Wall clock time and date at job start Tue Mar 31 2020 07:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47184 * 2 1 4 4 S 1.81399 * 109.47126 * 119.99842 * 2 1 3 5 5 C 1.76199 * 103.00334 * 188.86672 * 4 2 1 6 6 C 1.38922 * 120.01970 * 5.80667 * 5 4 2 7 7 C 1.38098 * 119.97404 * 179.76738 * 6 5 4 8 8 C 1.38716 * 120.02142 * 0.48575 * 7 6 5 9 9 O 1.36001 * 119.97327 * 179.74801 * 8 7 6 10 10 C 1.38719 * 120.04887 * 359.76569 * 8 7 6 11 11 C 1.38087 * 120.02465 * 359.97438 * 10 8 7 12 12 C 1.50697 * 109.47373 * 240.00108 * 2 1 3 13 13 O 1.21285 * 119.99752 * 264.99764 * 12 2 1 14 14 N 1.34776 * 119.99928 * 84.99723 * 12 2 1 15 15 C 1.46494 * 120.00137 * 0.02562 * 14 12 2 16 16 C 1.46506 * 119.99701 * 179.72164 * 14 12 2 17 17 C 1.50691 * 109.47451 * 270.27998 * 16 14 12 18 18 H 1.08005 * 120.00124 * 359.97438 * 17 16 14 19 19 C 1.37880 * 120.00008 * 180.02562 * 17 16 14 20 20 N 1.31518 * 119.99597 * 179.97438 * 19 17 16 21 21 Si 1.86791 * 120.00043 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47335 * 90.00011 * 21 19 17 23 23 H 1.48500 * 109.47286 * 210.00445 * 21 19 17 24 24 H 1.48506 * 109.47170 * 330.00181 * 21 19 17 25 25 H 1.08996 * 109.47299 * 295.06951 * 1 2 3 26 26 H 1.09000 * 109.46941 * 55.07394 * 1 2 3 27 27 H 1.08993 * 109.46716 * 175.07185 * 1 2 3 28 28 H 1.08004 * 120.01794 * 359.97438 * 6 5 4 29 29 H 1.07997 * 119.98748 * 180.20784 * 7 6 5 30 30 H 0.96700 * 113.99684 * 270.01816 * 9 8 7 31 31 H 1.07999 * 119.98169 * 179.97438 * 10 8 7 32 32 H 1.07992 * 120.00966 * 179.97438 * 11 10 8 33 33 H 1.09000 * 109.47299 * 269.72293 * 15 14 12 34 34 H 1.09003 * 109.47394 * 29.72783 * 15 14 12 35 35 H 1.09002 * 109.47176 * 149.71989 * 15 14 12 36 36 H 1.09004 * 109.46936 * 30.27871 * 16 14 12 37 37 H 1.09003 * 109.46765 * 150.27713 * 16 14 12 38 38 H 0.96998 * 119.99414 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1347 -0.8551 1.4811 5 6 3.8661 -0.5301 1.4475 6 6 4.3936 0.3290 0.4916 7 6 5.7501 0.5868 0.4691 8 6 6.5872 -0.0196 1.3941 9 8 7.9237 0.2310 1.3678 10 6 6.0623 -0.8817 2.3457 11 6 4.7054 -1.1367 2.3734 12 6 2.0324 -0.7104 -1.2304 13 8 2.3209 -1.8871 -1.1759 14 7 2.1611 -0.0380 -2.3914 15 6 1.8132 1.3835 -2.4570 16 6 2.6553 -0.7271 -3.5861 17 6 4.1574 -0.6204 -3.6423 18 1 4.6907 -0.0917 -2.8661 19 6 4.8509 -1.1968 -4.6854 20 7 6.1618 -1.1032 -4.7347 21 14 3.9285 -2.1106 -6.0283 22 1 3.5717 -1.1643 -7.1157 23 1 4.7901 -3.1899 -6.5742 24 1 2.6904 -2.7041 -5.4626 25 1 -0.3634 0.4354 0.9308 26 1 -0.3633 0.5884 -0.8426 27 1 -0.3632 -1.0238 -0.0883 28 1 3.7426 0.7978 -0.2315 29 1 6.1599 1.2573 -0.2718 30 1 8.4268 -0.3765 0.8085 31 1 6.7151 -1.3535 3.0651 32 1 4.2971 -1.8082 3.1141 33 1 0.7628 1.4883 -2.7287 34 1 1.9848 1.8449 -1.4845 35 1 2.4332 1.8751 -3.2068 36 1 2.3670 -1.7775 -3.5449 37 1 2.2247 -0.2667 -4.4753 38 1 6.6497 -1.5090 -5.4683 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049493762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:57 Heat of formation + Delta-G solvation = -66.259446 kcal Electronic energy + Delta-G solvation = -21881.826471 eV Core-core repulsion = 18622.261010 eV Total energy + Delta-G solvation = -3259.565461 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.95061 -40.51464 -37.62316 -36.70782 -34.98466 -34.02806 -32.08237 -30.89579 -30.34556 -27.51315 -26.09649 -24.29499 -23.72877 -23.35238 -20.29128 -19.50366 -19.13361 -18.52756 -18.32845 -17.46496 -16.76718 -16.64086 -16.47648 -16.05960 -15.63521 -15.19656 -15.00655 -14.58610 -14.42524 -14.20121 -13.89321 -13.70999 -13.61361 -13.33182 -13.25130 -13.19393 -13.06778 -12.77784 -12.43442 -12.31902 -12.05994 -11.76827 -11.57282 -11.32019 -10.82358 -10.74938 -10.50688 -10.11466 -9.46248 -8.34823 -8.33212 -6.38443 -0.00130 0.24366 0.38266 1.15057 1.29661 1.34538 1.44328 1.74745 2.20633 2.29628 2.46767 2.99747 3.26194 3.42552 3.63345 3.78058 3.82636 3.89550 4.21412 4.33989 4.42238 4.57861 4.61319 4.66535 4.69722 4.77265 4.86372 4.89807 4.93910 5.05452 5.11637 5.15291 5.33075 5.44049 5.53818 5.66259 6.21802 6.55754 6.62686 6.72901 7.18634 7.31989 8.82049 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.012117 B = 0.006745 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.167568 B = 4150.303834 C = 5774.207577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.105 4.105 3 H 0.131 0.869 4 S -0.062 6.062 5 C -0.111 4.111 6 C -0.119 4.119 7 C -0.137 4.137 8 C 0.093 3.907 9 O -0.506 6.506 10 C -0.125 4.125 11 C -0.090 4.090 12 C 0.500 3.500 13 O -0.570 6.570 14 N -0.599 5.599 15 C 0.069 3.931 16 C 0.224 3.776 17 C -0.531 4.531 18 H 0.032 0.968 19 C 0.014 3.986 20 N -0.941 5.941 21 Si 0.942 3.058 22 H -0.251 1.251 23 H -0.284 1.284 24 H -0.257 1.257 25 H 0.105 0.895 26 H 0.101 0.899 27 H 0.059 0.941 28 H 0.116 0.884 29 H 0.122 0.878 30 H 0.408 0.592 31 H 0.162 0.838 32 H 0.154 0.846 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.018 0.982 37 H 0.051 0.949 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.303 5.570 11.747 15.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.236 4.236 3 H 0.148 0.852 4 S 0.183 5.817 5 C -0.223 4.223 6 C -0.143 4.143 7 C -0.157 4.157 8 C 0.046 3.954 9 O -0.319 6.319 10 C -0.145 4.145 11 C -0.113 4.113 12 C 0.286 3.714 13 O -0.449 6.449 14 N -0.330 5.330 15 C -0.073 4.073 16 C 0.101 3.899 17 C -0.569 4.569 18 H 0.050 0.950 19 C -0.185 4.185 20 N -0.581 5.581 21 Si 0.765 3.235 22 H -0.175 1.175 23 H -0.210 1.210 24 H -0.181 1.181 25 H 0.124 0.876 26 H 0.120 0.880 27 H 0.078 0.922 28 H 0.134 0.866 29 H 0.140 0.860 30 H 0.266 0.734 31 H 0.180 0.820 32 H 0.171 0.829 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.036 0.964 37 H 0.069 0.931 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.934 4.760 12.801 16.888 hybrid contribution 1.493 -0.102 -2.300 2.744 sum -8.441 4.658 10.501 14.255 Atomic orbital electron populations 1.21598 0.86334 1.04052 1.06049 1.23976 1.04176 1.03098 0.92395 0.85175 1.84859 0.98036 1.70951 1.27807 1.21972 0.98858 1.01244 1.00246 1.21027 0.95876 0.99221 0.98171 1.21437 0.93810 1.01674 0.98826 1.18541 0.84147 0.96963 0.95767 1.84733 1.15233 1.59729 1.72164 1.21578 0.95483 0.97638 0.99770 1.20923 0.92458 0.99334 0.98635 1.20820 0.78119 0.87299 0.85207 1.90701 1.51426 1.18050 1.84766 1.47855 1.63308 1.11963 1.09871 1.22121 1.02207 0.79216 1.03753 1.19375 0.93015 0.93204 0.84292 1.21487 0.91771 1.35075 1.08593 0.94988 1.25776 0.95597 0.96480 1.00622 1.70042 1.08129 1.46442 1.33532 0.85791 0.79121 0.79128 0.79416 1.17541 1.21003 1.18145 0.87645 0.88042 0.92223 0.86603 0.85979 0.73375 0.82027 0.82852 0.89222 0.89857 0.91090 0.96353 0.93100 0.92420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 9.16 71.98 0.66 -1.72 16 2 C -0.10 -2.93 1.74 29.85 0.05 -2.88 16 3 H 0.13 3.12 4.84 -2.39 -0.01 3.10 16 4 S -0.06 -1.87 20.62 -56.49 -1.16 -3.03 16 5 C -0.11 -3.75 6.04 22.60 0.14 -3.62 16 6 C -0.12 -4.39 8.82 22.40 0.20 -4.19 16 7 C -0.14 -5.03 9.98 22.35 0.22 -4.81 16 8 C 0.09 3.00 6.70 22.50 0.15 3.15 16 9 O -0.51 -14.50 13.51 -93.56 -1.26 -15.76 16 10 C -0.12 -3.52 9.98 22.35 0.22 -3.30 16 11 C -0.09 -2.66 9.79 22.40 0.22 -2.44 16 12 C 0.50 19.70 5.23 87.66 0.46 20.16 16 13 O -0.57 -28.55 15.72 -3.05 -0.05 -28.59 16 14 N -0.60 -23.18 2.86 -851.13 -2.43 -25.61 16 15 C 0.07 1.81 9.93 127.77 1.27 3.08 16 16 C 0.22 10.63 4.23 85.63 0.36 10.99 16 17 C -0.53 -30.49 9.94 25.60 0.25 -30.24 16 18 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 19 C 0.01 0.78 5.47 84.65 0.46 1.25 16 20 N -0.94 -58.51 13.96 21.45 0.30 -58.21 16 21 Si 0.94 43.94 27.47 68.60 1.88 45.82 16 22 H -0.25 -10.70 7.11 99.48 0.71 -9.99 16 23 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 24 H -0.26 -11.63 6.54 99.48 0.65 -10.98 16 25 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.10 1.54 7.72 -2.39 -0.02 1.52 16 27 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.12 4.25 5.10 -2.91 -0.01 4.24 16 29 H 0.12 4.54 8.06 -2.91 -0.02 4.51 16 30 H 0.41 8.63 9.06 -74.06 -0.67 7.96 16 31 H 0.16 3.46 8.06 -2.91 -0.02 3.43 16 32 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 33 H 0.09 1.70 8.05 -2.39 -0.02 1.68 16 34 H 0.08 1.77 5.84 -2.39 -0.01 1.75 16 35 H 0.07 2.01 8.07 -2.39 -0.02 1.99 16 36 H 0.02 0.96 6.48 -2.39 -0.02 0.95 16 37 H 0.05 2.17 7.50 -2.39 -0.02 2.15 16 38 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -79.26 331.38 2.30 -76.95 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 0.36 Total: 23.00 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: 4.67 Total: -14.57 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: -2.13 Total: -83.82 kcal Atomic # 8 Polarization: -43.04 SS G_CDS: -1.31 Total: -44.35 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.82 kcal Atomic # 16 Polarization: -1.87 SS G_CDS: -1.16 Total: -3.03 kcal Total: -79.26 2.30 -76.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049493762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.695 kcal (2) G-P(sol) polarization free energy of solvation -79.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds