Wall clock time and date at job start Tue Mar 31 2020 07:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.52995 * 109.47187 * 119.99498 * 2 1 3 5 5 O 1.42901 * 109.47194 * 55.00542 * 4 2 1 6 6 C 1.35898 * 117.00541 * 179.97438 * 5 4 2 7 7 C 1.38733 * 120.05038 * 359.72594 * 6 5 4 8 8 C 1.38142 * 119.94074 * 179.74131 * 7 6 5 9 9 C 1.38274 * 120.05771 * 0.51047 * 8 7 6 10 10 C 1.38260 * 120.10904 * 359.76402 * 9 8 7 11 11 C 1.38154 * 120.05630 * 359.97438 * 10 9 8 12 12 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 13 13 C 1.34777 * 120.00258 * 85.00009 * 12 2 1 14 14 O 1.21279 * 120.00166 * 359.97438 * 13 12 2 15 15 C 1.50706 * 119.99762 * 179.97438 * 13 12 2 16 16 S 1.81003 * 109.46853 * 179.97438 * 15 13 12 17 17 C 1.76196 * 99.99846 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00030 * 359.97438 * 17 16 15 19 19 C 1.38802 * 119.99637 * 180.02562 * 17 16 15 20 20 N 1.31628 * 120.00513 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99570 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47213 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46950 * 120.00258 * 21 19 17 24 24 H 1.48503 * 109.47177 * 240.00017 * 21 19 17 25 25 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 26 26 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 27 27 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47013 * 175.00169 * 4 2 1 29 29 H 1.08994 * 109.47323 * 295.00629 * 4 2 1 30 30 H 1.08002 * 120.02966 * 0.02562 * 7 6 5 31 31 H 1.07999 * 119.97699 * 180.27764 * 8 7 6 32 32 H 1.07996 * 119.94224 * 179.74678 * 9 8 7 33 33 H 1.07993 * 119.97575 * 179.97438 * 10 9 8 34 34 H 1.07999 * 120.02453 * 179.97438 * 11 10 9 35 35 H 0.96999 * 119.99694 * 264.99399 * 12 2 1 36 36 H 1.09000 * 109.47318 * 299.99141 * 15 13 12 37 37 H 1.09000 * 109.47161 * 59.99772 * 15 13 12 38 38 H 0.96995 * 120.00407 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 8 1.4703 -2.0303 1.3095 6 6 1.8235 -2.8089 2.3658 7 6 2.7048 -2.3249 3.3217 8 6 3.0581 -3.1164 4.3974 9 6 2.5424 -4.3938 4.5163 10 6 1.6683 -4.8805 3.5620 11 6 1.3077 -4.0910 2.4872 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.8582 1.1584 -2.4118 15 6 2.6500 -0.7286 -3.5874 16 16 2.7100 0.4342 -4.9733 17 6 3.3147 -0.6306 -6.2401 18 1 3.5255 -1.6666 -6.0197 19 6 3.5211 -0.1376 -7.5211 20 7 3.2657 1.1255 -7.7894 21 14 4.1629 -1.2664 -8.8641 22 1 4.3696 -2.6282 -8.3092 23 1 3.1761 -1.3284 -9.9721 24 1 5.4526 -0.7401 -9.3787 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1263 -0.7993 1.2056 29 1 1.7516 -0.1582 2.1369 30 1 3.1108 -1.3285 3.2274 31 1 3.7407 -2.7385 5.1442 32 1 2.8231 -5.0124 5.3558 33 1 1.2672 -5.8787 3.6568 34 1 0.6252 -4.4718 1.7418 35 1 2.2491 -1.6317 -1.1525 36 1 3.6494 -1.1203 -3.3979 37 1 1.9778 -1.5509 -3.8325 38 1 3.4096 1.4699 -8.6847 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048805353.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:37 Heat of formation + Delta-G solvation = -78.905831 kcal Electronic energy + Delta-G solvation = -20218.589734 eV Core-core repulsion = 16958.475885 eV Total energy + Delta-G solvation = -3260.113849 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.28360 -40.53952 -38.51384 -36.33146 -34.59111 -32.89297 -31.89025 -30.70908 -29.94009 -27.88900 -27.66221 -23.89445 -23.28962 -22.31718 -21.43463 -19.87240 -19.25095 -17.90817 -17.71361 -16.93003 -16.88735 -16.69529 -16.37534 -16.34646 -15.73774 -15.39695 -14.82805 -14.58494 -14.42561 -14.38115 -14.28196 -13.75931 -13.47656 -13.24468 -13.16565 -12.91794 -12.76377 -12.57450 -12.44448 -12.14837 -11.93167 -11.71823 -11.68921 -11.16323 -10.94667 -10.28539 -10.18060 -9.91472 -9.13843 -8.67086 -8.35427 -6.13260 0.43050 0.52971 1.26280 1.41053 1.46285 1.57744 1.59370 2.12378 2.25904 2.30332 2.88779 2.98712 3.31132 3.56946 3.90800 3.96339 3.97692 4.05644 4.23554 4.26843 4.30225 4.36107 4.46523 4.50477 4.54168 4.61489 4.72139 4.80310 4.95099 5.12230 5.26803 5.40045 5.41633 5.45928 5.52385 5.64608 5.88564 6.19552 6.45475 6.47073 7.06042 7.21538 8.74031 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.024742 B = 0.002654 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.386483 B =10549.011010 C =11289.165658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.146 3.854 3 H 0.099 0.901 4 C 0.059 3.941 5 O -0.322 6.322 6 C 0.113 3.887 7 C -0.219 4.219 8 C -0.088 4.088 9 C -0.167 4.167 10 C -0.087 4.087 11 C -0.171 4.171 12 N -0.710 5.710 13 C 0.537 3.463 14 O -0.561 6.561 15 C -0.131 4.131 16 S -0.148 6.148 17 C -0.546 4.546 18 H 0.081 0.919 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.258 1.258 23 H -0.274 1.274 24 H -0.273 1.273 25 H 0.084 0.916 26 H 0.037 0.963 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.148 0.852 34 H 0.131 0.869 35 H 0.414 0.586 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.658 -12.061 26.623 29.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.042 3.958 3 H 0.117 0.883 4 C -0.016 4.016 5 O -0.236 6.236 6 C 0.068 3.932 7 C -0.238 4.238 8 C -0.106 4.106 9 C -0.185 4.185 10 C -0.104 4.104 11 C -0.189 4.189 12 N -0.364 5.364 13 C 0.323 3.677 14 O -0.439 6.439 15 C -0.282 4.282 16 S 0.079 5.921 17 C -0.694 4.694 18 H 0.099 0.901 19 C -0.192 4.192 20 N -0.547 5.547 21 Si 0.821 3.179 22 H -0.181 1.181 23 H -0.199 1.199 24 H -0.198 1.198 25 H 0.103 0.897 26 H 0.056 0.944 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.158 0.842 31 H 0.162 0.838 32 H 0.161 0.839 33 H 0.165 0.835 34 H 0.149 0.851 35 H 0.251 0.749 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.275 -10.012 26.280 28.214 hybrid contribution 0.771 -1.762 -0.946 2.144 sum -1.504 -11.774 25.333 27.976 Atomic orbital electron populations 1.22057 0.94358 1.02779 1.02290 1.21140 0.95428 0.96775 0.82489 0.88320 1.23142 0.98664 0.81721 0.98085 1.86051 1.67543 1.26606 1.43377 1.19238 0.95003 0.91477 0.87501 1.21520 1.02516 1.02569 0.97162 1.21303 0.98372 0.94016 0.96921 1.21418 0.99572 0.96683 1.00794 1.21289 0.96360 1.00057 0.92734 1.20698 1.04378 0.92514 1.01330 1.45861 1.67446 1.14606 1.08484 1.20014 0.76624 0.86576 0.84490 1.90685 1.50652 1.17510 1.85046 1.23381 1.05427 1.03224 0.96186 1.85523 1.86669 1.17200 1.02683 1.23231 1.50774 0.98485 0.96893 0.90051 1.26133 0.95097 0.97228 1.00740 1.70182 1.46871 1.15439 1.22243 0.84898 0.77864 0.78179 0.76951 1.18123 1.19905 1.19843 0.89671 0.94350 0.91540 0.90186 0.88192 0.84240 0.83850 0.83918 0.83472 0.85120 0.74942 0.87327 0.87559 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 9.29 71.98 0.67 -2.78 16 2 C 0.15 3.18 2.98 44.99 0.13 3.31 16 3 H 0.10 2.37 7.58 -2.39 -0.02 2.35 16 4 C 0.06 0.92 4.48 71.98 0.32 1.24 16 5 O -0.32 -5.93 8.99 -92.40 -0.83 -6.77 16 6 C 0.11 2.01 6.69 22.50 0.15 2.16 16 7 C -0.22 -3.26 9.04 22.37 0.20 -3.06 16 8 C -0.09 -1.12 10.04 22.26 0.22 -0.90 16 9 C -0.17 -2.02 10.04 22.28 0.22 -1.80 16 10 C -0.09 -1.15 10.04 22.26 0.22 -0.93 16 11 C -0.17 -2.85 9.99 22.37 0.22 -2.63 16 12 N -0.71 -18.54 5.06 -442.54 -2.24 -20.78 16 13 C 0.54 19.90 7.81 87.66 0.68 20.58 16 14 O -0.56 -25.59 15.53 -3.03 -0.05 -25.64 16 15 C -0.13 -5.28 6.16 71.24 0.44 -4.85 16 16 S -0.15 -8.27 20.57 -56.49 -1.16 -9.44 16 17 C -0.55 -31.46 9.50 67.96 0.65 -30.82 16 18 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 19 C 0.01 0.73 5.49 84.86 0.47 1.20 16 20 N -0.91 -56.19 13.22 21.65 0.29 -55.91 16 21 Si 1.00 43.92 29.55 68.60 2.03 45.94 16 22 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 25 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 27 H 0.07 1.45 7.56 -2.39 -0.02 1.43 16 28 H 0.08 1.12 7.65 -2.39 -0.02 1.10 16 29 H 0.10 1.13 7.67 -2.39 -0.02 1.11 16 30 H 0.14 1.61 6.30 -2.91 -0.02 1.59 16 31 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 32 H 0.14 1.06 8.06 -2.91 -0.02 1.04 16 33 H 0.15 1.25 8.06 -2.91 -0.02 1.22 16 34 H 0.13 2.04 8.06 -2.91 -0.02 2.02 16 35 H 0.41 8.93 8.38 -92.71 -0.78 8.16 16 36 H 0.11 3.95 8.14 -2.39 -0.02 3.94 16 37 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 38 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -75.98 341.84 2.93 -73.05 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.29 Total: 18.79 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: 4.61 Total: -19.26 kcal Atomic # 7 Polarization: -74.73 SS G_CDS: -1.95 Total: -76.68 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -0.88 Total: -32.40 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: -8.27 SS G_CDS: -1.16 Total: -9.44 kcal Total: -75.98 2.93 -73.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048805353.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.852 kcal (2) G-P(sol) polarization free energy of solvation -75.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds