Wall clock time and date at job start Tue Mar 31 2020 07:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35969 * 116.99551 * 2 1 4 4 C 1.38727 * 119.98451 * 180.02562 * 3 2 1 5 5 C 1.38078 * 120.01662 * 180.02562 * 4 3 2 6 6 C 1.38846 * 119.98693 * 359.97438 * 5 4 3 7 7 N 1.40113 * 120.01553 * 180.02562 * 6 5 4 8 8 C 1.34777 * 119.99704 * 146.82409 * 7 6 5 9 9 O 1.21295 * 120.00169 * 354.72031 * 8 7 6 10 10 C 1.50701 * 119.99955 * 174.73189 * 8 7 6 11 11 H 1.08999 * 109.47254 * 324.99354 * 10 8 7 12 12 C 1.52996 * 109.47581 * 84.99650 * 10 8 7 13 13 S 1.81404 * 109.47180 * 204.99858 * 10 8 7 14 14 C 1.81397 * 103.00029 * 174.99715 * 13 10 8 15 15 C 1.50697 * 109.47009 * 179.97438 * 14 13 10 16 16 H 1.08004 * 120.00132 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00224 * 180.02562 * 15 14 13 18 18 N 1.31524 * 119.99758 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00330 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47210 * 89.99638 * 19 17 15 21 21 H 1.48503 * 109.47131 * 209.99676 * 19 17 15 22 22 H 1.48493 * 109.46980 * 329.99519 * 19 17 15 23 23 C 1.38846 * 119.96984 * 0.28127 * 6 5 4 24 24 C 1.38086 * 119.98220 * 359.44379 * 23 6 5 25 25 H 1.08996 * 109.47297 * 300.00130 * 1 2 3 26 26 H 1.08994 * 109.46928 * 60.00494 * 1 2 3 27 27 H 1.09002 * 109.46816 * 179.97438 * 1 2 3 28 28 H 1.08003 * 119.98878 * 359.97438 * 4 3 2 29 29 H 1.08005 * 120.01190 * 179.97438 * 5 4 3 30 30 H 0.96990 * 120.00329 * 326.81770 * 7 6 5 31 31 H 1.08999 * 109.47068 * 59.99590 * 12 10 8 32 32 H 1.08999 * 109.47535 * 180.02562 * 12 10 8 33 33 H 1.08999 * 109.46898 * 300.00122 * 12 10 8 34 34 H 1.09001 * 109.47024 * 299.99692 * 14 13 10 35 35 H 1.08996 * 109.47423 * 59.99962 * 14 13 10 36 36 H 0.96997 * 119.99640 * 179.97438 * 18 17 15 37 37 H 1.08001 * 120.00927 * 179.70217 * 23 6 5 38 38 H 1.08001 * 119.99561 * 180.28048 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4316 1.2839 -0.0005 5 6 4.0591 2.5139 0.0000 6 6 3.3032 3.6785 0.0005 7 7 3.9393 4.9269 0.0005 8 6 3.3744 5.9710 -0.6378 9 8 2.3660 5.8084 -1.2919 10 6 3.9959 7.3403 -0.5390 11 1 4.4260 7.4734 0.4537 12 6 5.0953 7.4788 -1.5939 13 16 2.7246 8.6032 -0.8212 14 6 3.6145 10.1538 -0.5144 15 6 2.6782 11.3179 -0.7124 16 1 1.6507 11.1425 -0.9950 17 6 3.1336 12.6070 -0.5338 18 7 4.3850 12.8206 -0.1902 19 14 1.9729 14.0500 -0.7786 20 1 1.3054 14.3722 0.5082 21 1 2.7427 15.2307 -1.2462 22 1 0.9479 13.6942 -1.7924 23 6 1.9167 3.6055 0.0064 24 6 1.2904 2.3748 0.0002 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 4.0195 0.3779 -0.0005 29 1 5.1377 2.5701 0.0000 30 1 4.7860 5.0399 0.4599 31 1 4.6652 7.3457 -2.5865 32 1 5.5452 8.4691 -1.5221 33 1 5.8592 6.7200 -1.4242 34 1 3.9914 10.1601 0.5083 35 1 4.4495 10.2372 -1.2099 36 1 4.7054 13.7275 -0.0649 37 1 1.3281 4.5110 0.0117 38 1 0.2119 2.3177 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058256413.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:07 Heat of formation + Delta-G solvation = -72.067800 kcal Electronic energy + Delta-G solvation = -20285.916222 eV Core-core repulsion = 17026.098892 eV Total energy + Delta-G solvation = -3259.817330 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.73345 -40.58693 -38.36342 -35.56693 -35.28935 -34.14919 -32.11058 -30.65355 -30.04418 -28.00264 -25.83336 -25.23332 -24.05304 -22.97301 -21.51308 -19.32059 -18.97772 -18.47591 -18.26202 -17.18882 -16.93104 -16.61968 -16.39859 -16.22895 -15.53625 -15.34162 -15.03930 -14.75216 -14.50020 -14.38528 -14.31024 -13.88686 -13.72731 -13.56196 -13.25663 -12.96935 -12.82685 -12.71471 -12.56696 -12.37372 -11.89897 -11.84027 -11.59356 -11.13906 -10.83441 -10.73909 -10.58200 -10.02424 -8.75753 -8.51705 -8.33806 -6.45754 0.21618 0.32313 0.70689 1.40034 1.40650 1.48076 1.53495 1.91998 2.03010 2.36846 2.39697 2.76527 3.01068 3.51938 3.83459 3.84237 3.89674 3.99298 4.20330 4.34715 4.38637 4.46378 4.51856 4.60051 4.68847 4.72366 4.84670 4.94838 4.95544 5.04061 5.13828 5.28965 5.34334 5.39577 5.57142 5.77933 5.90021 6.31401 6.40795 6.60557 7.01558 7.21732 8.77958 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.036022 B = 0.002679 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.122795 B =10450.494170 C =11042.454272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.330 6.330 3 C 0.102 3.898 4 C -0.134 4.134 5 C -0.093 4.093 6 C 0.097 3.903 7 N -0.651 5.651 8 C 0.540 3.460 9 O -0.540 6.540 10 C -0.082 4.082 11 H 0.124 0.876 12 C -0.133 4.133 13 S -0.276 6.276 14 C 0.091 3.909 15 C -0.538 4.538 16 H 0.056 0.944 17 C 0.019 3.981 18 N -0.921 5.921 19 Si 0.972 3.028 20 H -0.269 1.269 21 H -0.273 1.273 22 H -0.269 1.269 23 C -0.103 4.103 24 C -0.194 4.194 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.123 0.877 28 H 0.158 0.842 29 H 0.167 0.833 30 H 0.429 0.571 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.019 0.981 35 H 0.025 0.975 36 H 0.271 0.729 37 H 0.112 0.888 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.179 -24.646 2.790 24.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.244 6.244 3 C 0.057 3.943 4 C -0.153 4.153 5 C -0.113 4.113 6 C 0.003 3.997 7 N -0.299 5.299 8 C 0.327 3.673 9 O -0.416 6.416 10 C -0.214 4.214 11 H 0.142 0.858 12 C -0.192 4.192 13 S -0.049 6.049 14 C -0.056 4.056 15 C -0.577 4.577 16 H 0.075 0.925 17 C -0.182 4.182 18 N -0.559 5.559 19 Si 0.796 3.204 20 H -0.194 1.194 21 H -0.198 1.198 22 H -0.194 1.194 23 C -0.124 4.124 24 C -0.213 4.213 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.141 0.859 28 H 0.175 0.825 29 H 0.185 0.815 30 H 0.268 0.732 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.038 0.962 35 H 0.044 0.956 36 H 0.080 0.920 37 H 0.130 0.870 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.380 -24.914 2.091 25.005 hybrid contribution 0.731 1.574 0.479 1.800 sum 0.351 -23.340 2.570 23.484 Atomic orbital electron populations 1.23314 0.76821 1.05577 1.01923 1.86046 1.23089 1.26389 1.88848 1.19214 0.93039 0.84200 0.97873 1.20542 0.91137 0.98977 1.04684 1.20997 1.01234 0.89085 1.00001 1.17840 0.91769 0.85289 1.04796 1.43218 1.26012 1.07146 1.53533 1.20001 0.83747 0.85579 0.77994 1.90721 1.25689 1.84714 1.40446 1.23205 0.99551 0.92867 1.05786 0.85793 1.21926 0.96367 1.03990 0.96945 1.87165 1.22322 1.02657 1.92772 1.20823 0.96703 0.89961 0.98135 1.20949 0.97006 0.90811 1.48958 0.92535 1.25822 0.97104 1.01356 0.93964 1.70033 1.16212 1.22613 1.47066 0.85333 0.78460 0.77716 0.78894 1.19411 1.19807 1.19395 1.20961 0.94013 0.97970 0.99425 1.21236 1.00966 0.91407 1.07679 0.92012 0.92430 0.85925 0.82472 0.81505 0.73153 0.92275 0.91736 0.87863 0.96235 0.95649 0.92012 0.87012 0.84169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -6.19 10.50 -93.20 -0.98 -7.17 16 3 C 0.10 2.13 6.69 22.50 0.15 2.28 16 4 C -0.13 -2.36 9.98 22.35 0.22 -2.13 16 5 C -0.09 -1.58 9.96 22.38 0.22 -1.36 16 6 C 0.10 2.26 6.28 38.11 0.24 2.50 16 7 N -0.65 -14.50 5.35 -303.39 -1.62 -16.12 16 8 C 0.54 16.89 6.69 87.66 0.59 17.48 16 9 O -0.54 -21.48 13.84 -3.08 -0.04 -21.52 16 10 C -0.08 -2.66 3.18 29.85 0.09 -2.56 16 11 H 0.12 3.42 8.14 -2.39 -0.02 3.40 16 12 C -0.13 -3.74 9.08 71.98 0.65 -3.09 16 13 S -0.28 -12.58 20.38 -56.49 -1.15 -13.73 16 14 C 0.09 4.77 5.39 71.24 0.38 5.16 16 15 C -0.54 -30.98 9.13 25.60 0.23 -30.75 16 16 H 0.06 3.30 7.71 -2.91 -0.02 3.28 16 17 C 0.02 1.05 5.46 84.65 0.46 1.51 16 18 N -0.92 -53.17 13.29 21.45 0.28 -52.88 16 19 Si 0.97 43.87 29.54 68.60 2.03 45.89 16 20 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 C -0.10 -2.83 8.65 22.38 0.19 -2.64 16 24 C -0.19 -4.45 9.03 22.35 0.20 -4.25 16 25 H 0.06 0.67 7.66 -2.39 -0.02 0.65 16 26 H 0.06 0.68 7.66 -2.39 -0.02 0.66 16 27 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 29 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 30 H 0.43 6.01 8.82 -92.72 -0.82 5.19 16 31 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.06 2.01 6.92 -2.39 -0.02 1.99 16 33 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.03 1.36 7.14 -2.39 -0.02 1.35 16 36 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 37 H 0.11 3.67 6.42 -2.91 -0.02 3.65 16 38 H 0.14 2.74 6.29 -2.91 -0.02 2.72 16 Total: -1.00 -73.08 337.28 3.53 -69.54 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.26 Total: 12.51 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: 4.76 Total: -16.52 kcal Atomic # 7 Polarization: -67.67 SS G_CDS: -1.34 Total: -69.01 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -1.02 Total: -28.69 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: -12.58 SS G_CDS: -1.15 Total: -13.73 kcal Total: -73.08 3.53 -69.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058256413.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.525 kcal (2) G-P(sol) polarization free energy of solvation -73.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds