Wall clock time and date at job start Tue Mar 31 2020 07:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46907 * 2 1 4 4 C 1.50690 * 109.46923 * 120.00121 * 2 1 3 5 5 H 1.08003 * 120.00264 * 85.98781 * 4 2 1 6 6 C 1.37881 * 120.00379 * 265.98628 * 4 2 1 7 7 N 1.31515 * 120.00274 * 178.24763 * 6 4 2 8 8 Si 1.86796 * 119.99642 * 358.24079 * 6 4 2 9 9 H 1.48499 * 109.47682 * 274.90192 * 8 6 4 10 10 H 1.48504 * 109.47061 * 34.90276 * 8 6 4 11 11 H 1.48505 * 109.47093 * 154.90176 * 8 6 4 12 12 N 1.46501 * 109.46955 * 240.00602 * 2 1 3 13 13 S 1.65593 * 120.00295 * 94.99762 * 12 2 1 14 14 O 1.42102 * 106.40271 * 178.53649 * 13 12 2 15 15 O 1.42102 * 106.40369 * 311.46134 * 13 12 2 16 16 C 1.76204 * 107.21635 * 64.99799 * 13 12 2 17 17 C 1.38253 * 120.03280 * 89.99894 * 16 13 12 18 18 C 1.38100 * 119.93629 * 179.97438 * 17 16 13 19 19 C 1.38497 * 120.21804 * 0.02562 * 18 17 16 20 20 C 1.38212 * 119.84498 * 0.02562 * 19 18 17 21 21 C 1.38097 * 120.03537 * 269.72447 * 16 13 12 22 22 C 1.51374 * 109.75993 * 179.97438 * 20 19 18 23 23 C 1.54344 * 105.16658 * 17.19501 * 22 20 19 24 24 C 1.51370 * 130.39706 * 180.02562 * 19 18 17 25 25 H 1.09002 * 109.47310 * 174.38693 * 1 2 3 26 26 H 1.09002 * 109.47139 * 294.38827 * 1 2 3 27 27 H 1.08998 * 109.47403 * 54.38295 * 1 2 3 28 28 H 0.97003 * 120.00101 * 179.97438 * 7 6 4 29 29 H 0.97006 * 119.99624 * 275.00039 * 12 2 1 30 30 H 1.08001 * 120.03307 * 359.97438 * 17 16 13 31 31 H 1.08003 * 119.89117 * 179.97438 * 18 17 16 32 32 H 1.08005 * 119.89336 * 0.02562 * 21 16 13 33 33 H 1.08996 * 110.30124 * 136.11706 * 22 20 19 34 34 H 1.08994 * 110.30320 * 258.17159 * 22 20 19 35 35 H 1.08999 * 110.82694 * 91.87693 * 23 22 20 36 36 H 1.09001 * 110.82212 * 215.22752 * 23 22 20 37 37 H 1.09004 * 110.30340 * 281.74174 * 24 19 18 38 38 H 1.09005 * 110.30191 * 43.89259 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.1506 -1.7839 1.2237 6 6 2.3409 0.0100 2.3648 7 7 2.7463 -0.6132 3.4496 8 14 2.1833 1.8713 2.3607 9 1 3.4270 2.4724 1.8157 10 1 1.0294 2.2685 1.5145 11 1 1.9680 2.3529 3.7489 12 7 2.0183 -0.6905 -1.1963 13 16 2.4121 0.1773 -2.5505 14 8 2.8776 -0.7633 -3.5086 15 8 1.3246 1.0595 -2.7921 16 6 3.7927 1.1912 -2.1371 17 6 5.0785 0.7165 -2.3178 18 6 6.1591 1.5129 -1.9936 19 6 5.9594 2.7864 -1.4872 20 6 4.6739 3.2606 -1.3056 21 6 3.5915 2.4628 -1.6376 22 6 4.7212 4.6657 -0.7446 23 6 6.1586 5.1596 -1.0133 24 6 6.9586 3.8407 -1.0614 25 1 -0.3634 -1.0227 -0.1005 26 1 -0.3633 0.4243 0.9360 27 1 -0.3634 0.5985 -0.8354 28 1 2.9638 -0.1064 4.2476 29 1 2.1109 -1.6561 -1.1950 30 1 5.2378 -0.2763 -2.7121 31 1 7.1633 1.1412 -2.1347 32 1 2.5867 2.8345 -1.5005 33 1 4.0005 5.3023 -1.2578 34 1 4.5181 4.6525 0.3262 35 1 6.2166 5.6826 -1.9678 36 1 6.5069 5.7984 -0.2016 37 1 7.3592 3.6057 -0.0753 38 1 7.7654 3.9137 -1.7907 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050336724.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:12 Heat of formation + Delta-G solvation = -83.066573 kcal Electronic energy + Delta-G solvation = -22317.096796 eV Core-core repulsion = 19056.802524 eV Total energy + Delta-G solvation = -3260.294273 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.13534 -38.38032 -37.37571 -36.96865 -36.72265 -34.27946 -32.64877 -30.80258 -30.25749 -28.42124 -27.25610 -24.10157 -22.81108 -22.56556 -21.82900 -20.48871 -19.43840 -18.41809 -17.98098 -17.52004 -17.01305 -16.63831 -16.23384 -15.99921 -15.38343 -15.10319 -14.59698 -14.53785 -14.39414 -13.96817 -13.85016 -13.70283 -13.49351 -13.40241 -13.21066 -13.14281 -12.91978 -12.67715 -12.60353 -12.32979 -12.12957 -12.12802 -11.87284 -11.83089 -11.80386 -11.22305 -10.83896 -10.26756 -10.10085 -9.76984 -8.35391 -6.40536 -0.58913 -0.21465 0.23157 1.28930 1.31903 1.40364 2.02662 2.27841 2.39655 2.77864 3.03407 3.19921 3.43111 3.55644 3.85750 4.02932 4.10855 4.17548 4.21800 4.23434 4.51151 4.58112 4.61590 4.75102 4.82475 4.83733 4.88961 4.92774 4.99257 5.04769 5.08573 5.18626 5.28971 5.33851 5.41553 5.45714 5.51536 5.82171 6.24204 6.29291 6.66304 7.24596 8.80150 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.012347 B = 0.008322 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.163028 B = 3363.718403 C = 4678.412372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.246 3.754 3 H 0.039 0.961 4 C -0.517 4.517 5 H 0.052 0.948 6 C 0.028 3.972 7 N -0.934 5.934 8 Si 0.904 3.096 9 H -0.259 1.259 10 H -0.239 1.239 11 H -0.280 1.280 12 N -1.096 6.096 13 S 2.702 3.298 14 O -0.987 6.987 15 O -0.985 6.985 16 C -0.683 4.683 17 C -0.033 4.033 18 C -0.132 4.132 19 C -0.053 4.053 20 C -0.139 4.139 21 C -0.034 4.034 22 C -0.092 4.092 23 C -0.111 4.111 24 C -0.087 4.087 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.269 0.731 29 H 0.419 0.581 30 H 0.152 0.848 31 H 0.161 0.839 32 H 0.130 0.870 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.111 11.283 -9.305 16.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.140 3.860 3 H 0.057 0.943 4 C -0.557 4.557 5 H 0.071 0.929 6 C -0.172 4.172 7 N -0.573 5.573 8 Si 0.726 3.274 9 H -0.183 1.183 10 H -0.162 1.162 11 H -0.206 1.206 12 N -0.856 5.856 13 S 2.794 3.206 14 O -0.977 6.977 15 O -0.975 6.975 16 C -0.772 4.772 17 C -0.052 4.052 18 C -0.150 4.150 19 C -0.053 4.053 20 C -0.140 4.140 21 C -0.054 4.054 22 C -0.129 4.129 23 C -0.148 4.148 24 C -0.124 4.124 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.255 0.745 30 H 0.169 0.831 31 H 0.179 0.821 32 H 0.148 0.852 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.118 0.882 37 H 0.112 0.888 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.710 11.469 -9.946 17.027 hybrid contribution 0.246 0.016 0.985 1.016 sum 7.956 11.485 -8.961 16.598 Atomic orbital electron populations 1.22373 0.96820 1.01936 1.00795 1.18734 0.92214 0.91919 0.83110 0.94324 1.21253 1.43683 0.95025 0.95767 0.92937 1.25672 0.93900 1.02560 0.95040 1.69995 1.46186 1.37848 1.03287 0.86377 0.80954 0.81502 0.78526 1.18343 1.16229 1.20557 1.55494 1.81171 1.19260 1.29710 1.01321 0.73704 0.73043 0.72545 1.93505 1.82605 1.62129 1.59505 1.93515 1.52145 1.67297 1.84518 1.30747 1.17080 1.10438 1.18894 1.21076 0.90624 1.00040 0.93445 1.21101 1.00216 0.93376 1.00355 1.21466 0.96082 0.94939 0.92836 1.21133 0.93677 0.98643 1.00551 1.20523 0.99884 0.91801 0.93171 1.21256 1.00271 0.90455 1.00898 1.22337 0.92005 0.96431 1.04020 1.21305 0.96699 0.91364 1.02990 0.92093 0.92628 0.92889 0.92226 0.74521 0.83055 0.82122 0.85189 0.89252 0.90500 0.89405 0.88154 0.88823 0.87683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.60 9.46 71.98 0.68 -5.92 16 2 C 0.25 11.05 2.36 44.24 0.10 11.15 16 3 H 0.04 1.74 4.60 -2.39 -0.01 1.72 16 4 C -0.52 -27.50 9.11 25.60 0.23 -27.27 16 5 H 0.05 3.04 8.06 -2.91 -0.02 3.02 16 6 C 0.03 1.55 5.47 84.66 0.46 2.01 16 7 N -0.93 -55.14 13.96 21.45 0.30 -54.84 16 8 Si 0.90 40.95 26.68 68.60 1.83 42.78 16 9 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 10 H -0.24 -10.05 6.88 99.48 0.68 -9.37 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 12 N -1.10 -43.30 5.46 -172.53 -0.94 -44.24 16 13 S 2.70 101.55 5.65 -56.49 -0.32 101.23 16 14 O -0.99 -38.44 17.29 -128.00 -2.21 -40.65 16 15 O -0.98 -40.26 16.63 -128.00 -2.13 -42.39 16 16 C -0.68 -24.39 5.81 22.24 0.13 -24.26 16 17 C -0.03 -1.03 9.52 22.24 0.21 -0.82 16 18 C -0.13 -3.52 10.04 22.30 0.22 -3.30 16 19 C -0.05 -1.39 6.14 -19.60 -0.12 -1.51 16 20 C -0.14 -4.19 6.14 -19.59 -0.12 -4.31 16 21 C -0.03 -1.21 8.92 22.30 0.20 -1.01 16 22 C -0.09 -2.08 6.77 30.52 0.21 -1.87 16 23 C -0.11 -1.72 7.08 31.50 0.22 -1.50 16 24 C -0.09 -1.52 6.77 30.51 0.21 -1.32 16 25 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.05 2.28 7.87 -2.39 -0.02 2.26 16 27 H 0.05 2.04 7.74 -2.39 -0.02 2.02 16 28 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 29 H 0.42 15.29 8.83 -96.74 -0.85 14.43 16 30 H 0.15 4.25 7.62 -2.91 -0.02 4.23 16 31 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 32 H 0.13 4.49 7.61 -2.91 -0.02 4.46 16 33 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -68.76 326.03 -0.64 -69.39 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: 0.20 Total: 28.64 kcal Atomic # 6 Polarization: -62.56 SS G_CDS: 2.64 Total: -59.92 kcal Atomic # 7 Polarization: -98.44 SS G_CDS: -0.64 Total: -99.08 kcal Atomic # 8 Polarization: -78.70 SS G_CDS: -4.34 Total: -83.04 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 1.83 Total: 42.78 kcal Atomic # 16 Polarization: 101.55 SS G_CDS: -0.32 Total: 101.23 kcal Total: -68.76 -0.64 -69.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336724.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.672 kcal (2) G-P(sol) polarization free energy of solvation -68.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds