Wall clock time and date at job start Tue Mar 31 2020 07:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.52995 * 109.47187 * 119.99498 * 2 1 3 5 5 O 1.42901 * 109.47194 * 55.00542 * 4 2 1 6 6 C 1.35898 * 117.00541 * 179.97438 * 5 4 2 7 7 C 1.38733 * 120.05038 * 359.72594 * 6 5 4 8 8 C 1.38142 * 119.94074 * 179.74131 * 7 6 5 9 9 C 1.38274 * 120.05771 * 0.51047 * 8 7 6 10 10 C 1.38260 * 120.10904 * 359.76402 * 9 8 7 11 11 C 1.38154 * 120.05630 * 359.97438 * 10 9 8 12 12 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 13 13 C 1.34777 * 120.00258 * 85.00009 * 12 2 1 14 14 O 1.21279 * 120.00166 * 359.97438 * 13 12 2 15 15 C 1.50706 * 119.99762 * 179.97438 * 13 12 2 16 16 S 1.81003 * 109.46853 * 179.97438 * 15 13 12 17 17 C 1.76196 * 99.99846 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00030 * 359.97438 * 17 16 15 19 19 C 1.38802 * 119.99637 * 180.02562 * 17 16 15 20 20 N 1.31628 * 120.00513 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99570 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47213 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46950 * 120.00258 * 21 19 17 24 24 H 1.48503 * 109.47177 * 240.00017 * 21 19 17 25 25 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 26 26 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 27 27 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47013 * 175.00169 * 4 2 1 29 29 H 1.08994 * 109.47323 * 295.00629 * 4 2 1 30 30 H 1.08002 * 120.02966 * 0.02562 * 7 6 5 31 31 H 1.07999 * 119.97699 * 180.27764 * 8 7 6 32 32 H 1.07996 * 119.94224 * 179.74678 * 9 8 7 33 33 H 1.07993 * 119.97575 * 179.97438 * 10 9 8 34 34 H 1.07999 * 120.02453 * 179.97438 * 11 10 9 35 35 H 0.96999 * 119.99694 * 264.99399 * 12 2 1 36 36 H 1.09000 * 109.47318 * 299.99141 * 15 13 12 37 37 H 1.09000 * 109.47161 * 59.99772 * 15 13 12 38 38 H 0.96995 * 120.00407 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 8 1.4703 -2.0303 1.3095 6 6 1.8235 -2.8089 2.3658 7 6 2.7048 -2.3249 3.3217 8 6 3.0581 -3.1164 4.3974 9 6 2.5424 -4.3938 4.5163 10 6 1.6683 -4.8805 3.5620 11 6 1.3077 -4.0910 2.4872 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.8582 1.1584 -2.4118 15 6 2.6500 -0.7286 -3.5874 16 16 2.7100 0.4342 -4.9733 17 6 3.3147 -0.6306 -6.2401 18 1 3.5255 -1.6666 -6.0197 19 6 3.5211 -0.1376 -7.5211 20 7 3.2657 1.1255 -7.7894 21 14 4.1629 -1.2664 -8.8641 22 1 4.3696 -2.6282 -8.3092 23 1 3.1761 -1.3284 -9.9721 24 1 5.4526 -0.7401 -9.3787 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1263 -0.7993 1.2056 29 1 1.7516 -0.1582 2.1369 30 1 3.1108 -1.3285 3.2274 31 1 3.7407 -2.7385 5.1442 32 1 2.8231 -5.0124 5.3558 33 1 1.2672 -5.8787 3.6568 34 1 0.6252 -4.4718 1.7418 35 1 2.2491 -1.6317 -1.1525 36 1 3.6494 -1.1203 -3.3979 37 1 1.9778 -1.5509 -3.8325 38 1 3.4096 1.4699 -8.6847 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048805353.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:37 Heat of formation + Delta-G solvation = -56.634074 kcal Electronic energy + Delta-G solvation = -20217.623958 eV Core-core repulsion = 16958.475885 eV Total energy + Delta-G solvation = -3259.148073 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.52265 -39.28188 -37.77219 -35.19807 -32.42265 -31.70166 -31.25591 -30.00845 -28.51573 -27.10214 -25.47753 -23.17160 -22.65179 -21.27794 -20.24894 -18.59279 -17.86847 -16.75496 -16.44929 -16.28841 -15.93289 -15.32259 -14.91462 -14.79719 -14.77408 -14.01896 -13.81398 -13.67171 -13.50173 -13.16652 -12.88228 -12.69342 -12.49880 -11.96466 -11.90433 -11.75940 -11.28739 -11.21540 -11.06547 -11.04620 -11.01118 -10.74394 -9.79784 -9.39906 -9.33625 -9.07318 -8.92935 -8.51812 -8.22586 -6.49183 -6.21208 -3.91473 1.00676 1.12862 2.81770 3.03695 3.10696 3.22179 3.28784 3.33634 3.47156 3.71648 4.21061 4.35812 4.52599 4.61920 4.72083 4.79350 4.91499 5.05499 5.10273 5.13812 5.14116 5.25368 5.35116 5.40068 5.59289 5.66972 5.73049 5.90661 5.95037 5.97531 6.07576 6.16180 6.20666 6.25414 6.43888 6.63382 7.10250 7.60782 7.72399 8.36296 8.60989 9.24373 10.86284 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.024742 B = 0.002654 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.386483 B =10549.011010 C =11289.165658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.149 3.851 3 H 0.106 0.894 4 C 0.051 3.949 5 O -0.309 6.309 6 C 0.133 3.867 7 C -0.210 4.210 8 C -0.081 4.081 9 C -0.162 4.162 10 C -0.082 4.082 11 C -0.153 4.153 12 N -0.733 5.733 13 C 0.534 3.466 14 O -0.518 6.518 15 C -0.153 4.153 16 S -0.061 6.061 17 C -0.534 4.534 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.128 0.872 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.402 0.598 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.405 -9.847 24.969 26.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.044 3.956 3 H 0.124 0.876 4 C -0.024 4.024 5 O -0.222 6.222 6 C 0.087 3.913 7 C -0.229 4.229 8 C -0.099 4.099 9 C -0.181 4.181 10 C -0.100 4.100 11 C -0.171 4.171 12 N -0.388 5.388 13 C 0.320 3.680 14 O -0.392 6.392 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.682 4.682 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.146 0.854 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.236 0.764 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.018 -7.756 24.575 25.946 hybrid contribution 1.038 -2.393 -0.612 2.680 sum -1.980 -10.150 23.963 26.099 Atomic orbital electron populations 1.22119 0.94533 1.02862 1.02563 1.20969 0.95327 0.96795 0.82491 0.87599 1.23218 0.98341 0.81844 0.99028 1.86095 1.67085 1.26257 1.42772 1.19047 0.93965 0.91146 0.87110 1.21305 1.02675 1.01786 0.97137 1.20965 0.98257 0.93908 0.96778 1.21071 1.00163 0.96442 1.00384 1.20988 0.96490 0.99281 0.93203 1.20494 1.03851 0.92230 1.00570 1.46061 1.69227 1.14202 1.09293 1.20326 0.76731 0.87197 0.83745 1.90695 1.48438 1.15763 1.84352 1.23533 1.03691 1.04873 0.98297 1.85374 1.86277 1.12956 0.98810 1.22910 1.50737 0.98230 0.96370 0.90879 1.24998 0.95127 0.95543 0.97971 1.70025 1.45661 1.13214 1.21417 0.86114 0.78511 0.80145 0.80706 1.19609 1.20569 1.20576 0.92015 0.91456 0.91638 0.91112 0.90529 0.85442 0.85876 0.86021 0.85426 0.85123 0.76400 0.89246 0.89173 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.29 37.16 0.35 -1.51 16 2 C 0.15 1.71 2.98 -67.94 -0.20 1.51 16 3 H 0.11 1.31 7.58 -51.93 -0.39 0.91 16 4 C 0.05 0.45 4.48 37.15 0.17 0.62 16 5 O -0.31 -3.12 8.99 -19.42 -0.17 -3.29 16 6 C 0.13 1.29 6.69 -39.22 -0.26 1.03 16 7 C -0.21 -1.79 9.04 -39.43 -0.36 -2.15 16 8 C -0.08 -0.62 10.04 -39.60 -0.40 -1.01 16 9 C -0.16 -1.19 10.04 -39.56 -0.40 -1.59 16 10 C -0.08 -0.62 10.04 -39.60 -0.40 -1.02 16 11 C -0.15 -1.37 9.99 -39.43 -0.39 -1.77 16 12 N -0.73 -9.97 5.06 -53.81 -0.27 -10.24 16 13 C 0.53 9.91 7.81 -10.98 -0.09 9.83 16 14 O -0.52 -11.53 15.53 5.56 0.09 -11.44 16 15 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 17 C -0.53 -15.30 9.50 30.94 0.29 -15.00 16 18 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 19 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 20 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 21 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.75 7.56 -51.93 -0.39 0.35 16 28 H 0.07 0.58 7.65 -51.93 -0.40 0.18 16 29 H 0.08 0.54 7.67 -51.93 -0.40 0.14 16 30 H 0.13 0.90 6.30 -52.49 -0.33 0.57 16 31 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 32 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 33 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 35 H 0.40 4.70 8.38 -40.82 -0.34 4.36 16 36 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 37 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 38 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 341.84 15.07 5.15 5.15 Total: -1.00 -34.23 341.84 -8.45 -42.69 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -5.18 Total: 2.01 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -1.56 Total: -11.97 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.46 Total: -35.76 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.09 Total: -14.73 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.23 -8.45 -42.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048805353.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.946 kcal (2) G-P(sol) polarization free energy of solvation -34.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds