Wall clock time and date at job start Tue Mar 31 2020 07:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47184 * 2 1 4 4 S 1.81399 * 109.47126 * 119.99842 * 2 1 3 5 5 C 1.76199 * 103.00334 * 188.86672 * 4 2 1 6 6 C 1.38922 * 120.01970 * 5.80667 * 5 4 2 7 7 C 1.38098 * 119.97404 * 179.76738 * 6 5 4 8 8 C 1.38716 * 120.02142 * 0.48575 * 7 6 5 9 9 O 1.36001 * 119.97327 * 179.74801 * 8 7 6 10 10 C 1.38719 * 120.04887 * 359.76569 * 8 7 6 11 11 C 1.38087 * 120.02465 * 359.97438 * 10 8 7 12 12 C 1.50697 * 109.47373 * 240.00108 * 2 1 3 13 13 O 1.21285 * 119.99752 * 264.99764 * 12 2 1 14 14 N 1.34776 * 119.99928 * 84.99723 * 12 2 1 15 15 C 1.46494 * 120.00137 * 0.02562 * 14 12 2 16 16 C 1.46506 * 119.99701 * 179.72164 * 14 12 2 17 17 C 1.50691 * 109.47451 * 270.27998 * 16 14 12 18 18 H 1.08005 * 120.00124 * 359.97438 * 17 16 14 19 19 C 1.37880 * 120.00008 * 180.02562 * 17 16 14 20 20 N 1.31518 * 119.99597 * 179.97438 * 19 17 16 21 21 Si 1.86791 * 120.00043 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47335 * 90.00011 * 21 19 17 23 23 H 1.48500 * 109.47286 * 210.00445 * 21 19 17 24 24 H 1.48506 * 109.47170 * 330.00181 * 21 19 17 25 25 H 1.08996 * 109.47299 * 295.06951 * 1 2 3 26 26 H 1.09000 * 109.46941 * 55.07394 * 1 2 3 27 27 H 1.08993 * 109.46716 * 175.07185 * 1 2 3 28 28 H 1.08004 * 120.01794 * 359.97438 * 6 5 4 29 29 H 1.07997 * 119.98748 * 180.20784 * 7 6 5 30 30 H 0.96700 * 113.99684 * 270.01816 * 9 8 7 31 31 H 1.07999 * 119.98169 * 179.97438 * 10 8 7 32 32 H 1.07992 * 120.00966 * 179.97438 * 11 10 8 33 33 H 1.09000 * 109.47299 * 269.72293 * 15 14 12 34 34 H 1.09003 * 109.47394 * 29.72783 * 15 14 12 35 35 H 1.09002 * 109.47176 * 149.71989 * 15 14 12 36 36 H 1.09004 * 109.46936 * 30.27871 * 16 14 12 37 37 H 1.09003 * 109.46765 * 150.27713 * 16 14 12 38 38 H 0.96998 * 119.99414 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1347 -0.8551 1.4811 5 6 3.8661 -0.5301 1.4475 6 6 4.3936 0.3290 0.4916 7 6 5.7501 0.5868 0.4691 8 6 6.5872 -0.0196 1.3941 9 8 7.9237 0.2310 1.3678 10 6 6.0623 -0.8817 2.3457 11 6 4.7054 -1.1367 2.3734 12 6 2.0324 -0.7104 -1.2304 13 8 2.3209 -1.8871 -1.1759 14 7 2.1611 -0.0380 -2.3914 15 6 1.8132 1.3835 -2.4570 16 6 2.6553 -0.7271 -3.5861 17 6 4.1574 -0.6204 -3.6423 18 1 4.6907 -0.0917 -2.8661 19 6 4.8509 -1.1968 -4.6854 20 7 6.1618 -1.1032 -4.7347 21 14 3.9285 -2.1106 -6.0283 22 1 3.5717 -1.1643 -7.1157 23 1 4.7901 -3.1899 -6.5742 24 1 2.6904 -2.7041 -5.4626 25 1 -0.3634 0.4354 0.9308 26 1 -0.3633 0.5884 -0.8426 27 1 -0.3632 -1.0238 -0.0883 28 1 3.7426 0.7978 -0.2315 29 1 6.1599 1.2573 -0.2718 30 1 8.4268 -0.3765 0.8085 31 1 6.7151 -1.3535 3.0651 32 1 4.2971 -1.8082 3.1141 33 1 0.7628 1.4883 -2.7287 34 1 1.9848 1.8449 -1.4845 35 1 2.4332 1.8751 -3.2068 36 1 2.3670 -1.7775 -3.5449 37 1 2.2247 -0.2667 -4.4753 38 1 6.6497 -1.5090 -5.4683 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049493762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:57 Heat of formation + Delta-G solvation = -41.540121 kcal Electronic energy + Delta-G solvation = -21880.754561 eV Core-core repulsion = 18622.261010 eV Total energy + Delta-G solvation = -3258.493551 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.50066 -39.18596 -36.41792 -35.04515 -33.36464 -32.30679 -30.83256 -29.64823 -28.51711 -26.15536 -24.76092 -22.70994 -22.46487 -21.87359 -18.77641 -18.27316 -17.29804 -17.01374 -16.90405 -16.05052 -15.45723 -15.27280 -14.86073 -14.64943 -14.14769 -13.76372 -13.49984 -13.30044 -13.02992 -12.70350 -12.47974 -12.38380 -12.17280 -12.02470 -11.99291 -11.84136 -11.64350 -11.22764 -10.99754 -10.59706 -10.35989 -10.17629 -10.07915 -9.61073 -9.29449 -9.11549 -8.83733 -8.64427 -7.82420 -7.10752 -6.14328 -4.13067 1.26452 1.51930 1.58506 2.41749 3.21602 3.22830 3.31172 3.35169 3.66820 3.72564 4.34781 4.44920 4.70839 4.78350 4.93283 5.01261 5.09404 5.19405 5.40886 5.46025 5.52714 5.58235 5.66259 5.72801 5.83588 5.91594 6.05943 6.12122 6.29821 6.42699 6.55670 6.60250 6.86938 6.88742 7.20355 7.54059 7.81122 8.07423 8.39650 8.79794 8.88884 9.45838 10.98810 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.012117 B = 0.006745 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.167568 B = 4150.303834 C = 5774.207577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.113 4.113 3 H 0.110 0.890 4 S -0.067 6.067 5 C -0.090 4.090 6 C -0.101 4.101 7 C -0.111 4.111 8 C 0.098 3.902 9 O -0.502 6.502 10 C -0.130 4.130 11 C -0.088 4.088 12 C 0.506 3.494 13 O -0.512 6.512 14 N -0.593 5.593 15 C 0.078 3.922 16 C 0.216 3.784 17 C -0.528 4.528 18 H 0.074 0.926 19 C 0.074 3.926 20 N -0.895 5.895 21 Si 0.873 3.127 22 H -0.275 1.275 23 H -0.283 1.283 24 H -0.264 1.264 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.123 0.877 29 H 0.133 0.867 30 H 0.392 0.608 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.041 0.959 37 H 0.027 0.973 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.225 5.168 11.298 14.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.245 4.245 3 H 0.128 0.872 4 S 0.178 5.822 5 C -0.202 4.202 6 C -0.125 4.125 7 C -0.131 4.131 8 C 0.051 3.949 9 O -0.313 6.313 10 C -0.150 4.150 11 C -0.112 4.112 12 C 0.288 3.712 13 O -0.387 6.387 14 N -0.325 5.325 15 C -0.066 4.066 16 C 0.096 3.904 17 C -0.566 4.566 18 H 0.093 0.907 19 C -0.129 4.129 20 N -0.534 5.534 21 Si 0.700 3.300 22 H -0.201 1.201 23 H -0.209 1.209 24 H -0.189 1.189 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.141 0.859 29 H 0.151 0.849 30 H 0.248 0.752 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.059 0.941 37 H 0.045 0.955 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.838 4.303 12.346 15.243 hybrid contribution 0.759 -0.018 -2.227 2.353 sum -7.079 4.285 10.118 13.071 Atomic orbital electron populations 1.21486 0.89477 1.04003 1.03424 1.23916 1.01867 1.03235 0.95527 0.87166 1.84974 0.99053 1.70311 1.27912 1.21688 0.97550 1.01070 0.99922 1.21006 0.95744 0.98200 0.97538 1.21335 0.93239 1.00623 0.97943 1.18409 0.83665 0.97019 0.95824 1.84783 1.15871 1.58881 1.71731 1.21244 0.95187 0.98560 1.00008 1.20524 0.92270 0.99619 0.98750 1.19990 0.79320 0.87733 0.84126 1.90738 1.48887 1.15401 1.83689 1.47786 1.63906 1.09917 1.10905 1.21780 1.00084 0.82469 1.02310 1.19712 0.95695 0.93550 0.81488 1.21273 0.89457 1.35986 1.09934 0.90741 1.24834 0.94764 0.95498 0.97792 1.69887 1.06255 1.44916 1.32298 0.86889 0.80532 0.80274 0.82315 1.20092 1.20902 1.18875 0.90591 0.90368 0.91000 0.85914 0.84934 0.75223 0.85194 0.85317 0.93196 0.92345 0.90201 0.94062 0.95534 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 9.16 37.16 0.34 -1.08 16 2 C -0.11 -1.68 1.74 -27.88 -0.05 -1.73 16 3 H 0.11 1.44 4.84 -51.92 -0.25 1.19 16 4 S -0.07 -1.06 20.62 -107.50 -2.22 -3.27 16 5 C -0.09 -1.53 6.04 -39.08 -0.24 -1.76 16 6 C -0.10 -1.81 8.82 -39.38 -0.35 -2.16 16 7 C -0.11 -1.95 9.98 -39.46 -0.39 -2.34 16 8 C 0.10 1.57 6.70 -39.23 -0.26 1.31 16 9 O -0.50 -7.25 13.51 -19.74 -0.27 -7.51 16 10 C -0.13 -1.91 9.98 -39.46 -0.39 -2.30 16 11 C -0.09 -1.35 9.79 -39.39 -0.39 -1.73 16 12 C 0.51 10.03 5.23 -10.99 -0.06 9.97 16 13 O -0.51 -12.55 15.72 5.55 0.09 -12.46 16 14 N -0.59 -11.66 2.86 -182.95 -0.52 -12.19 16 15 C 0.08 1.11 9.93 59.84 0.59 1.70 16 16 C 0.22 5.14 4.23 -5.19 -0.02 5.12 16 17 C -0.53 -14.72 9.94 -34.44 -0.34 -15.06 16 18 H 0.07 2.26 8.06 -52.48 -0.42 1.84 16 19 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 20 N -0.90 -26.98 13.96 55.43 0.77 -26.20 16 21 Si 0.87 21.24 27.47 -169.99 -4.67 16.57 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 24 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.08 0.76 7.72 -51.93 -0.40 0.36 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.12 2.18 5.10 -52.48 -0.27 1.91 16 29 H 0.13 2.27 8.06 -52.49 -0.42 1.84 16 30 H 0.39 4.17 9.06 45.56 0.41 4.58 16 31 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 32 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 33 H 0.05 0.58 8.05 -51.93 -0.42 0.16 16 34 H 0.06 0.69 5.84 -51.93 -0.30 0.39 16 35 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 36 H 0.04 1.07 6.48 -51.93 -0.34 0.74 16 37 H 0.03 0.59 7.50 -51.93 -0.39 0.20 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 331.38 15.07 4.99 4.99 Total: -1.00 -34.79 331.38 -7.55 -42.34 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -4.08 Total: 5.80 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -1.65 Total: -8.07 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.25 Total: -38.39 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.18 Total: -19.98 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Atomic # 16 Polarization: -1.06 SS G_CDS: -2.22 Total: -3.27 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.79 -7.55 -42.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049493762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.802 kcal (2) G-P(sol) polarization free energy of solvation -34.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds