Wall clock time and date at job start Tue Mar 31 2020 07:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46916 * 2 1 4 4 C 1.50698 * 109.47217 * 239.99834 * 2 1 3 5 5 H 1.07998 * 120.00078 * 240.00171 * 4 2 1 6 6 C 1.37878 * 119.99786 * 60.00007 * 4 2 1 7 7 N 1.31515 * 120.00148 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00004 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47143 * 89.99497 * 8 6 4 10 10 H 1.48496 * 109.47257 * 210.00075 * 8 6 4 11 11 H 1.48502 * 109.46704 * 329.99843 * 8 6 4 12 12 N 1.46505 * 109.46892 * 119.99583 * 2 1 3 13 13 S 1.65600 * 120.00031 * 264.99878 * 12 2 1 14 14 O 1.42097 * 106.40408 * 311.46430 * 13 12 2 15 15 O 1.42099 * 106.39710 * 178.54194 * 13 12 2 16 16 C 1.76203 * 107.21504 * 65.00433 * 13 12 2 17 17 C 1.38256 * 120.02842 * 90.00227 * 16 13 12 18 18 C 1.38105 * 119.93154 * 180.02562 * 17 16 13 19 19 C 1.38497 * 120.21438 * 359.97035 * 18 17 16 20 20 C 1.38216 * 119.85394 * 0.02955 * 19 18 17 21 21 C 1.38096 * 120.03465 * 269.99408 * 16 13 12 22 22 C 1.51362 * 109.76055 * 180.02562 * 20 19 18 23 23 C 1.54347 * 105.17257 * 342.81694 * 22 20 19 24 24 C 1.51680 * 130.30808 * 179.85164 * 19 18 17 25 25 H 1.08999 * 109.47278 * 299.99688 * 1 2 3 26 26 H 1.08998 * 109.47338 * 60.00136 * 1 2 3 27 27 H 1.09005 * 109.47109 * 180.02562 * 1 2 3 28 28 H 0.97000 * 120.00126 * 180.02562 * 7 6 4 29 29 H 0.96999 * 119.99306 * 85.00207 * 12 2 1 30 30 H 1.07997 * 120.03503 * 0.02562 * 17 16 13 31 31 H 1.08004 * 119.89275 * 179.97438 * 18 17 16 32 32 H 1.08005 * 119.89126 * 0.02922 * 21 16 13 33 33 H 1.09002 * 110.30308 * 223.88922 * 22 20 19 34 34 H 1.09003 * 110.38787 * 101.77978 * 22 20 19 35 35 H 1.09002 * 110.82432 * 144.56982 * 23 22 20 36 36 H 1.09005 * 110.82182 * 267.92439 * 23 22 20 37 37 H 1.08998 * 110.25544 * 78.26854 * 24 19 18 38 38 H 1.09000 * 110.49386 * 316.01666 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3428 -2.1618 -4.4118 10 1 2.4866 -0.1415 -5.1122 11 1 3.6294 -1.7583 -3.7121 12 7 2.0183 -0.6906 1.1963 13 16 2.4122 0.1773 2.5505 14 8 3.2436 1.2444 2.1156 15 8 2.8124 -0.7697 3.5315 16 6 0.9274 0.9148 3.1474 17 6 0.1379 0.2400 4.0599 18 6 -1.0257 0.8197 4.5260 19 6 -1.4046 2.0759 4.0827 20 6 -0.6153 2.7506 3.1704 21 6 0.5513 2.1675 2.7043 22 6 -1.2390 4.0913 2.8471 23 6 -2.7043 3.9796 3.3191 24 6 -2.6181 2.9155 4.4337 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.7081 1.1608 -3.4844 29 1 2.1110 -1.6561 1.1949 30 1 0.4309 -0.7395 4.4079 31 1 -1.6422 0.2917 5.2385 32 1 1.1684 2.6940 1.9911 33 1 -1.2005 4.2773 1.7737 34 1 -0.7275 4.8882 3.3870 35 1 -3.0566 4.9309 3.7178 36 1 -3.3479 3.6392 2.5078 37 1 -2.4783 3.3941 5.4030 38 1 -3.5183 2.3010 4.4407 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050336726.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:15 Heat of formation + Delta-G solvation = -82.045965 kcal Electronic energy + Delta-G solvation = -22022.607238 eV Core-core repulsion = 18762.357222 eV Total energy + Delta-G solvation = -3260.250016 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.08104 -38.33263 -37.31381 -36.94964 -36.65585 -34.13496 -32.58301 -30.23279 -30.12261 -28.34434 -27.24214 -24.04512 -22.83746 -22.64384 -21.75697 -20.28733 -19.16125 -18.49087 -17.77883 -17.27453 -16.92535 -16.54508 -16.24870 -15.98646 -15.35929 -15.03412 -14.56161 -14.35223 -14.05711 -13.94862 -13.75495 -13.56836 -13.37644 -13.20058 -13.13336 -13.00750 -12.81617 -12.58742 -12.45199 -12.25001 -12.08024 -12.06453 -12.01226 -11.83532 -11.69275 -11.13661 -10.60571 -10.17484 -9.98445 -9.71283 -8.14949 -6.29036 -0.54018 -0.17080 0.29484 1.44811 1.46305 1.56289 2.11118 2.43031 2.48499 2.82909 3.14680 3.26108 3.48985 3.61960 3.93189 4.09305 4.17549 4.26592 4.29794 4.51535 4.58414 4.65944 4.82231 4.87907 4.91292 4.95347 5.01276 5.06125 5.11485 5.12573 5.15434 5.24646 5.35149 5.48214 5.57506 5.74198 5.87500 6.01922 6.10865 6.40436 6.80904 7.40160 8.90506 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.016907 B = 0.005430 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.738649 B = 5155.113239 C = 6206.674849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.275 3.725 3 H 0.020 0.980 4 C -0.543 4.543 5 H 0.065 0.935 6 C 0.018 3.982 7 N -0.913 5.913 8 Si 0.964 3.036 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.271 1.271 12 N -1.100 6.100 13 S 2.702 3.298 14 O -1.000 7.000 15 O -0.989 6.989 16 C -0.675 4.675 17 C -0.032 4.032 18 C -0.129 4.129 19 C -0.049 4.049 20 C -0.133 4.133 21 C -0.025 4.025 22 C -0.089 4.089 23 C -0.115 4.115 24 C -0.082 4.082 25 H 0.032 0.968 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.266 0.734 29 H 0.417 0.583 30 H 0.152 0.848 31 H 0.163 0.837 32 H 0.118 0.882 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.120 3.867 13.588 17.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.169 3.831 3 H 0.038 0.962 4 C -0.583 4.583 5 H 0.083 0.917 6 C -0.183 4.183 7 N -0.552 5.552 8 Si 0.789 3.211 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.860 5.860 13 S 2.795 3.205 14 O -0.991 6.991 15 O -0.980 6.980 16 C -0.765 4.765 17 C -0.051 4.051 18 C -0.148 4.148 19 C -0.049 4.049 20 C -0.134 4.134 21 C -0.044 4.044 22 C -0.126 4.126 23 C -0.152 4.152 24 C -0.119 4.119 25 H 0.051 0.949 26 H 0.088 0.912 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.252 0.748 30 H 0.170 0.830 31 H 0.181 0.819 32 H 0.136 0.864 33 H 0.090 0.910 34 H 0.112 0.888 35 H 0.123 0.877 36 H 0.091 0.909 37 H 0.124 0.876 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.365 4.268 13.807 17.220 hybrid contribution 0.116 -0.644 -1.210 1.376 sum -9.249 3.624 12.597 16.042 Atomic orbital electron populations 1.22092 0.97546 1.00094 1.00672 1.18311 0.91435 0.91592 0.81742 0.96238 1.21592 1.32175 1.13451 0.91059 0.91650 1.25687 0.95057 0.95696 1.01837 1.69981 1.36990 1.23645 1.24545 0.85473 0.78823 0.78256 0.78563 1.19679 1.20904 1.19565 1.55316 1.83980 1.19504 1.27214 1.01117 0.74335 0.72824 0.72196 1.93510 1.65763 1.57679 1.82117 1.93491 1.82216 1.62270 1.60014 1.30552 1.24510 1.07392 1.14048 1.21053 0.92813 0.99226 0.91991 1.21077 0.96853 0.95080 1.01784 1.21508 0.96578 0.93766 0.93055 1.21035 0.94769 0.98800 0.98825 1.20403 0.95540 0.92621 0.95873 1.21213 0.96535 0.92545 1.02284 1.22341 0.94491 1.00248 0.98122 1.21335 0.94279 0.95889 1.00383 0.94876 0.91175 0.94275 0.92496 0.74758 0.83036 0.81944 0.86398 0.90969 0.88826 0.87729 0.90851 0.87622 0.88329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.69 9.29 71.98 0.67 -6.02 16 2 C 0.27 13.61 2.90 44.25 0.13 13.74 16 3 H 0.02 1.10 7.50 -2.39 -0.02 1.08 16 4 C -0.54 -29.15 8.76 25.60 0.22 -28.92 16 5 H 0.07 3.40 7.81 -2.91 -0.02 3.38 16 6 C 0.02 0.94 5.30 84.65 0.45 1.39 16 7 N -0.91 -50.70 11.32 21.45 0.24 -50.46 16 8 Si 0.96 42.52 29.54 68.60 2.03 44.54 16 9 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 12 N -1.10 -46.12 5.46 -172.51 -0.94 -47.07 16 13 S 2.70 108.41 5.72 -56.49 -0.32 108.08 16 14 O -1.00 -47.31 16.62 -128.00 -2.13 -49.43 16 15 O -0.99 -39.98 17.29 -128.00 -2.21 -42.19 16 16 C -0.68 -23.67 5.06 22.24 0.11 -23.55 16 17 C -0.03 -0.91 9.52 22.24 0.21 -0.70 16 18 C -0.13 -3.03 10.04 22.30 0.22 -2.81 16 19 C -0.05 -1.14 6.15 -19.49 -0.12 -1.26 16 20 C -0.13 -3.79 6.14 -19.60 -0.12 -3.91 16 21 C -0.02 -0.87 8.58 22.30 0.19 -0.68 16 22 C -0.09 -1.91 6.77 30.52 0.21 -1.70 16 23 C -0.11 -1.72 7.07 31.51 0.22 -1.50 16 24 C -0.08 -1.22 6.80 30.61 0.21 -1.01 16 25 H 0.03 1.36 6.17 -2.39 -0.01 1.35 16 26 H 0.07 3.59 6.07 -2.39 -0.01 3.58 16 27 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 28 H 0.27 13.98 8.31 -92.71 -0.77 13.20 16 29 H 0.42 15.69 8.83 -96.74 -0.85 14.84 16 30 H 0.15 3.86 7.62 -2.91 -0.02 3.84 16 31 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 32 H 0.12 4.48 7.61 -2.91 -0.02 4.46 16 33 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -68.74 324.60 -0.51 -69.25 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.22 Total: 24.21 kcal Atomic # 6 Polarization: -59.54 SS G_CDS: 2.61 Total: -56.94 kcal Atomic # 7 Polarization: -96.82 SS G_CDS: -0.70 Total: -97.52 kcal Atomic # 8 Polarization: -87.28 SS G_CDS: -4.34 Total: -91.62 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 16 Polarization: 108.41 SS G_CDS: -0.32 Total: 108.08 kcal Total: -68.74 -0.51 -69.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336726.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.801 kcal (2) G-P(sol) polarization free energy of solvation -68.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds