Wall clock time and date at job start Tue Mar 31 2020 07:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81410 * 1 3 3 C 1.81405 * 102.99728 * 2 1 4 4 C 1.53004 * 109.46593 * 180.02562 * 3 2 1 5 5 H 1.08991 * 109.47435 * 54.99895 * 4 3 2 6 6 C 1.52997 * 109.46857 * 294.99772 * 4 3 2 7 7 C 1.50702 * 109.46736 * 175.00408 * 4 3 2 8 8 O 1.21293 * 119.99978 * 359.97438 * 7 4 3 9 9 N 1.34769 * 119.99930 * 180.02562 * 7 4 3 10 10 C 1.39997 * 120.00178 * 175.49720 * 9 7 4 11 11 C 1.38918 * 120.00157 * 214.84685 * 10 9 7 12 12 C 1.38000 * 119.99885 * 179.76576 * 11 10 9 13 13 C 1.38914 * 120.00230 * 0.48160 * 12 11 10 14 14 O 1.35773 * 120.00266 * 179.74662 * 13 12 11 15 15 C 1.34809 * 117.00263 * 185.36194 * 14 13 12 16 16 H 1.08003 * 119.99729 * 354.96524 * 15 14 13 17 17 C 1.38636 * 120.00120 * 174.96469 * 15 14 13 18 18 N 1.31574 * 119.99756 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99992 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46882 * 60.00033 * 19 17 15 21 21 H 1.48494 * 109.46971 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46912 * 300.00153 * 19 17 15 23 23 C 1.38906 * 119.99842 * 359.77111 * 13 12 11 24 24 C 1.38004 * 120.00439 * 359.97438 * 23 13 12 25 25 H 1.08998 * 109.47168 * 60.00055 * 1 2 3 26 26 H 1.08997 * 109.46883 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46771 * 299.99586 * 1 2 3 28 28 H 1.08993 * 109.46912 * 60.00071 * 3 2 1 29 29 H 1.09006 * 109.46872 * 300.00108 * 3 2 1 30 30 H 1.08997 * 109.47567 * 300.00423 * 6 4 3 31 31 H 1.09007 * 109.47331 * 180.02562 * 6 4 3 32 32 H 1.09000 * 109.47217 * 60.00512 * 6 4 3 33 33 H 0.96998 * 120.00380 * 355.49404 * 9 7 4 34 34 H 1.08002 * 120.00240 * 359.97438 * 11 10 9 35 35 H 1.08002 * 120.00360 * 180.21185 * 12 11 10 36 36 H 0.96998 * 119.99193 * 179.97438 * 18 17 15 37 37 H 1.08003 * 119.99955 * 179.97438 * 23 13 12 38 38 H 1.07996 * 120.00081 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7424 1.9399 -0.0006 5 1 4.1695 1.3953 -0.8426 6 6 4.3183 1.3916 1.3064 7 6 4.0819 3.4030 -0.1244 8 8 3.1952 4.2267 -0.2047 9 7 5.3708 3.7961 -0.1469 10 6 5.6882 5.1434 -0.3563 11 6 6.8287 5.4852 -1.0721 12 6 7.1389 6.8133 -1.2827 13 6 6.3162 7.8085 -0.7704 14 8 6.6242 9.1152 -0.9731 15 6 5.8485 10.0296 -0.3572 16 1 4.9774 9.7131 0.1974 17 6 6.1688 11.3762 -0.4357 18 7 7.2302 11.7616 -1.1110 19 14 5.0942 12.6432 0.4184 20 1 5.0658 12.3656 1.8769 21 1 5.6476 14.0009 0.1830 22 1 3.7147 12.5701 -0.1264 23 6 5.1787 7.4667 -0.0502 24 6 4.8655 6.1386 0.1560 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8032 2.2371 0.8899 29 1 1.8031 2.2371 -0.8900 30 1 3.8912 1.9362 2.1485 31 1 5.4014 1.5148 1.3062 32 1 4.0727 0.3334 1.3960 33 1 6.0786 3.1455 -0.0179 34 1 7.4708 4.7116 -1.4667 35 1 8.0237 7.0791 -1.8420 36 1 7.4540 12.7038 -1.1661 37 1 4.5392 8.2405 0.3485 38 1 3.9813 5.8730 0.7163 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066755967.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:56 Heat of formation + Delta-G solvation = -63.583355 kcal Electronic energy + Delta-G solvation = -20533.223538 eV Core-core repulsion = 17273.774121 eV Total energy + Delta-G solvation = -3259.449417 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.63925 -40.44174 -38.29216 -35.73583 -35.30069 -34.14573 -31.87178 -29.99995 -29.63011 -28.07731 -27.32422 -25.04376 -23.88140 -22.67750 -20.94993 -19.92071 -19.18077 -18.36437 -18.08279 -16.94646 -16.66291 -16.30661 -16.06214 -15.82510 -15.50760 -15.25017 -15.19003 -14.73401 -14.58635 -14.32074 -14.12559 -13.89572 -13.57763 -13.32183 -13.30029 -13.17592 -12.98345 -12.70082 -12.47432 -12.36027 -12.21454 -12.15626 -11.42983 -11.13573 -10.99830 -10.74347 -10.52271 -9.84907 -8.66754 -8.62745 -8.47781 -6.14693 0.49086 0.54035 0.63346 1.34103 1.42865 1.49906 1.58844 1.61091 2.15787 2.18829 2.80830 3.13878 3.48594 3.50705 3.73491 3.80488 4.09458 4.11368 4.25847 4.31447 4.35435 4.47223 4.50325 4.63503 4.66818 4.75137 4.87936 4.89271 4.97009 5.06779 5.12197 5.28829 5.33741 5.43874 5.57989 5.69119 6.01136 6.14995 6.50481 6.96672 7.19197 7.75986 8.74685 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.029036 B = 0.002742 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.094691 B =10209.784614 C =10902.733054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.270 6.270 3 C -0.064 4.064 4 C -0.080 4.080 5 H 0.128 0.872 6 C -0.144 4.144 7 C 0.514 3.486 8 O -0.568 6.568 9 N -0.645 5.645 10 C 0.060 3.940 11 C -0.076 4.076 12 C -0.181 4.181 13 C 0.106 3.894 14 O -0.227 6.227 15 C -0.415 4.415 16 H 0.097 0.903 17 C -0.020 4.020 18 N -0.917 5.917 19 Si 1.016 2.984 20 H -0.258 1.258 21 H -0.268 1.268 22 H -0.260 1.260 23 C -0.230 4.230 24 C -0.076 4.076 25 H 0.080 0.920 26 H 0.117 0.883 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.426 0.574 34 H 0.168 0.832 35 H 0.129 0.871 36 H 0.273 0.727 37 H 0.116 0.884 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.784 -24.919 4.226 26.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.045 6.045 3 C -0.213 4.213 4 C -0.102 4.102 5 H 0.146 0.854 6 C -0.201 4.201 7 C 0.301 3.699 8 O -0.447 6.447 9 N -0.291 5.291 10 C -0.034 4.034 11 C -0.096 4.096 12 C -0.200 4.200 13 C 0.056 3.944 14 O -0.133 6.133 15 C -0.491 4.491 16 H 0.114 0.886 17 C -0.218 4.218 18 N -0.555 5.555 19 Si 0.835 3.165 20 H -0.182 1.182 21 H -0.193 1.193 22 H -0.185 1.185 23 C -0.250 4.250 24 C -0.096 4.096 25 H 0.099 0.901 26 H 0.135 0.865 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.266 0.734 34 H 0.185 0.815 35 H 0.147 0.853 36 H 0.082 0.918 37 H 0.134 0.866 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.481 -24.987 3.979 26.385 hybrid contribution -1.027 1.922 0.229 2.191 sum -8.508 -23.064 4.208 24.941 Atomic orbital electron populations 1.23484 0.92096 1.07600 1.05602 1.86627 1.09856 1.09870 1.98105 1.23139 0.98133 0.94517 1.05525 1.21015 0.94928 0.90513 1.03743 0.85417 1.21882 1.02003 1.02648 0.93586 1.21224 0.82006 0.91818 0.74822 1.90714 1.48169 1.55734 1.50080 1.43113 1.08494 1.06769 1.70764 1.17409 0.98252 0.83870 1.03831 1.20796 0.96852 0.95119 0.96807 1.20341 1.01470 0.91330 1.06902 1.19953 0.94063 0.85520 0.94896 1.83933 1.53520 1.11634 1.64244 1.21726 1.08391 0.86610 1.32386 0.88584 1.26528 0.98565 0.98891 0.97799 1.70171 1.26894 1.17605 1.40866 0.84692 0.77408 0.75881 0.78526 1.18247 1.19277 1.18489 1.21101 0.99690 0.97097 1.07129 1.20922 0.99334 0.91014 0.98312 0.90120 0.86491 0.89891 0.90141 0.90483 0.92590 0.89741 0.89410 0.73433 0.81461 0.85329 0.91754 0.86635 0.85647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 10.76 113.37 1.22 -0.09 16 2 S -0.27 -4.11 21.19 -56.49 -1.20 -5.31 16 3 C -0.06 -1.16 4.73 71.98 0.34 -0.82 16 4 C -0.08 -1.27 2.73 -11.54 -0.03 -1.30 16 5 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 6 C -0.14 -1.71 8.91 71.98 0.64 -1.07 16 7 C 0.51 12.57 7.00 87.66 0.61 13.18 16 8 O -0.57 -19.41 13.36 -3.07 -0.04 -19.45 16 9 N -0.64 -14.58 5.26 -303.38 -1.60 -16.18 16 10 C 0.06 1.95 6.30 38.16 0.24 2.19 16 11 C -0.08 -2.38 9.96 22.38 0.22 -2.16 16 12 C -0.18 -7.40 9.98 22.38 0.22 -7.18 16 13 C 0.11 5.37 6.65 22.59 0.15 5.52 16 14 O -0.23 -13.76 9.75 -22.78 -0.22 -13.98 16 15 C -0.41 -24.69 9.48 67.91 0.64 -24.04 16 16 H 0.10 5.35 5.20 -2.91 -0.02 5.33 16 17 C -0.02 -1.15 5.49 84.83 0.47 -0.69 16 18 N -0.92 -56.52 13.67 21.61 0.30 -56.22 16 19 Si 1.02 43.72 29.55 68.60 2.03 45.75 16 20 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 21 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 22 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 23 C -0.23 -10.78 9.16 22.37 0.20 -10.58 16 24 C -0.08 -3.02 8.69 22.38 0.19 -2.82 16 25 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.08 1.60 7.96 -2.39 -0.02 1.59 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 0.68 7.47 -2.38 -0.02 0.66 16 32 H 0.09 0.95 7.13 -2.39 -0.02 0.93 16 33 H 0.43 5.82 8.12 -92.71 -0.75 5.07 16 34 H 0.17 3.54 8.06 -2.91 -0.02 3.52 16 35 H 0.13 5.02 8.06 -2.91 -0.02 5.00 16 36 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 37 H 0.12 5.60 5.63 -2.91 -0.02 5.58 16 38 H 0.13 4.97 6.23 -2.91 -0.02 4.95 16 Total: -1.00 -76.26 334.96 4.73 -71.53 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: 0.33 Total: 23.72 kcal Atomic # 6 Polarization: -34.99 SS G_CDS: 5.13 Total: -29.86 kcal Atomic # 7 Polarization: -71.10 SS G_CDS: -1.30 Total: -72.40 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -0.26 Total: -33.43 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -4.11 SS G_CDS: -1.20 Total: -5.31 kcal Total: -76.26 4.73 -71.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066755967.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.946 kcal (2) G-P(sol) polarization free energy of solvation -76.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds