Wall clock time and date at job start Tue Mar 31 2020 07:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35969 * 116.99551 * 2 1 4 4 C 1.38727 * 119.98451 * 180.02562 * 3 2 1 5 5 C 1.38078 * 120.01662 * 180.02562 * 4 3 2 6 6 C 1.38846 * 119.98693 * 359.97438 * 5 4 3 7 7 N 1.40113 * 120.01553 * 180.02562 * 6 5 4 8 8 C 1.34777 * 119.99704 * 146.82409 * 7 6 5 9 9 O 1.21295 * 120.00169 * 354.72031 * 8 7 6 10 10 C 1.50701 * 119.99955 * 174.73189 * 8 7 6 11 11 H 1.08999 * 109.47254 * 324.99354 * 10 8 7 12 12 C 1.52996 * 109.47581 * 84.99650 * 10 8 7 13 13 S 1.81404 * 109.47180 * 204.99858 * 10 8 7 14 14 C 1.81397 * 103.00029 * 174.99715 * 13 10 8 15 15 C 1.50697 * 109.47009 * 179.97438 * 14 13 10 16 16 H 1.08004 * 120.00132 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00224 * 180.02562 * 15 14 13 18 18 N 1.31524 * 119.99758 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00330 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47210 * 89.99638 * 19 17 15 21 21 H 1.48503 * 109.47131 * 209.99676 * 19 17 15 22 22 H 1.48493 * 109.46980 * 329.99519 * 19 17 15 23 23 C 1.38846 * 119.96984 * 0.28127 * 6 5 4 24 24 C 1.38086 * 119.98220 * 359.44379 * 23 6 5 25 25 H 1.08996 * 109.47297 * 300.00130 * 1 2 3 26 26 H 1.08994 * 109.46928 * 60.00494 * 1 2 3 27 27 H 1.09002 * 109.46816 * 179.97438 * 1 2 3 28 28 H 1.08003 * 119.98878 * 359.97438 * 4 3 2 29 29 H 1.08005 * 120.01190 * 179.97438 * 5 4 3 30 30 H 0.96990 * 120.00329 * 326.81770 * 7 6 5 31 31 H 1.08999 * 109.47068 * 59.99590 * 12 10 8 32 32 H 1.08999 * 109.47535 * 180.02562 * 12 10 8 33 33 H 1.08999 * 109.46898 * 300.00122 * 12 10 8 34 34 H 1.09001 * 109.47024 * 299.99692 * 14 13 10 35 35 H 1.08996 * 109.47423 * 59.99962 * 14 13 10 36 36 H 0.96997 * 119.99640 * 179.97438 * 18 17 15 37 37 H 1.08001 * 120.00927 * 179.70217 * 23 6 5 38 38 H 1.08001 * 119.99561 * 180.28048 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4316 1.2839 -0.0005 5 6 4.0591 2.5139 0.0000 6 6 3.3032 3.6785 0.0005 7 7 3.9393 4.9269 0.0005 8 6 3.3744 5.9710 -0.6378 9 8 2.3660 5.8084 -1.2919 10 6 3.9959 7.3403 -0.5390 11 1 4.4260 7.4734 0.4537 12 6 5.0953 7.4788 -1.5939 13 16 2.7246 8.6032 -0.8212 14 6 3.6145 10.1538 -0.5144 15 6 2.6782 11.3179 -0.7124 16 1 1.6507 11.1425 -0.9950 17 6 3.1336 12.6070 -0.5338 18 7 4.3850 12.8206 -0.1902 19 14 1.9729 14.0500 -0.7786 20 1 1.3054 14.3722 0.5082 21 1 2.7427 15.2307 -1.2462 22 1 0.9479 13.6942 -1.7924 23 6 1.9167 3.6055 0.0064 24 6 1.2904 2.3748 0.0002 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 4.0195 0.3779 -0.0005 29 1 5.1377 2.5701 0.0000 30 1 4.7860 5.0399 0.4599 31 1 4.6652 7.3457 -2.5865 32 1 5.5452 8.4691 -1.5221 33 1 5.8592 6.7200 -1.4242 34 1 3.9914 10.1601 0.5083 35 1 4.4495 10.2372 -1.2099 36 1 4.7054 13.7275 -0.0649 37 1 1.3281 4.5110 0.0117 38 1 0.2119 2.3177 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058256413.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:07 Heat of formation + Delta-G solvation = -51.343512 kcal Electronic energy + Delta-G solvation = -20285.017550 eV Core-core repulsion = 17026.098892 eV Total energy + Delta-G solvation = -3258.918657 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.71709 -39.62554 -37.43856 -34.43728 -33.22062 -32.86891 -31.25460 -29.23698 -28.51249 -27.29805 -24.64023 -23.18814 -23.09145 -22.05618 -20.35556 -18.42053 -17.86525 -17.16440 -16.50867 -16.04978 -15.90766 -15.45496 -15.06719 -14.68119 -14.52428 -14.14604 -13.91346 -13.60816 -13.30516 -13.03571 -12.88690 -12.48279 -12.38226 -12.24691 -12.15711 -11.74581 -11.60489 -11.52572 -11.08451 -10.88630 -10.70569 -10.05103 -9.93435 -9.73126 -9.56001 -9.15761 -8.80116 -8.63150 -7.84270 -6.71048 -6.21885 -4.25655 1.12316 1.22370 2.20547 2.70641 3.03063 3.16610 3.25661 3.31364 3.37235 3.64905 3.78876 4.34436 4.58443 4.68648 4.76996 4.88014 4.90017 5.08018 5.11629 5.15696 5.20695 5.22053 5.28193 5.40704 5.67854 5.70399 5.84335 5.93676 6.19739 6.22510 6.28238 6.31444 6.69317 7.04956 7.07537 7.19193 7.30539 7.73316 7.98760 8.14352 8.76315 9.37552 10.89505 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.036022 B = 0.002679 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.122795 B =10450.494170 C =11042.454272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.106 3.894 4 C -0.133 4.133 5 C -0.109 4.109 6 C 0.119 3.881 7 N -0.674 5.674 8 C 0.538 3.462 9 O -0.498 6.498 10 C -0.097 4.097 11 H 0.100 0.900 12 C -0.138 4.138 13 S -0.236 6.236 14 C 0.078 3.922 15 C -0.511 4.511 16 H 0.067 0.933 17 C 0.066 3.934 18 N -0.893 5.893 19 Si 0.907 3.093 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.270 1.270 23 C -0.080 4.080 24 C -0.185 4.185 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.098 0.902 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.410 0.590 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.035 0.965 35 H 0.039 0.961 36 H 0.265 0.735 37 H 0.140 0.860 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.174 -22.906 2.394 23.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.060 3.940 4 C -0.152 4.152 5 C -0.129 4.129 6 C 0.025 3.975 7 N -0.321 5.321 8 C 0.324 3.676 9 O -0.370 6.370 10 C -0.228 4.228 11 H 0.118 0.882 12 C -0.197 4.197 13 S -0.009 6.009 14 C -0.069 4.069 15 C -0.550 4.550 16 H 0.086 0.914 17 C -0.138 4.138 18 N -0.531 5.531 19 Si 0.734 3.266 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.195 1.195 23 C -0.101 4.101 24 C -0.205 4.205 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.116 0.884 28 H 0.151 0.849 29 H 0.150 0.850 30 H 0.246 0.754 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.158 0.842 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.414 -23.148 1.665 23.251 hybrid contribution 1.041 1.256 0.570 1.728 sum -0.373 -21.892 2.235 22.009 Atomic orbital electron populations 1.23046 0.78459 1.03780 1.01530 1.86052 1.21328 1.26924 1.89100 1.18994 0.92340 0.84126 0.98515 1.20149 0.91285 0.97938 1.05828 1.20686 0.99707 0.90345 1.02198 1.17667 0.91937 0.84713 1.03211 1.43533 1.25752 1.08038 1.54768 1.20195 0.84216 0.85214 0.77987 1.90726 1.23811 1.84182 1.38270 1.23161 1.01201 0.94654 1.03817 0.88186 1.21972 0.96176 1.03248 0.98352 1.87175 1.19258 1.01897 1.92577 1.21185 0.97422 0.88585 0.99669 1.20641 0.96969 0.89191 1.48248 0.91438 1.24953 0.95473 0.98742 0.94643 1.69951 1.14757 1.21664 1.46763 0.86345 0.80509 0.81069 0.78726 1.20340 1.20968 1.19495 1.21040 0.93188 0.98301 0.97522 1.21141 1.00185 0.91684 1.07464 0.92623 0.92575 0.88357 0.84915 0.84962 0.75407 0.90965 0.90349 0.92500 0.94701 0.94311 0.92503 0.84183 0.85157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.31 10.50 -19.64 -0.21 -3.52 16 3 C 0.11 1.19 6.69 -39.22 -0.26 0.92 16 4 C -0.13 -1.36 9.98 -39.46 -0.39 -1.75 16 5 C -0.11 -1.10 9.96 -39.42 -0.39 -1.49 16 6 C 0.12 1.48 6.28 -83.62 -0.53 0.95 16 7 N -0.67 -8.14 5.35 -9.83 -0.05 -8.19 16 8 C 0.54 8.56 6.69 -10.99 -0.07 8.48 16 9 O -0.50 -9.68 13.84 5.54 0.08 -9.60 16 10 C -0.10 -1.59 3.18 -27.88 -0.09 -1.68 16 11 H 0.10 1.46 8.14 -51.92 -0.42 1.04 16 12 C -0.14 -2.03 9.08 37.16 0.34 -1.69 16 13 S -0.24 -5.22 20.38 -107.50 -2.19 -7.41 16 14 C 0.08 1.99 5.39 36.00 0.19 2.18 16 15 C -0.51 -14.32 9.13 -34.44 -0.31 -14.63 16 16 H 0.07 1.91 7.71 -52.48 -0.40 1.51 16 17 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 18 N -0.89 -25.56 13.29 55.43 0.74 -24.82 16 19 Si 0.91 21.30 29.54 -169.99 -5.02 16.28 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 C -0.08 -1.09 8.65 -39.41 -0.34 -1.43 16 24 C -0.19 -2.16 9.03 -39.46 -0.36 -2.52 16 25 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 26 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 27 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 29 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 30 H 0.41 3.54 8.82 -40.82 -0.36 3.18 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.08 1.24 6.92 -51.93 -0.36 0.88 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.03 0.91 8.14 -51.92 -0.42 0.49 16 35 H 0.04 1.00 7.14 -51.93 -0.37 0.63 16 36 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.14 2.16 6.42 -52.49 -0.34 1.82 16 38 H 0.13 1.27 6.29 -52.49 -0.33 0.94 16 LS Contribution 337.28 15.07 5.08 5.08 Total: -1.00 -32.69 337.28 -7.95 -40.64 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -5.05 Total: 1.28 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -1.32 Total: -9.75 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: 0.68 Total: -33.01 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.13 Total: -13.12 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -5.22 SS G_CDS: -2.19 Total: -7.41 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.69 -7.95 -40.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058256413.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.702 kcal (2) G-P(sol) polarization free energy of solvation -32.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds