Wall clock time and date at job start Tue Mar 31 2020 07:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35969 * 116.99994 * 2 1 4 4 C 1.38557 * 120.08042 * 359.97437 * 3 2 1 5 5 C 1.38248 * 120.01118 * 180.02562 * 4 3 2 6 6 C 1.38275 * 120.18083 * 359.74062 * 5 4 3 7 7 C 1.38204 * 120.16538 * 0.51484 * 6 5 4 8 8 C 1.38729 * 119.97922 * 359.49083 * 7 6 5 9 9 N 1.40121 * 120.08397 * 180.27519 * 8 7 6 10 10 C 1.34771 * 120.00355 * 24.80558 * 9 8 7 11 11 O 1.21298 * 119.99876 * 5.53151 * 10 9 8 12 12 C 1.50700 * 120.00295 * 185.53052 * 10 9 8 13 13 H 1.08999 * 109.46756 * 39.99555 * 12 10 9 14 14 C 1.53005 * 109.46951 * 280.00074 * 12 10 9 15 15 S 1.81393 * 109.47496 * 159.99831 * 12 10 9 16 16 C 1.81396 * 103.00150 * 185.00070 * 15 12 10 17 17 C 1.50698 * 109.47051 * 180.02562 * 16 15 12 18 18 H 1.07996 * 120.00442 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00218 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00300 * 179.97438 * 19 17 16 21 21 Si 1.86809 * 119.99674 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47269 * 90.00250 * 21 19 17 23 23 H 1.48503 * 109.46908 * 209.99900 * 21 19 17 24 24 H 1.48499 * 109.47043 * 329.99539 * 21 19 17 25 25 H 1.09004 * 109.47281 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47405 * 300.00469 * 1 2 3 27 27 H 1.08999 * 109.47070 * 60.00369 * 1 2 3 28 28 H 1.07998 * 119.99442 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.91184 * 179.97438 * 5 4 3 30 30 H 1.07996 * 119.92044 * 180.27894 * 6 5 4 31 31 H 1.07993 * 120.01179 * 179.76379 * 7 6 5 32 32 H 0.97002 * 119.99334 * 204.80045 * 9 8 7 33 33 H 1.08997 * 109.47162 * 59.99971 * 14 12 10 34 34 H 1.08998 * 109.47142 * 179.97438 * 14 12 10 35 35 H 1.08994 * 109.47016 * 299.99827 * 14 12 10 36 36 H 1.09001 * 109.47482 * 299.99788 * 16 15 12 37 37 H 1.08992 * 109.47431 * 59.99961 * 16 15 12 38 38 H 0.97001 * 119.99828 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2933 2.3746 -0.0005 5 6 1.9224 3.6056 -0.0011 6 6 3.3031 3.6807 0.0043 7 6 4.0615 2.5253 -0.0004 8 6 3.4372 1.2864 0.0000 9 7 4.2040 0.1136 0.0010 10 6 5.4593 0.1295 0.4912 11 8 5.8903 1.1311 1.0224 12 6 6.3275 -1.0972 0.3794 13 1 6.1771 -1.5611 -0.5954 14 6 5.9510 -2.0906 1.4805 15 16 8.0691 -0.6240 0.5615 16 6 8.9493 -2.1791 0.2491 17 6 10.4339 -1.9482 0.3662 18 1 10.8104 -0.9644 0.6043 19 6 11.3118 -2.9928 0.1683 20 7 12.6074 -2.7913 0.2700 21 14 10.6608 -4.6945 -0.2442 22 1 10.5475 -4.8373 -1.7179 23 1 11.5941 -5.7226 0.2824 24 1 9.3234 -4.8764 0.3752 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.2147 2.3195 -0.0005 29 1 1.3339 4.5112 -0.0019 30 1 3.7902 4.6446 0.0085 31 1 5.1397 2.5868 0.0000 32 1 3.8311 -0.7098 -0.3511 33 1 4.9045 -2.3750 1.3709 34 1 6.5787 -2.9780 1.3993 35 1 6.1014 -1.6267 2.4552 36 1 8.6393 -2.9254 0.9806 37 1 8.7145 -2.5343 -0.7542 38 1 13.2250 -3.5262 0.1304 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058256425.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:10 Heat of formation + Delta-G solvation = -43.175707 kcal Electronic energy + Delta-G solvation = -20699.716590 eV Core-core repulsion = 17441.152115 eV Total energy + Delta-G solvation = -3258.564475 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.93867 -39.45397 -37.42430 -34.82750 -33.23635 -32.95507 -30.36513 -29.73672 -29.27654 -27.52051 -24.82951 -22.91525 -22.60001 -22.27482 -20.29629 -18.71431 -17.59008 -17.16096 -16.88595 -16.15960 -15.89660 -15.63914 -15.15880 -14.93366 -14.35737 -14.26807 -14.01601 -13.70270 -13.57832 -13.15434 -12.86528 -12.59005 -12.47072 -12.25751 -11.91983 -11.76571 -11.69097 -11.50133 -11.39436 -10.83737 -10.62798 -10.39000 -10.13375 -9.64351 -9.63097 -8.89741 -8.75669 -8.72163 -7.94874 -6.80923 -6.18306 -4.20589 1.09682 1.22592 2.11959 2.62974 2.89114 3.10196 3.19689 3.26855 3.27401 3.61198 3.65770 4.29673 4.53992 4.64681 4.66695 4.80147 4.85183 5.02902 5.04944 5.12507 5.14150 5.18478 5.25200 5.39628 5.60503 5.65989 5.81162 5.93200 6.07783 6.18784 6.31092 6.42858 6.54923 6.64581 6.67852 7.11373 7.29287 7.41993 8.09218 8.29868 8.85210 9.36968 10.93835 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.029958 B = 0.003196 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.415408 B = 8759.279240 C = 9493.300013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.321 6.321 3 C 0.092 3.908 4 C -0.189 4.189 5 C -0.105 4.105 6 C -0.132 4.132 7 C -0.097 4.097 8 C 0.131 3.869 9 N -0.664 5.664 10 C 0.538 3.462 11 O -0.495 6.495 12 C -0.107 4.107 13 H 0.102 0.898 14 C -0.140 4.140 15 S -0.193 6.193 16 C 0.033 3.967 17 C -0.513 4.513 18 H 0.084 0.916 19 C 0.080 3.920 20 N -0.891 5.891 21 Si 0.878 3.122 22 H -0.274 1.274 23 H -0.282 1.282 24 H -0.266 1.266 25 H 0.099 0.901 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.129 0.871 29 H 0.124 0.876 30 H 0.128 0.872 31 H 0.156 0.844 32 H 0.414 0.586 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.037 0.963 37 H 0.029 0.971 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.102 5.659 -2.029 27.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.234 6.234 3 C 0.045 3.955 4 C -0.209 4.209 5 C -0.124 4.124 6 C -0.150 4.150 7 C -0.117 4.117 8 C 0.035 3.965 9 N -0.309 5.309 10 C 0.325 3.675 11 O -0.368 6.368 12 C -0.238 4.238 13 H 0.120 0.880 14 C -0.199 4.199 15 S 0.034 5.966 16 C -0.115 4.115 17 C -0.552 4.552 18 H 0.102 0.898 19 C -0.124 4.124 20 N -0.528 5.528 21 Si 0.705 3.295 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.191 1.191 25 H 0.118 0.882 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.147 0.853 29 H 0.142 0.858 30 H 0.146 0.854 31 H 0.173 0.827 32 H 0.250 0.750 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.048 0.952 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -26.036 7.046 -1.416 27.010 hybrid contribution -1.242 -2.509 -0.780 2.906 sum -27.279 4.537 -2.196 27.741 Atomic orbital electron populations 1.23028 0.78191 1.03907 1.01311 1.85999 1.21518 1.26576 1.89348 1.18673 0.90298 0.85004 1.01569 1.21003 0.99683 0.91845 1.08329 1.20915 0.94721 0.96856 0.99900 1.21029 0.93574 0.98352 1.02086 1.21426 1.02294 0.89656 0.98357 1.17164 0.86722 0.87409 1.05189 1.43369 1.14149 1.11357 1.62035 1.20104 0.80963 0.89406 0.77070 1.90689 1.72214 1.33399 1.40478 1.23270 0.99700 0.97122 1.03742 0.87980 1.21991 1.01286 0.98598 0.98037 1.87342 0.94228 1.21214 1.93781 1.21562 0.99657 0.91617 0.98696 1.20433 0.86311 0.98679 1.49782 0.89761 1.24855 0.94572 0.98598 0.94414 1.69864 1.01524 1.32638 1.48782 0.86807 0.79269 0.84264 0.79174 1.19913 1.20808 1.19082 0.88246 0.92669 0.92677 0.85293 0.85811 0.85420 0.82688 0.75018 0.92283 0.90685 0.90740 0.94500 0.95248 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.16 9.91 -19.64 -0.19 -3.36 16 3 C 0.09 1.03 6.70 -39.07 -0.26 0.77 16 4 C -0.19 -1.78 9.04 -39.46 -0.36 -2.14 16 5 C -0.10 -0.98 10.04 -39.56 -0.40 -1.38 16 6 C -0.13 -1.44 10.04 -39.58 -0.40 -1.84 16 7 C -0.10 -1.32 8.72 -39.41 -0.34 -1.66 16 8 C 0.13 1.72 6.45 -83.49 -0.54 1.18 16 9 N -0.66 -8.62 5.29 -9.75 -0.05 -8.67 16 10 C 0.54 8.59 6.81 -10.99 -0.07 8.51 16 11 O -0.49 -9.47 13.21 5.54 0.07 -9.40 16 12 C -0.11 -1.71 3.18 -27.88 -0.09 -1.80 16 13 H 0.10 1.43 8.14 -51.92 -0.42 1.01 16 14 C -0.14 -1.97 9.08 37.16 0.34 -1.63 16 15 S -0.19 -4.18 20.32 -107.50 -2.18 -6.37 16 16 C 0.03 0.78 4.46 36.00 0.16 0.94 16 17 C -0.51 -14.66 9.68 -34.44 -0.33 -15.00 16 18 H 0.08 2.66 7.96 -52.49 -0.42 2.25 16 19 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 20 N -0.89 -26.96 13.96 55.43 0.77 -26.19 16 21 Si 0.88 20.74 27.47 -169.99 -4.67 16.07 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 25 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 27 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 28 H 0.13 0.86 6.30 -52.49 -0.33 0.53 16 29 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 30 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.16 2.41 5.79 -52.49 -0.30 2.10 16 32 H 0.41 4.34 8.35 -40.82 -0.34 4.00 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 1.09 6.92 -51.93 -0.36 0.74 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.04 0.85 6.20 -51.92 -0.32 0.53 16 37 H 0.03 0.67 7.57 -51.93 -0.39 0.28 16 38 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 331.79 15.07 5.00 5.00 Total: -1.00 -33.28 331.79 -7.62 -40.90 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -4.97 Total: 2.69 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -1.40 Total: -10.68 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.72 Total: -34.85 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -0.12 Total: -12.75 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.67 Total: 16.07 kcal Atomic # 16 Polarization: -4.18 SS G_CDS: -2.18 Total: -6.37 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.28 -7.62 -40.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058256425.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.275 kcal (2) G-P(sol) polarization free energy of solvation -33.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds