Wall clock time and date at job start Tue Mar 31 2020 07:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46737 * 2 1 4 4 O 1.42893 * 109.47269 * 240.00126 * 2 1 3 5 5 C 1.53000 * 109.46813 * 120.00008 * 2 1 3 6 6 N 1.46503 * 109.46942 * 185.00377 * 5 2 1 7 7 C 1.46500 * 119.99665 * 270.00284 * 6 5 2 8 8 C 1.34770 * 120.00039 * 89.99466 * 6 5 2 9 9 O 1.21610 * 120.00342 * 355.72683 * 8 6 5 10 10 C 1.47429 * 119.99825 * 175.71544 * 8 6 5 11 11 C 1.39675 * 120.21266 * 48.65429 * 10 8 6 12 12 C 1.37805 * 119.93916 * 179.97438 * 11 10 8 13 13 C 1.38658 * 120.38202 * 0.02562 * 12 11 10 14 14 C 1.37905 * 120.44134 * 359.97438 * 13 12 11 15 15 C 1.39119 * 120.04566 * 359.72421 * 14 13 12 16 16 S 1.76198 * 120.19264 * 180.27338 * 15 14 13 17 17 C 1.76207 * 99.99930 * 351.87049 * 16 15 14 18 18 H 1.08007 * 119.99698 * 4.17273 * 17 16 15 19 19 C 1.38803 * 120.00229 * 184.17278 * 17 16 15 20 20 N 1.31552 * 119.99752 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00018 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47354 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47172 * 120.00133 * 21 19 17 24 24 H 1.48504 * 109.47336 * 240.00283 * 21 19 17 25 25 H 1.09008 * 109.46736 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47263 * 299.99980 * 1 2 3 27 27 H 1.09003 * 109.47020 * 60.00316 * 1 2 3 28 28 H 0.96703 * 114.00396 * 300.00067 * 4 2 1 29 29 H 1.09005 * 109.47175 * 305.00121 * 5 2 1 30 30 H 1.08996 * 109.47028 * 65.00518 * 5 2 1 31 31 H 1.08995 * 109.47429 * 94.81415 * 7 6 5 32 32 H 1.09001 * 109.46907 * 214.81979 * 7 6 5 33 33 H 1.08997 * 109.47289 * 334.80980 * 7 6 5 34 34 H 1.08006 * 120.02980 * 359.97208 * 11 10 8 35 35 H 1.08006 * 119.80693 * 179.97438 * 12 11 10 36 36 H 1.08002 * 119.78132 * 179.97438 * 13 12 11 37 37 H 1.07999 * 119.98438 * 180.02562 * 14 13 12 38 38 H 0.97008 * 119.99782 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0400 -0.7213 1.2493 6 7 3.5001 -0.6178 1.3110 7 6 4.3343 -1.6422 0.6780 8 6 4.0757 0.4198 1.9501 9 8 3.3857 1.3103 2.4080 10 6 5.5418 0.4750 2.0942 11 6 6.3656 0.2595 0.9870 12 6 7.7353 0.3130 1.1280 13 6 8.3031 0.5795 2.3647 14 6 7.5047 0.7947 3.4683 15 6 6.1197 0.7511 3.3452 16 16 5.0958 1.0326 4.7513 17 6 6.3190 1.0633 6.0193 18 1 7.3655 0.9914 5.7619 19 6 5.9377 1.1798 7.3488 20 7 4.6631 1.2669 7.6623 21 14 7.2344 1.2116 8.6930 22 1 8.5834 1.0987 8.0823 23 1 7.1372 2.4887 9.4445 24 1 7.0138 0.0733 9.6208 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.7211 -1.5952 -1.2329 29 1 1.6053 -0.2617 2.1370 30 1 1.7517 -1.7715 1.2055 31 1 4.6110 -1.3169 -0.3248 32 1 5.2354 -1.7950 1.2720 33 1 3.7774 -2.5771 0.6160 34 1 5.9293 0.0511 0.0212 35 1 8.3703 0.1457 0.2705 36 1 9.3778 0.6187 2.4643 37 1 7.9548 1.0020 4.4279 38 1 4.3966 1.3480 8.5915 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051818217.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:03 Heat of formation + Delta-G solvation = -81.136425 kcal Electronic energy + Delta-G solvation = -21483.375517 eV Core-core repulsion = 18223.164942 eV Total energy + Delta-G solvation = -3260.210575 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.28421 -39.28341 -38.35053 -36.13124 -34.79960 -32.81906 -31.88851 -31.65132 -28.28974 -27.88617 -27.12946 -24.18541 -23.51217 -22.75087 -20.99828 -19.67886 -18.38731 -17.79827 -17.60211 -17.15672 -17.01024 -16.48520 -16.36073 -15.75816 -15.44554 -15.08752 -14.66317 -14.56462 -14.46870 -13.85211 -13.72693 -13.42611 -13.38179 -13.23857 -13.00817 -12.87429 -12.82459 -12.62140 -12.51492 -12.04984 -11.90206 -11.49810 -11.42729 -11.36030 -11.04266 -10.43500 -10.32446 -9.78570 -9.50750 -8.53079 -8.49022 -6.29150 0.14295 0.50820 1.25423 1.35708 1.45291 1.59772 1.76621 2.07765 2.19265 2.81807 2.95155 3.17593 3.48864 3.64825 3.86616 3.99539 4.08385 4.19201 4.24217 4.38421 4.49927 4.59335 4.61045 4.70793 4.79138 4.82769 4.86583 4.96343 5.09823 5.15069 5.22033 5.35672 5.46846 5.52591 5.64370 5.65723 6.07537 6.14504 6.36149 6.91733 6.92264 7.20681 8.58460 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.018528 B = 0.004792 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.825640 B = 5841.386227 C = 7046.311797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.098 3.902 3 H 0.064 0.936 4 O -0.566 6.566 5 C 0.083 3.917 6 N -0.604 5.604 7 C 0.078 3.922 8 C 0.556 3.444 9 O -0.569 6.569 10 C -0.166 4.166 11 C -0.062 4.062 12 C -0.149 4.149 13 C -0.074 4.074 14 C -0.169 4.169 15 C -0.068 4.068 16 S -0.004 6.004 17 C -0.577 4.577 18 H 0.099 0.901 19 C 0.022 3.978 20 N -0.906 5.906 21 Si 0.999 3.001 22 H -0.255 1.255 23 H -0.271 1.271 24 H -0.269 1.269 25 H 0.085 0.915 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.389 0.611 29 H 0.063 0.937 30 H 0.117 0.883 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.152 0.848 35 H 0.166 0.834 36 H 0.152 0.848 37 H 0.121 0.879 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.067 -9.314 -17.131 19.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.038 3.962 3 H 0.082 0.918 4 O -0.374 6.374 5 C -0.040 4.040 6 N -0.335 5.335 7 C -0.063 4.063 8 C 0.345 3.655 9 O -0.449 6.449 10 C -0.179 4.179 11 C -0.082 4.082 12 C -0.171 4.171 13 C -0.094 4.094 14 C -0.194 4.194 15 C -0.185 4.185 16 S 0.251 5.749 17 C -0.723 4.723 18 H 0.117 0.883 19 C -0.184 4.184 20 N -0.541 5.541 21 Si 0.820 3.180 22 H -0.179 1.179 23 H -0.197 1.197 24 H -0.194 1.194 25 H 0.104 0.896 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.239 0.761 29 H 0.081 0.919 30 H 0.135 0.865 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.170 0.830 35 H 0.184 0.816 36 H 0.169 0.831 37 H 0.138 0.862 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.524 -8.102 -16.506 18.450 hybrid contribution 1.258 -0.178 1.412 1.900 sum -0.266 -8.280 -15.094 17.218 Atomic orbital electron populations 1.22357 0.93978 1.04087 1.02834 1.22054 0.94208 0.95649 0.84300 0.91754 1.86584 1.77476 1.30257 1.43082 1.22393 0.79413 1.03092 0.99065 1.47682 1.07231 1.24381 1.54248 1.22144 0.95488 0.90803 0.97887 1.18576 0.88105 0.81906 0.76935 1.90760 1.65142 1.39246 1.49767 1.19462 0.92651 1.11453 0.94316 1.21448 0.93941 0.96076 0.96711 1.21328 0.94324 1.03373 0.98116 1.21515 1.00587 0.95424 0.91913 1.21445 0.92073 1.05182 1.00746 1.22746 0.98322 0.99444 0.97989 1.84265 1.12398 1.82623 0.95581 1.23883 0.95774 1.59142 0.93530 0.88297 1.26197 0.98620 0.92725 1.00839 1.70139 1.17447 1.46375 1.20187 0.84899 0.77908 0.78410 0.76773 1.17866 1.19655 1.19356 0.89629 0.92138 0.91364 0.76107 0.91878 0.86497 0.90464 0.91885 0.88359 0.83009 0.81636 0.83056 0.86153 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 9.53 71.98 0.69 -2.28 16 2 C 0.10 2.20 3.83 30.60 0.12 2.32 16 3 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 4 O -0.57 -10.52 12.90 -148.98 -1.92 -12.44 16 5 C 0.08 2.07 5.07 86.38 0.44 2.50 16 6 N -0.60 -18.06 2.84 -850.67 -2.41 -20.47 16 7 C 0.08 1.60 8.70 127.77 1.11 2.71 16 8 C 0.56 22.93 6.72 86.67 0.58 23.51 16 9 O -0.57 -28.74 15.30 -4.06 -0.06 -28.80 16 10 C -0.17 -6.71 4.92 -19.95 -0.10 -6.81 16 11 C -0.06 -1.83 7.77 22.51 0.17 -1.65 16 12 C -0.15 -3.82 10.02 22.27 0.22 -3.59 16 13 C -0.07 -2.25 10.02 22.29 0.22 -2.03 16 14 C -0.17 -7.08 9.24 22.40 0.21 -6.88 16 15 C -0.07 -3.25 6.13 23.04 0.14 -3.11 16 16 S 0.00 -0.25 19.68 -56.49 -1.11 -1.36 16 17 C -0.58 -33.55 9.08 67.96 0.62 -32.93 16 18 H 0.10 5.41 4.86 -2.91 -0.01 5.40 16 19 C 0.02 1.24 5.49 84.87 0.47 1.70 16 20 N -0.91 -55.24 13.22 21.64 0.29 -54.96 16 21 Si 1.00 43.55 29.55 68.60 2.03 45.58 16 22 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 25 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.39 3.48 9.05 -74.06 -0.67 2.81 16 29 H 0.06 1.99 7.48 -2.38 -0.02 1.97 16 30 H 0.12 1.91 7.86 -2.39 -0.02 1.89 16 31 H 0.08 1.31 7.06 -2.39 -0.02 1.30 16 32 H 0.06 1.47 6.26 -2.39 -0.01 1.46 16 33 H 0.10 1.35 7.84 -2.39 -0.02 1.33 16 34 H 0.15 3.46 6.28 -2.91 -0.02 3.44 16 35 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 36 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 37 H 0.12 5.40 4.99 -2.91 -0.01 5.39 16 38 H 0.28 15.47 8.31 -92.70 -0.77 14.69 16 Total: -1.00 -81.17 330.01 2.12 -79.06 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.42 Total: 19.92 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: 4.89 Total: -26.53 kcal Atomic # 7 Polarization: -73.30 SS G_CDS: -2.13 Total: -75.43 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -1.98 Total: -41.24 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: -0.25 SS G_CDS: -1.11 Total: -1.36 kcal Total: -81.17 2.12 -79.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051818217.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.081 kcal (2) G-P(sol) polarization free energy of solvation -81.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds