Wall clock time and date at job start Tue Mar 31 2020 07:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81410 * 1 3 3 C 1.81405 * 102.99728 * 2 1 4 4 C 1.53004 * 109.46593 * 180.02562 * 3 2 1 5 5 H 1.08991 * 109.47435 * 54.99895 * 4 3 2 6 6 C 1.52997 * 109.46857 * 294.99772 * 4 3 2 7 7 C 1.50702 * 109.46736 * 175.00408 * 4 3 2 8 8 O 1.21293 * 119.99978 * 359.97438 * 7 4 3 9 9 N 1.34769 * 119.99930 * 180.02562 * 7 4 3 10 10 C 1.39997 * 120.00178 * 175.49720 * 9 7 4 11 11 C 1.38918 * 120.00157 * 214.84685 * 10 9 7 12 12 C 1.38000 * 119.99885 * 179.76576 * 11 10 9 13 13 C 1.38914 * 120.00230 * 0.48160 * 12 11 10 14 14 O 1.35773 * 120.00266 * 179.74662 * 13 12 11 15 15 C 1.34809 * 117.00263 * 185.36194 * 14 13 12 16 16 H 1.08003 * 119.99729 * 354.96524 * 15 14 13 17 17 C 1.38636 * 120.00120 * 174.96469 * 15 14 13 18 18 N 1.31574 * 119.99756 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99992 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46882 * 60.00033 * 19 17 15 21 21 H 1.48494 * 109.46971 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46912 * 300.00153 * 19 17 15 23 23 C 1.38906 * 119.99842 * 359.77111 * 13 12 11 24 24 C 1.38004 * 120.00439 * 359.97438 * 23 13 12 25 25 H 1.08998 * 109.47168 * 60.00055 * 1 2 3 26 26 H 1.08997 * 109.46883 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46771 * 299.99586 * 1 2 3 28 28 H 1.08993 * 109.46912 * 60.00071 * 3 2 1 29 29 H 1.09006 * 109.46872 * 300.00108 * 3 2 1 30 30 H 1.08997 * 109.47567 * 300.00423 * 6 4 3 31 31 H 1.09007 * 109.47331 * 180.02562 * 6 4 3 32 32 H 1.09000 * 109.47217 * 60.00512 * 6 4 3 33 33 H 0.96998 * 120.00380 * 355.49404 * 9 7 4 34 34 H 1.08002 * 120.00240 * 359.97438 * 11 10 9 35 35 H 1.08002 * 120.00360 * 180.21185 * 12 11 10 36 36 H 0.96998 * 119.99193 * 179.97438 * 18 17 15 37 37 H 1.08003 * 119.99955 * 179.97438 * 23 13 12 38 38 H 1.07996 * 120.00081 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7424 1.9399 -0.0006 5 1 4.1695 1.3953 -0.8426 6 6 4.3183 1.3916 1.3064 7 6 4.0819 3.4030 -0.1244 8 8 3.1952 4.2267 -0.2047 9 7 5.3708 3.7961 -0.1469 10 6 5.6882 5.1434 -0.3563 11 6 6.8287 5.4852 -1.0721 12 6 7.1389 6.8133 -1.2827 13 6 6.3162 7.8085 -0.7704 14 8 6.6242 9.1152 -0.9731 15 6 5.8485 10.0296 -0.3572 16 1 4.9774 9.7131 0.1974 17 6 6.1688 11.3762 -0.4357 18 7 7.2302 11.7616 -1.1110 19 14 5.0942 12.6432 0.4184 20 1 5.0658 12.3656 1.8769 21 1 5.6476 14.0009 0.1830 22 1 3.7147 12.5701 -0.1264 23 6 5.1787 7.4667 -0.0502 24 6 4.8655 6.1386 0.1560 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8032 2.2371 0.8899 29 1 1.8031 2.2371 -0.8900 30 1 3.8912 1.9362 2.1485 31 1 5.4014 1.5148 1.3062 32 1 4.0727 0.3334 1.3960 33 1 6.0786 3.1455 -0.0179 34 1 7.4708 4.7116 -1.4667 35 1 8.0237 7.0791 -1.8420 36 1 7.4540 12.7038 -1.1661 37 1 4.5392 8.2405 0.3485 38 1 3.9813 5.8730 0.7163 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066755967.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:56 Heat of formation + Delta-G solvation = -42.705049 kcal Electronic energy + Delta-G solvation = -20532.318187 eV Core-core repulsion = 17273.774121 eV Total energy + Delta-G solvation = -3258.544066 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.34879 -38.75929 -36.66227 -34.76038 -33.92284 -32.17526 -30.21890 -29.40175 -28.16966 -27.31491 -25.37603 -23.89845 -22.27526 -21.17645 -19.76702 -18.13832 -17.67117 -17.19742 -16.47153 -16.07270 -15.64967 -14.78162 -14.59374 -14.50032 -14.12489 -14.02726 -13.66879 -13.62817 -13.54980 -13.15026 -12.89254 -12.66462 -12.50623 -12.30721 -11.80189 -11.67612 -11.64861 -11.51753 -11.42329 -11.01231 -10.76621 -10.45699 -10.31464 -9.70632 -9.67863 -9.18126 -8.70585 -8.22091 -7.98546 -6.95692 -6.45016 -4.02695 1.31155 2.04862 2.19739 2.24764 2.79787 3.14477 3.15546 3.17990 3.31070 3.97507 4.28509 4.52200 4.54869 4.68030 4.81128 4.81903 5.01289 5.09534 5.25005 5.25442 5.34692 5.37141 5.50348 5.65012 5.67848 5.73927 5.87435 6.12364 6.16561 6.32277 6.71200 6.83856 6.99097 7.07657 7.29002 7.42885 7.64950 7.76760 8.00007 8.31210 9.00624 9.69794 10.72791 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.029036 B = 0.002742 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.094691 B =10209.784614 C =10902.733054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.264 6.264 3 C -0.065 4.065 4 C -0.093 4.093 5 H 0.106 0.894 6 C -0.147 4.147 7 C 0.514 3.486 8 O -0.527 6.527 9 N -0.656 5.656 10 C 0.031 3.969 11 C -0.092 4.092 12 C -0.178 4.178 13 C 0.147 3.853 14 O -0.176 6.176 15 C -0.391 4.391 16 H 0.092 0.908 17 C 0.039 3.961 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.221 4.221 24 C -0.063 4.063 25 H 0.077 0.923 26 H 0.100 0.900 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.402 0.598 34 H 0.115 0.885 35 H 0.122 0.878 36 H 0.271 0.729 37 H 0.130 0.870 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.319 -21.576 3.617 23.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.039 6.039 3 C -0.213 4.213 4 C -0.115 4.115 5 H 0.124 0.876 6 C -0.205 4.205 7 C 0.299 3.701 8 O -0.403 6.403 9 N -0.301 5.301 10 C -0.061 4.061 11 C -0.112 4.112 12 C -0.198 4.198 13 C 0.093 3.907 14 O -0.079 6.079 15 C -0.467 4.467 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.498 5.498 19 Si 0.765 3.235 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.241 4.241 24 C -0.083 4.083 25 H 0.096 0.904 26 H 0.119 0.881 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.237 0.763 34 H 0.133 0.867 35 H 0.140 0.860 36 H 0.080 0.920 37 H 0.148 0.852 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.023 -21.541 3.356 22.904 hybrid contribution -1.086 1.330 0.424 1.768 sum -8.109 -20.211 3.780 22.103 Atomic orbital electron populations 1.23382 0.93967 1.06412 1.05195 1.86665 1.07694 1.11395 1.98108 1.23220 0.97843 0.93574 1.06676 1.21023 0.94974 0.93723 1.01786 0.87572 1.21870 1.00925 1.02435 0.95269 1.20442 0.82753 0.90328 0.76606 1.90714 1.46910 1.54119 1.48529 1.43165 1.07454 1.08283 1.71158 1.17263 0.99704 0.82202 1.06946 1.20358 0.96816 0.95538 0.98491 1.19996 1.01785 0.90503 1.07533 1.19416 0.92427 0.85974 0.92916 1.83970 1.52023 1.10010 1.61906 1.21290 1.07846 0.85779 1.31832 0.89076 1.25285 0.97041 0.97007 0.97157 1.70037 1.24420 1.17037 1.38258 0.85781 0.79326 0.78920 0.79431 1.19476 1.20270 1.19469 1.21106 1.00039 0.96081 1.06890 1.20838 0.98517 0.91419 0.97561 0.90368 0.88096 0.90377 0.89223 0.88987 0.91711 0.91737 0.90346 0.76314 0.86706 0.86028 0.91964 0.85223 0.85782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 10.76 101.05 1.09 0.29 16 2 S -0.26 -2.33 21.19 -107.50 -2.28 -4.61 16 3 C -0.06 -0.64 4.73 37.16 0.18 -0.46 16 4 C -0.09 -0.88 2.73 -91.77 -0.25 -1.13 16 5 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 6 C -0.15 -1.14 8.91 37.16 0.33 -0.81 16 7 C 0.51 6.97 7.00 -10.99 -0.08 6.89 16 8 O -0.53 -9.30 13.36 5.55 0.07 -9.22 16 9 N -0.66 -8.69 5.26 -9.82 -0.05 -8.74 16 10 C 0.03 0.55 6.30 -83.62 -0.53 0.02 16 11 C -0.09 -1.59 9.96 -39.42 -0.39 -1.98 16 12 C -0.18 -3.70 9.98 -39.42 -0.39 -4.09 16 13 C 0.15 3.57 6.65 -39.08 -0.26 3.31 16 14 O -0.18 -5.03 9.75 0.04 0.00 -5.03 16 15 C -0.39 -11.02 9.48 30.88 0.29 -10.72 16 16 H 0.09 2.39 5.20 -52.48 -0.27 2.12 16 17 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 18 N -0.86 -25.32 13.67 55.48 0.76 -24.56 16 19 Si 0.94 20.69 29.55 -169.99 -5.02 15.67 16 20 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 C -0.22 -5.00 9.16 -39.42 -0.36 -5.36 16 24 C -0.06 -1.28 8.69 -39.42 -0.34 -1.62 16 25 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 26 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.09 1.01 7.96 -51.92 -0.41 0.59 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.41 7.47 -51.93 -0.39 0.03 16 32 H 0.08 0.57 7.13 -51.93 -0.37 0.20 16 33 H 0.40 3.82 8.12 -40.82 -0.33 3.49 16 34 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 36 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.13 2.95 5.63 -52.48 -0.30 2.66 16 38 H 0.12 2.46 6.23 -52.49 -0.33 2.14 16 LS Contribution 334.96 15.07 5.05 5.05 Total: -1.00 -32.60 334.96 -7.20 -39.80 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -4.91 Total: 6.33 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -0.81 Total: -14.69 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.71 Total: -33.30 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: 0.07 Total: -14.25 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: -2.33 SS G_CDS: -2.28 Total: -4.61 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.60 -7.20 -39.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066755967.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.903 kcal (2) G-P(sol) polarization free energy of solvation -32.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds