Wall clock time and date at job start Tue Mar 31 2020 07:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81394 * 103.00348 * 2 1 4 4 C 1.52993 * 109.47321 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47086 * 304.99699 * 4 3 2 6 6 C 1.53003 * 109.47224 * 64.99672 * 4 3 2 7 7 C 1.50699 * 109.47317 * 185.00087 * 4 3 2 8 8 O 1.21290 * 120.00258 * 359.97438 * 7 4 3 9 9 N 1.34781 * 119.99945 * 179.97438 * 7 4 3 10 10 C 1.39994 * 119.99866 * 175.48179 * 9 7 4 11 11 C 1.38922 * 120.00029 * 214.84941 * 10 9 7 12 12 C 1.38002 * 119.99345 * 179.79274 * 11 10 9 13 13 C 1.38902 * 120.00673 * 0.45966 * 12 11 10 14 14 O 1.35774 * 120.00265 * 179.76835 * 13 12 11 15 15 C 1.34814 * 117.00183 * 185.36968 * 14 13 12 16 16 H 1.07995 * 120.00097 * 354.96224 * 15 14 13 17 17 C 1.38636 * 120.00184 * 174.96331 * 15 14 13 18 18 N 1.31573 * 119.99799 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00237 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46952 * 89.99960 * 19 17 15 21 21 H 1.48495 * 109.47275 * 209.99964 * 19 17 15 22 22 H 1.48503 * 109.46991 * 330.00100 * 19 17 15 23 23 C 1.38913 * 119.99922 * 359.79395 * 13 12 11 24 24 C 1.37997 * 120.00442 * 359.97438 * 23 13 12 25 25 H 1.09004 * 109.47121 * 300.00496 * 1 2 3 26 26 H 1.09001 * 109.47031 * 60.00066 * 1 2 3 27 27 H 1.08995 * 109.47676 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47167 * 59.99741 * 3 2 1 29 29 H 1.09008 * 109.47106 * 300.00144 * 3 2 1 30 30 H 1.09000 * 109.46845 * 180.02562 * 6 4 3 31 31 H 1.08996 * 109.46948 * 60.00418 * 6 4 3 32 32 H 1.08997 * 109.47326 * 299.99878 * 6 4 3 33 33 H 0.97001 * 119.99755 * 355.48175 * 9 7 4 34 34 H 1.07998 * 120.00479 * 0.02562 * 11 10 9 35 35 H 1.08006 * 119.99510 * 180.22951 * 12 11 10 36 36 H 0.97004 * 120.00325 * 179.97438 * 18 17 15 37 37 H 1.08006 * 119.99474 * 179.97438 * 23 13 12 38 38 H 1.07997 * 120.00028 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7674 0.0000 4 6 3.7424 1.9398 -0.0006 5 1 4.1702 1.3950 0.8410 6 6 4.3173 1.3916 -1.3083 7 6 4.0821 3.4028 0.1232 8 8 3.1956 4.2266 0.2036 9 7 5.3712 3.7958 0.1447 10 6 5.6869 5.1595 0.1643 11 6 6.8145 5.6211 -0.5032 12 6 7.1232 6.9660 -0.4874 13 6 6.3121 7.8569 0.2038 14 8 6.6186 9.1794 0.2232 15 6 5.8561 9.9730 1.0019 16 1 4.9951 9.5646 1.5100 17 6 6.1773 11.3135 1.1504 18 7 7.2265 11.8110 0.5317 19 14 5.1204 12.4133 2.2287 20 1 5.6408 12.3905 3.6194 21 1 5.1606 13.8033 1.7079 22 1 3.7197 11.9202 2.2162 23 6 5.1875 7.3946 0.8756 24 6 4.8759 6.0504 0.8559 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8032 2.2371 0.8899 29 1 1.8032 2.2371 -0.8900 30 1 5.4004 1.5140 -1.3085 31 1 3.8895 1.9364 -2.1498 32 1 4.0716 0.3334 -1.3978 33 1 6.0801 3.1337 0.1465 34 1 7.4473 4.9280 -1.0376 35 1 7.9978 7.3254 -1.0094 36 1 7.4511 12.7490 0.6353 37 1 4.5571 8.0873 1.4134 38 1 4.0018 5.6910 1.3786 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066755969.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:59 Heat of formation + Delta-G solvation = -42.809074 kcal Electronic energy + Delta-G solvation = -20536.250062 eV Core-core repulsion = 17277.701485 eV Total energy + Delta-G solvation = -3258.548576 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.34627 -38.75913 -36.66223 -34.75495 -33.92369 -32.17543 -30.21841 -29.40116 -28.16580 -27.31368 -25.37444 -23.90585 -22.25562 -21.16614 -19.82404 -18.13987 -17.65420 -17.15657 -16.44507 -16.06873 -15.67546 -14.82917 -14.64236 -14.48696 -14.08366 -13.99475 -13.65313 -13.62984 -13.53109 -13.17508 -12.90065 -12.71259 -12.46073 -12.30660 -11.80200 -11.69516 -11.55475 -11.52751 -11.46830 -11.01992 -10.76472 -10.43886 -10.31490 -9.70729 -9.67514 -9.18347 -8.70735 -8.22163 -7.98531 -6.95808 -6.45214 -4.02826 1.31093 2.05302 2.19828 2.24418 2.78666 3.14006 3.14844 3.19545 3.31802 3.97390 4.28650 4.50459 4.57700 4.68668 4.81080 4.81850 5.01597 5.09489 5.24375 5.25764 5.35710 5.37134 5.51563 5.65650 5.68048 5.73783 5.89123 6.12339 6.16360 6.32283 6.71124 6.83870 6.99021 7.07789 7.29195 7.42857 7.64903 7.76684 7.99917 8.31199 9.00573 9.69768 10.72677 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.029124 B = 0.002758 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.160096 B =10149.186998 C =10980.962938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.264 6.264 3 C -0.065 4.065 4 C -0.093 4.093 5 H 0.105 0.895 6 C -0.146 4.146 7 C 0.514 3.486 8 O -0.527 6.527 9 N -0.656 5.656 10 C 0.031 3.969 11 C -0.092 4.092 12 C -0.178 4.178 13 C 0.147 3.853 14 O -0.176 6.176 15 C -0.391 4.391 16 H 0.092 0.908 17 C 0.039 3.961 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.267 1.267 23 C -0.221 4.221 24 C -0.064 4.064 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.402 0.598 34 H 0.115 0.885 35 H 0.122 0.878 36 H 0.270 0.730 37 H 0.130 0.870 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.306 -21.825 -1.010 23.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.038 6.038 3 C -0.213 4.213 4 C -0.115 4.115 5 H 0.123 0.877 6 C -0.204 4.204 7 C 0.299 3.701 8 O -0.403 6.403 9 N -0.300 5.300 10 C -0.061 4.061 11 C -0.112 4.112 12 C -0.198 4.198 13 C 0.093 3.907 14 O -0.079 6.079 15 C -0.467 4.467 16 H 0.110 0.890 17 C -0.165 4.165 18 N -0.498 5.498 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.202 1.202 22 H -0.191 1.191 23 C -0.241 4.241 24 C -0.084 4.084 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.119 0.881 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.237 0.763 34 H 0.133 0.867 35 H 0.140 0.860 36 H 0.080 0.920 37 H 0.148 0.852 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.022 -21.761 -1.108 22.893 hybrid contribution -1.067 1.251 0.560 1.737 sum -8.088 -20.510 -0.547 22.054 Atomic orbital electron populations 1.23382 0.93975 1.06411 1.05196 1.86662 1.07686 1.11393 1.98108 1.23216 0.97844 0.93573 1.06678 1.21012 0.94971 0.93721 1.01799 0.87659 1.21855 1.00974 1.02305 0.95240 1.20447 0.82739 0.90368 0.76585 1.90713 1.46946 1.54138 1.48470 1.43161 1.07377 1.06565 1.72943 1.17263 1.00048 0.82478 1.06291 1.20357 0.96961 0.94869 0.99000 1.19995 1.01995 0.91369 1.06464 1.19415 0.92429 0.85508 0.93378 1.83972 1.52860 1.12162 1.58950 1.21338 1.08974 0.90315 1.26065 0.89023 1.25288 0.97027 0.96463 0.97739 1.70045 1.24912 1.14569 1.40225 0.85710 0.79489 0.78942 0.79312 1.19861 1.20250 1.19147 1.21109 1.00259 0.95579 1.07150 1.20841 0.98512 0.92433 0.96582 0.90385 0.90362 0.88096 0.89018 0.89202 0.91711 0.91717 0.90402 0.76315 0.86711 0.86034 0.92017 0.85215 0.85779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 10.76 101.05 1.09 0.29 16 2 S -0.26 -2.33 21.19 -107.50 -2.28 -4.61 16 3 C -0.06 -0.64 4.73 37.15 0.18 -0.46 16 4 C -0.09 -0.88 2.72 -91.77 -0.25 -1.13 16 5 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 6 C -0.15 -1.16 8.92 37.16 0.33 -0.83 16 7 C 0.51 6.95 7.00 -10.98 -0.08 6.88 16 8 O -0.53 -9.29 13.36 5.55 0.07 -9.22 16 9 N -0.66 -8.66 5.20 -9.82 -0.05 -8.71 16 10 C 0.03 0.55 6.30 -83.62 -0.53 0.02 16 11 C -0.09 -1.58 9.96 -39.41 -0.39 -1.97 16 12 C -0.18 -3.70 9.98 -39.42 -0.39 -4.09 16 13 C 0.15 3.57 6.65 -39.09 -0.26 3.31 16 14 O -0.18 -5.04 9.75 0.02 0.00 -5.03 16 15 C -0.39 -11.00 9.48 30.88 0.29 -10.71 16 16 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -25.32 13.67 55.48 0.76 -24.56 16 19 Si 0.94 20.70 29.55 -169.99 -5.02 15.68 16 20 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 23 C -0.22 -5.00 9.16 -39.42 -0.36 -5.36 16 24 C -0.06 -1.28 8.69 -39.42 -0.34 -1.63 16 25 H 0.08 0.49 8.14 -51.92 -0.42 0.06 16 26 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 27 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.09 0.98 7.96 -51.93 -0.41 0.57 16 29 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 30 H 0.06 0.43 7.67 -51.93 -0.40 0.03 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.58 7.13 -51.93 -0.37 0.21 16 33 H 0.40 3.80 8.38 -40.82 -0.34 3.46 16 34 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 36 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.13 2.96 5.63 -52.48 -0.30 2.66 16 38 H 0.12 2.47 6.23 -52.49 -0.33 2.14 16 LS Contribution 335.36 15.07 5.05 5.05 Total: -1.00 -32.62 335.36 -7.21 -39.83 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -4.94 Total: 6.26 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -0.81 Total: -14.70 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 0.71 Total: -33.27 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.07 Total: -14.25 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: -2.33 SS G_CDS: -2.28 Total: -4.61 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.62 -7.21 -39.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066755969.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.976 kcal (2) G-P(sol) polarization free energy of solvation -32.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds