Wall clock time and date at job start Tue Mar 31 2020 07:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46907 * 2 1 4 4 C 1.50690 * 109.46923 * 120.00121 * 2 1 3 5 5 H 1.08003 * 120.00264 * 85.98781 * 4 2 1 6 6 C 1.37881 * 120.00379 * 265.98628 * 4 2 1 7 7 N 1.31515 * 120.00274 * 178.24763 * 6 4 2 8 8 Si 1.86796 * 119.99642 * 358.24079 * 6 4 2 9 9 H 1.48499 * 109.47682 * 274.90192 * 8 6 4 10 10 H 1.48504 * 109.47061 * 34.90276 * 8 6 4 11 11 H 1.48505 * 109.47093 * 154.90176 * 8 6 4 12 12 N 1.46501 * 109.46955 * 240.00602 * 2 1 3 13 13 S 1.65593 * 120.00295 * 94.99762 * 12 2 1 14 14 O 1.42102 * 106.40271 * 178.53649 * 13 12 2 15 15 O 1.42102 * 106.40369 * 311.46134 * 13 12 2 16 16 C 1.76204 * 107.21635 * 64.99799 * 13 12 2 17 17 C 1.38253 * 120.03280 * 89.99894 * 16 13 12 18 18 C 1.38100 * 119.93629 * 179.97438 * 17 16 13 19 19 C 1.38497 * 120.21804 * 0.02562 * 18 17 16 20 20 C 1.38212 * 119.84498 * 0.02562 * 19 18 17 21 21 C 1.38097 * 120.03537 * 269.72447 * 16 13 12 22 22 C 1.51374 * 109.75993 * 179.97438 * 20 19 18 23 23 C 1.54344 * 105.16658 * 17.19501 * 22 20 19 24 24 C 1.51370 * 130.39706 * 180.02562 * 19 18 17 25 25 H 1.09002 * 109.47310 * 174.38693 * 1 2 3 26 26 H 1.09002 * 109.47139 * 294.38827 * 1 2 3 27 27 H 1.08998 * 109.47403 * 54.38295 * 1 2 3 28 28 H 0.97003 * 120.00101 * 179.97438 * 7 6 4 29 29 H 0.97006 * 119.99624 * 275.00039 * 12 2 1 30 30 H 1.08001 * 120.03307 * 359.97438 * 17 16 13 31 31 H 1.08003 * 119.89117 * 179.97438 * 18 17 16 32 32 H 1.08005 * 119.89336 * 0.02562 * 21 16 13 33 33 H 1.08996 * 110.30124 * 136.11706 * 22 20 19 34 34 H 1.08994 * 110.30320 * 258.17159 * 22 20 19 35 35 H 1.08999 * 110.82694 * 91.87693 * 23 22 20 36 36 H 1.09001 * 110.82212 * 215.22752 * 23 22 20 37 37 H 1.09004 * 110.30340 * 281.74174 * 24 19 18 38 38 H 1.09005 * 110.30191 * 43.89259 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.1506 -1.7839 1.2237 6 6 2.3409 0.0100 2.3648 7 7 2.7463 -0.6132 3.4496 8 14 2.1833 1.8713 2.3607 9 1 3.4270 2.4724 1.8157 10 1 1.0294 2.2685 1.5145 11 1 1.9680 2.3529 3.7489 12 7 2.0183 -0.6905 -1.1963 13 16 2.4121 0.1773 -2.5505 14 8 2.8776 -0.7633 -3.5086 15 8 1.3246 1.0595 -2.7921 16 6 3.7927 1.1912 -2.1371 17 6 5.0785 0.7165 -2.3178 18 6 6.1591 1.5129 -1.9936 19 6 5.9594 2.7864 -1.4872 20 6 4.6739 3.2606 -1.3056 21 6 3.5915 2.4628 -1.6376 22 6 4.7212 4.6657 -0.7446 23 6 6.1586 5.1596 -1.0133 24 6 6.9586 3.8407 -1.0614 25 1 -0.3634 -1.0227 -0.1005 26 1 -0.3633 0.4243 0.9360 27 1 -0.3634 0.5985 -0.8354 28 1 2.9638 -0.1064 4.2476 29 1 2.1109 -1.6561 -1.1950 30 1 5.2378 -0.2763 -2.7121 31 1 7.1633 1.1412 -2.1347 32 1 2.5867 2.8345 -1.5005 33 1 4.0005 5.3023 -1.2578 34 1 4.5181 4.6525 0.3262 35 1 6.2166 5.6826 -1.9678 36 1 6.5069 5.7984 -0.2016 37 1 7.3592 3.6057 -0.0753 38 1 7.7654 3.9137 -1.7907 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336724.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:13 Heat of formation + Delta-G solvation = -61.482525 kcal Electronic energy + Delta-G solvation = -22316.160842 eV Core-core repulsion = 19056.802524 eV Total energy + Delta-G solvation = -3259.358318 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.04854 -36.79238 -35.80344 -35.52922 -35.34944 -32.26753 -31.50832 -29.20232 -29.04380 -27.43150 -25.29152 -22.99099 -21.53823 -20.94972 -20.76853 -18.91771 -17.72996 -17.04057 -16.21251 -16.05318 -15.70394 -15.55816 -15.01868 -14.43271 -13.93141 -13.60423 -13.29415 -12.99845 -12.84061 -12.77551 -12.58845 -12.29709 -11.94244 -11.80189 -11.74045 -11.59246 -11.53438 -11.32699 -11.13779 -11.10982 -10.90961 -10.79046 -10.60909 -10.42116 -9.89655 -9.32999 -8.95219 -8.79711 -8.63416 -8.50260 -6.27212 -4.28024 0.83665 1.10416 1.43549 3.14131 3.23195 3.25220 3.44254 3.74188 4.22929 4.25107 4.29694 4.42056 4.80236 4.85015 4.97698 5.07200 5.09807 5.26789 5.35580 5.52380 5.58913 5.63829 5.65208 5.76157 5.95915 5.98781 6.01796 6.14408 6.25122 6.28271 6.32575 6.55797 6.60004 6.64954 6.96928 7.09818 7.18753 7.41106 7.88797 8.32824 8.77232 9.33086 10.85037 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.012347 B = 0.008322 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.163028 B = 3363.718403 C = 4678.412372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.243 3.757 3 H 0.037 0.963 4 C -0.517 4.517 5 H 0.083 0.917 6 C 0.079 3.921 7 N -0.887 5.887 8 Si 0.855 3.145 9 H -0.268 1.268 10 H -0.257 1.257 11 H -0.283 1.283 12 N -1.093 6.093 13 S 2.683 3.317 14 O -0.979 6.979 15 O -0.966 6.966 16 C -0.664 4.664 17 C -0.016 4.016 18 C -0.130 4.130 19 C -0.050 4.050 20 C -0.121 4.121 21 C -0.007 4.007 22 C -0.085 4.085 23 C -0.119 4.119 24 C -0.088 4.088 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.040 0.960 28 H 0.267 0.733 29 H 0.413 0.587 30 H 0.141 0.859 31 H 0.128 0.872 32 H 0.135 0.865 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.632 9.055 -8.491 14.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.138 3.862 3 H 0.055 0.945 4 C -0.557 4.557 5 H 0.101 0.899 6 C -0.125 4.125 7 N -0.524 5.524 8 Si 0.681 3.319 9 H -0.193 1.193 10 H -0.181 1.181 11 H -0.208 1.208 12 N -0.854 5.854 13 S 2.773 3.227 14 O -0.969 6.969 15 O -0.956 6.956 16 C -0.750 4.750 17 C -0.035 4.035 18 C -0.148 4.148 19 C -0.051 4.051 20 C -0.122 4.122 21 C -0.026 4.026 22 C -0.122 4.122 23 C -0.156 4.156 24 C -0.125 4.125 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.248 0.752 30 H 0.159 0.841 31 H 0.146 0.854 32 H 0.153 0.847 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.265 9.268 -9.115 14.430 hybrid contribution 0.636 0.762 0.805 1.278 sum 6.901 10.030 -8.310 14.740 Atomic orbital electron populations 1.22388 0.98003 1.01053 1.00347 1.18885 0.91323 0.92167 0.83780 0.94507 1.21085 1.44296 0.96147 0.94205 0.89889 1.24948 0.93961 0.98168 0.95424 1.69869 1.44024 1.36063 1.02456 0.87174 0.79953 0.86654 0.78133 1.19329 1.18091 1.20833 1.55716 1.80689 1.18751 1.30256 1.02117 0.73822 0.73533 0.73267 1.93523 1.82426 1.61491 1.59444 1.93549 1.50679 1.67087 1.84314 1.31015 1.17079 1.10158 1.16732 1.20763 0.90634 0.99061 0.93069 1.20675 0.99197 0.93438 1.01524 1.20862 0.95383 0.94373 0.94445 1.20636 0.93576 0.97113 1.00831 1.20366 0.99184 0.91300 0.91783 1.21095 0.97738 0.92005 1.01407 1.22289 0.94430 0.96587 1.02332 1.21158 0.96863 0.92396 1.02035 0.92907 0.92481 0.94139 0.92276 0.75194 0.84118 0.85449 0.84721 0.90371 0.89921 0.90849 0.90344 0.89581 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 9.46 37.16 0.35 -2.98 16 2 C 0.24 5.48 2.36 -69.08 -0.16 5.32 16 3 H 0.04 0.84 4.60 -51.93 -0.24 0.60 16 4 C -0.52 -13.51 9.11 -34.44 -0.31 -13.83 16 5 H 0.08 2.31 8.06 -52.48 -0.42 1.89 16 6 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 7 N -0.89 -25.62 13.96 55.43 0.77 -24.84 16 8 Si 0.85 20.07 26.68 -169.99 -4.54 15.53 16 9 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.26 -5.72 6.88 56.52 0.39 -5.33 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 N -1.09 -21.56 5.46 -5.88 -0.03 -21.59 16 13 S 2.68 50.71 5.65 -107.50 -0.61 50.10 16 14 O -0.98 -19.23 17.29 -57.17 -0.99 -20.21 16 15 O -0.97 -19.91 16.63 -57.17 -0.95 -20.86 16 16 C -0.66 -12.02 5.81 -39.63 -0.23 -12.25 16 17 C -0.02 -0.26 9.52 -39.63 -0.38 -0.64 16 18 C -0.13 -1.89 10.04 -39.54 -0.40 -2.28 16 19 C -0.05 -0.73 6.14 -104.21 -0.64 -1.37 16 20 C -0.12 -1.93 6.14 -104.20 -0.64 -2.57 16 21 C -0.01 -0.13 8.92 -39.54 -0.35 -0.48 16 22 C -0.09 -1.08 6.77 -26.85 -0.18 -1.26 16 23 C -0.12 -1.17 7.08 -25.33 -0.18 -1.35 16 24 C -0.09 -0.95 6.77 -26.86 -0.18 -1.13 16 25 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.06 1.20 7.87 -51.93 -0.41 0.79 16 27 H 0.04 0.80 7.74 -51.93 -0.40 0.40 16 28 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.41 7.43 8.83 -34.47 -0.30 7.13 16 30 H 0.14 2.04 7.62 -52.49 -0.40 1.64 16 31 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 32 H 0.13 2.33 7.61 -52.48 -0.40 1.93 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 326.03 15.07 4.91 4.91 Total: -1.00 -31.84 326.03 -9.94 -41.77 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -5.11 Total: 7.95 kcal Atomic # 6 Polarization: -29.36 SS G_CDS: -3.40 Total: -32.77 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: 0.74 Total: -46.43 kcal Atomic # 8 Polarization: -39.13 SS G_CDS: -1.94 Total: -41.07 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.54 Total: 15.53 kcal Atomic # 16 Polarization: 50.71 SS G_CDS: -0.61 Total: 50.10 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.84 -9.94 -41.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336724.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.708 kcal (2) G-P(sol) polarization free energy of solvation -31.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds