Wall clock time and date at job start Tue Mar 31 2020 07:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35969 * 116.99994 * 2 1 4 4 C 1.38557 * 120.08042 * 359.97437 * 3 2 1 5 5 C 1.38248 * 120.01118 * 180.02562 * 4 3 2 6 6 C 1.38275 * 120.18083 * 359.74062 * 5 4 3 7 7 C 1.38204 * 120.16538 * 0.51484 * 6 5 4 8 8 C 1.38729 * 119.97922 * 359.49083 * 7 6 5 9 9 N 1.40121 * 120.08397 * 180.27519 * 8 7 6 10 10 C 1.34771 * 120.00355 * 24.80558 * 9 8 7 11 11 O 1.21298 * 119.99876 * 5.53151 * 10 9 8 12 12 C 1.50700 * 120.00295 * 185.53052 * 10 9 8 13 13 H 1.08999 * 109.46756 * 39.99555 * 12 10 9 14 14 C 1.53005 * 109.46951 * 280.00074 * 12 10 9 15 15 S 1.81393 * 109.47496 * 159.99831 * 12 10 9 16 16 C 1.81396 * 103.00150 * 185.00070 * 15 12 10 17 17 C 1.50698 * 109.47051 * 180.02562 * 16 15 12 18 18 H 1.07996 * 120.00442 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00218 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00300 * 179.97438 * 19 17 16 21 21 Si 1.86809 * 119.99674 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47269 * 90.00250 * 21 19 17 23 23 H 1.48503 * 109.46908 * 209.99900 * 21 19 17 24 24 H 1.48499 * 109.47043 * 329.99539 * 21 19 17 25 25 H 1.09004 * 109.47281 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47405 * 300.00469 * 1 2 3 27 27 H 1.08999 * 109.47070 * 60.00369 * 1 2 3 28 28 H 1.07998 * 119.99442 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.91184 * 179.97438 * 5 4 3 30 30 H 1.07996 * 119.92044 * 180.27894 * 6 5 4 31 31 H 1.07993 * 120.01179 * 179.76379 * 7 6 5 32 32 H 0.97002 * 119.99334 * 204.80045 * 9 8 7 33 33 H 1.08997 * 109.47162 * 59.99971 * 14 12 10 34 34 H 1.08998 * 109.47142 * 179.97438 * 14 12 10 35 35 H 1.08994 * 109.47016 * 299.99827 * 14 12 10 36 36 H 1.09001 * 109.47482 * 299.99788 * 16 15 12 37 37 H 1.08992 * 109.47431 * 59.99961 * 16 15 12 38 38 H 0.97001 * 119.99828 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2933 2.3746 -0.0005 5 6 1.9224 3.6056 -0.0011 6 6 3.3031 3.6807 0.0043 7 6 4.0615 2.5253 -0.0004 8 6 3.4372 1.2864 0.0000 9 7 4.2040 0.1136 0.0010 10 6 5.4593 0.1295 0.4912 11 8 5.8903 1.1311 1.0224 12 6 6.3275 -1.0972 0.3794 13 1 6.1771 -1.5611 -0.5954 14 6 5.9510 -2.0906 1.4805 15 16 8.0691 -0.6240 0.5615 16 6 8.9493 -2.1791 0.2491 17 6 10.4339 -1.9482 0.3662 18 1 10.8104 -0.9644 0.6043 19 6 11.3118 -2.9928 0.1683 20 7 12.6074 -2.7913 0.2700 21 14 10.6608 -4.6945 -0.2442 22 1 10.5475 -4.8373 -1.7179 23 1 11.5941 -5.7226 0.2824 24 1 9.3234 -4.8764 0.3752 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.2147 2.3195 -0.0005 29 1 1.3339 4.5112 -0.0019 30 1 3.7902 4.6446 0.0085 31 1 5.1397 2.5868 0.0000 32 1 3.8311 -0.7098 -0.3511 33 1 4.9045 -2.3750 1.3709 34 1 6.5787 -2.9780 1.3993 35 1 6.1014 -1.6267 2.4552 36 1 8.6393 -2.9254 0.9806 37 1 8.7145 -2.5343 -0.7542 38 1 13.2250 -3.5262 0.1304 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058256425.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:09 Heat of formation + Delta-G solvation = -65.544606 kcal Electronic energy + Delta-G solvation = -20700.686578 eV Core-core repulsion = 17441.152115 eV Total energy + Delta-G solvation = -3259.534463 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.90394 -40.42331 -38.21696 -35.93193 -35.21397 -34.32824 -31.44044 -31.15541 -30.51091 -28.06855 -25.97003 -24.73598 -23.76725 -23.14063 -21.43719 -19.62875 -19.08614 -18.38851 -18.27274 -17.25352 -16.87799 -16.58195 -16.27577 -16.17700 -15.81171 -15.36917 -15.34253 -14.92566 -14.80033 -14.48226 -14.31134 -13.95942 -13.62598 -13.33669 -13.02700 -12.96753 -12.63189 -12.58677 -12.18717 -12.13035 -12.06736 -11.99748 -11.73047 -11.60027 -10.88920 -10.84485 -10.58042 -9.60713 -8.83309 -8.55616 -8.36323 -6.46869 0.19199 0.39995 0.63784 1.35069 1.38096 1.45618 1.48894 1.87182 1.96050 2.30272 2.30873 2.80863 2.96626 3.47906 3.82198 3.87252 3.96458 4.00454 4.26681 4.39931 4.45069 4.46095 4.53233 4.57357 4.62172 4.67481 4.77141 4.78432 4.80125 5.09167 5.11130 5.28282 5.35136 5.43688 5.58449 5.80485 6.07765 6.26842 6.38956 6.57531 6.97120 7.15366 8.80027 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.029958 B = 0.003196 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.415408 B = 8759.279240 C = 9493.300013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.333 6.333 3 C 0.095 3.905 4 C -0.186 4.186 5 C -0.095 4.095 6 C -0.143 4.143 7 C -0.121 4.121 8 C 0.098 3.902 9 N -0.646 5.646 10 C 0.538 3.462 11 O -0.537 6.537 12 C -0.087 4.087 13 H 0.131 0.869 14 C -0.137 4.137 15 S -0.257 6.257 16 C 0.045 3.955 17 C -0.532 4.532 18 H 0.030 0.970 19 C 0.017 3.983 20 N -0.943 5.943 21 Si 0.957 3.043 22 H -0.260 1.260 23 H -0.279 1.279 24 H -0.238 1.238 25 H 0.118 0.882 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.163 0.837 29 H 0.158 0.842 30 H 0.140 0.860 31 H 0.124 0.876 32 H 0.426 0.574 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.045 0.955 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.705 3.963 -2.807 32.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.247 6.247 3 C 0.047 3.953 4 C -0.205 4.205 5 C -0.113 4.113 6 C -0.161 4.161 7 C -0.141 4.141 8 C 0.004 3.996 9 N -0.292 5.292 10 C 0.324 3.676 11 O -0.413 6.413 12 C -0.219 4.219 13 H 0.149 0.851 14 C -0.195 4.195 15 S -0.030 6.030 16 C -0.102 4.102 17 C -0.571 4.571 18 H 0.049 0.951 19 C -0.182 4.182 20 N -0.582 5.582 21 Si 0.778 3.222 22 H -0.185 1.185 23 H -0.204 1.204 24 H -0.161 1.161 25 H 0.136 0.864 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.180 0.820 29 H 0.175 0.825 30 H 0.158 0.842 31 H 0.142 0.858 32 H 0.265 0.735 33 H 0.118 0.882 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -30.690 5.350 -2.208 31.231 hybrid contribution 0.037 -1.818 -0.532 1.895 sum -30.653 3.531 -2.740 30.977 Atomic orbital electron populations 1.23361 0.75958 1.05657 1.02442 1.85985 1.23777 1.25905 1.89047 1.18735 0.89592 0.86282 1.00671 1.21428 1.01295 0.91061 1.06745 1.21316 0.94015 0.98354 0.97646 1.21244 0.94663 0.98012 1.02227 1.21313 1.01200 0.91290 1.00333 1.17334 0.87876 0.86983 1.07441 1.43102 1.13020 1.12116 1.60953 1.20065 0.81828 0.88709 0.76971 1.90689 1.73236 1.34731 1.42633 1.23274 0.94655 0.97768 1.06160 0.85133 1.21980 1.03713 0.97525 0.96322 1.87556 0.99975 1.21408 1.94060 1.21302 0.96661 0.92581 0.99701 1.20649 0.89517 0.96796 1.50105 0.95139 1.25966 0.94560 1.03942 0.93770 1.70035 1.03426 1.34552 1.50145 0.85573 0.79762 0.77190 0.79661 1.18504 1.20422 1.16093 0.86390 0.91692 0.91270 0.82002 0.82474 0.84250 0.85784 0.73519 0.88246 0.90699 0.92214 0.93149 0.93662 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.27 16 2 O -0.33 -5.54 9.91 -93.20 -0.92 -6.46 16 3 C 0.09 1.90 6.70 22.60 0.15 2.05 16 4 C -0.19 -2.86 9.04 22.35 0.20 -2.66 16 5 C -0.09 -1.49 10.04 22.28 0.22 -1.27 16 6 C -0.14 -3.02 10.04 22.27 0.22 -2.80 16 7 C -0.12 -3.37 8.72 22.38 0.20 -3.18 16 8 C 0.10 2.53 6.45 38.19 0.25 2.78 16 9 N -0.65 -16.14 5.29 -303.14 -1.60 -17.74 16 10 C 0.54 17.15 6.81 87.66 0.60 17.75 16 11 O -0.54 -21.52 13.21 -3.08 -0.04 -21.56 16 12 C -0.09 -2.69 3.18 29.85 0.09 -2.59 16 13 H 0.13 3.31 8.14 -2.39 -0.02 3.29 16 14 C -0.14 -3.53 9.08 71.98 0.65 -2.88 16 15 S -0.26 -11.47 20.32 -56.49 -1.15 -12.61 16 16 C 0.05 2.16 4.46 71.24 0.32 2.48 16 17 C -0.53 -31.58 9.68 25.60 0.25 -31.33 16 18 H 0.03 2.07 7.96 -2.91 -0.02 2.05 16 19 C 0.02 1.00 5.47 84.66 0.46 1.47 16 20 N -0.94 -59.09 13.96 21.45 0.30 -58.79 16 21 Si 0.96 42.10 27.47 68.60 1.88 43.98 16 22 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 23 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 24 H -0.24 -9.32 6.54 99.48 0.65 -8.67 16 25 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.06 0.39 7.66 -2.39 -0.02 0.37 16 27 H 0.07 0.36 7.66 -2.39 -0.02 0.34 16 28 H 0.16 1.36 6.30 -2.91 -0.02 1.35 16 29 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16 30 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 31 H 0.12 4.20 5.79 -2.91 -0.02 4.18 16 32 H 0.43 8.00 8.35 -92.71 -0.77 7.22 16 33 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.07 1.96 6.92 -2.39 -0.02 1.95 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.05 2.24 6.20 -2.39 -0.01 2.22 16 37 H 0.05 1.99 7.57 -2.39 -0.02 1.97 16 38 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -78.06 331.79 3.45 -74.61 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.25 Total: 17.48 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: 4.73 Total: -18.91 kcal Atomic # 7 Polarization: -75.23 SS G_CDS: -1.30 Total: -76.53 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.96 Total: -28.03 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 1.88 Total: 43.98 kcal Atomic # 16 Polarization: -11.47 SS G_CDS: -1.15 Total: -12.61 kcal Total: -78.06 3.45 -74.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058256425.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.067 kcal (2) G-P(sol) polarization free energy of solvation -78.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds