.21453 1.04727 1.00772 0.93139 1.23001 0.98924 0.96933 1.00241 1.84895 1.78529 0.96836 1.07284 1.24255 1.58481 0.94480 0.97719 0.88884 1.26142 0.92776 1.04309 0.94864 1.70129 1.46293 1.32694 1.04929 0.85039 0.79109 0.75912 0.78523 1.19139 1.19753 1.18147 0.93166 0.93707 0.90719 0.89182 0.89853 0.90734 0.96148 0.75717 0.75263 0.82580 0.81722 0.83266 0.86348 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.80 71.98 0.71 -1.97 16 2 C -0.11 -1.93 5.19 30.60 0.16 -1.77 16 3 C 0.14 3.58 2.37 44.99 0.11 3.68 16 4 H 0.08 2.31 7.58 -2.39 -0.02 2.29 16 5 C 0.07 1.62 6.85 71.98 0.49 2.11 16 6 O -0.57 -11.32 12.83 -148.98 -1.91 -13.23 16 7 N -0.70 -19.82 4.43 -445.80 -1.97 -21.79 16 8 C 0.55 21.74 7.71 86.66 0.67 22.41 16 9 O -0.56 -27.69 13.43 -4.05 -0.05 -27.75 16 10 C -0.18 -7.22 5.89 -19.95 -0.12 -7.34 16 11 C -0.05 -1.54 9.53 22.51 0.21 -1.32 16 12 C -0.16 -4.02 10.02 22.27 0.22 -3.80 16 13 C -0.07 -2.16 10.02 22.29 0.22 -1.93 16 14 C -0.18 -7.45 9.22 22.40 0.21 -7.24 16 15 C -0.07 -3.49 6.14 23.04 0.14 -3.35 16 16 S 0.07 3.85 18.56 -56.49 -1.05 2.80 16 17 C -0.60 -35.61 9.00 67.96 0.61 -35.00 16 18 H 0.09 5.19 4.98 -2.91 -0.01 5.18 16 19 C 0.02 1.43 5.49 84.87 0.47 1.89 16 20 N -0.91 -55.88 13.22 21.65 0.29 -55.59 16 21 Si 0.99 44.28 29.55 68.60 2.03 46.31 16 22 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 24 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 25 H 0.05 0.94 7.75 -2.39 -0.02 0.92 16 26 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.08 1.35 7.73 -2.39 -0.02 1.34 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.39 4.66 9.12 -74.06 -0.68 3.99 16 33 H 0.41 9.06 6.63 -92.71 -0.61 8.44 16 34 H 0.16 3.00 6.40 -2.91 -0.02 2.98 16 35 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 36 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 37 H 0.12 5.42 5.04 -2.91 -0.01 5.41 16 38 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -79.31 330.95 1.24 -78.07 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: -0.19 Total: 24.82 kcal Atomic # 6 Polarization: -37.74 SS G_CDS: 4.10 Total: -33.63 kcal Atomic # 7 Polarization: -75.69 SS G_CDS: -1.69 Total: -77.38 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -1.97 Total: -40.98 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: 3.85 SS G_CDS: -1.05 Total: 2.80 kcal Total: -79.31 1.24 -78.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035202259.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.639 kcal (2) G-P(sol) polarization free energy of solvation -79.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds