Wall clock time and date at job start Tue Mar 31 2020 07:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81394 * 103.00348 * 2 1 4 4 C 1.52993 * 109.47321 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47086 * 304.99699 * 4 3 2 6 6 C 1.53003 * 109.47224 * 64.99672 * 4 3 2 7 7 C 1.50699 * 109.47317 * 185.00087 * 4 3 2 8 8 O 1.21290 * 120.00258 * 359.97438 * 7 4 3 9 9 N 1.34781 * 119.99945 * 179.97438 * 7 4 3 10 10 C 1.39994 * 119.99866 * 175.48179 * 9 7 4 11 11 C 1.38922 * 120.00029 * 214.84941 * 10 9 7 12 12 C 1.38002 * 119.99345 * 179.79274 * 11 10 9 13 13 C 1.38902 * 120.00673 * 0.45966 * 12 11 10 14 14 O 1.35774 * 120.00265 * 179.76835 * 13 12 11 15 15 C 1.34814 * 117.00183 * 185.36968 * 14 13 12 16 16 H 1.07995 * 120.00097 * 354.96224 * 15 14 13 17 17 C 1.38636 * 120.00184 * 174.96331 * 15 14 13 18 18 N 1.31573 * 119.99799 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00237 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46952 * 89.99960 * 19 17 15 21 21 H 1.48495 * 109.47275 * 209.99964 * 19 17 15 22 22 H 1.48503 * 109.46991 * 330.00100 * 19 17 15 23 23 C 1.38913 * 119.99922 * 359.79395 * 13 12 11 24 24 C 1.37997 * 120.00442 * 359.97438 * 23 13 12 25 25 H 1.09004 * 109.47121 * 300.00496 * 1 2 3 26 26 H 1.09001 * 109.47031 * 60.00066 * 1 2 3 27 27 H 1.08995 * 109.47676 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47167 * 59.99741 * 3 2 1 29 29 H 1.09008 * 109.47106 * 300.00144 * 3 2 1 30 30 H 1.09000 * 109.46845 * 180.02562 * 6 4 3 31 31 H 1.08996 * 109.46948 * 60.00418 * 6 4 3 32 32 H 1.08997 * 109.47326 * 299.99878 * 6 4 3 33 33 H 0.97001 * 119.99755 * 355.48175 * 9 7 4 34 34 H 1.07998 * 120.00479 * 0.02562 * 11 10 9 35 35 H 1.08006 * 119.99510 * 180.22951 * 12 11 10 36 36 H 0.97004 * 120.00325 * 179.97438 * 18 17 15 37 37 H 1.08006 * 119.99474 * 179.97438 * 23 13 12 38 38 H 1.07997 * 120.00028 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7674 0.0000 4 6 3.7424 1.9398 -0.0006 5 1 4.1702 1.3950 0.8410 6 6 4.3173 1.3916 -1.3083 7 6 4.0821 3.4028 0.1232 8 8 3.1956 4.2266 0.2036 9 7 5.3712 3.7958 0.1447 10 6 5.6869 5.1595 0.1643 11 6 6.8145 5.6211 -0.5032 12 6 7.1232 6.9660 -0.4874 13 6 6.3121 7.8569 0.2038 14 8 6.6186 9.1794 0.2232 15 6 5.8561 9.9730 1.0019 16 1 4.9951 9.5646 1.5100 17 6 6.1773 11.3135 1.1504 18 7 7.2265 11.8110 0.5317 19 14 5.1204 12.4133 2.2287 20 1 5.6408 12.3905 3.6194 21 1 5.1606 13.8033 1.7079 22 1 3.7197 11.9202 2.2162 23 6 5.1875 7.3946 0.8756 24 6 4.8759 6.0504 0.8559 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8032 2.2371 0.8899 29 1 1.8032 2.2371 -0.8900 30 1 5.4004 1.5140 -1.3085 31 1 3.8895 1.9364 -2.1498 32 1 4.0716 0.3334 -1.3978 33 1 6.0801 3.1337 0.1465 34 1 7.4473 4.9280 -1.0376 35 1 7.9978 7.3254 -1.0094 36 1 7.4511 12.7490 0.6353 37 1 4.5571 8.0873 1.4134 38 1 4.0018 5.6910 1.3786 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066755969.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:59 Heat of formation + Delta-G solvation = -63.710874 kcal Electronic energy + Delta-G solvation = -20537.156432 eV Core-core repulsion = 17277.701485 eV Total energy + Delta-G solvation = -3259.454947 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.63580 -40.44037 -38.29110 -35.73025 -35.30115 -34.14616 -31.87006 -29.99770 -29.63028 -28.07705 -27.32308 -25.05597 -23.86215 -22.66068 -20.99789 -19.93007 -19.18702 -18.28568 -18.08547 -16.90732 -16.67739 -16.33520 -16.11605 -15.83738 -15.50255 -15.26186 -15.11877 -14.73054 -14.59018 -14.30046 -14.17468 -13.90487 -13.58267 -13.35669 -13.22934 -13.19538 -12.96062 -12.71352 -12.46188 -12.35195 -12.23104 -12.14148 -11.42050 -11.14521 -10.99877 -10.74679 -10.51625 -9.84825 -8.66370 -8.63055 -8.48047 -6.14848 0.48976 0.53943 0.64003 1.34146 1.41473 1.51156 1.57043 1.62280 2.15957 2.18999 2.80797 3.13733 3.48619 3.50773 3.75680 3.79590 4.09287 4.11424 4.26327 4.31344 4.35444 4.47238 4.49975 4.62960 4.68128 4.75339 4.88585 4.89665 4.97600 5.06834 5.12333 5.29316 5.33870 5.43929 5.58107 5.69184 6.01165 6.15136 6.50735 6.96596 7.19496 7.75958 8.74666 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.029124 B = 0.002758 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.160096 B =10149.186998 C =10980.962938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.270 6.270 3 C -0.064 4.064 4 C -0.080 4.080 5 H 0.129 0.871 6 C -0.143 4.143 7 C 0.514 3.486 8 O -0.569 6.569 9 N -0.644 5.644 10 C 0.061 3.939 11 C -0.075 4.075 12 C -0.181 4.181 13 C 0.106 3.894 14 O -0.227 6.227 15 C -0.414 4.414 16 H 0.097 0.903 17 C -0.020 4.020 18 N -0.917 5.917 19 Si 1.016 2.984 20 H -0.262 1.262 21 H -0.269 1.269 22 H -0.258 1.258 23 C -0.230 4.230 24 C -0.077 4.077 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.117 0.883 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.427 0.573 34 H 0.168 0.832 35 H 0.129 0.871 36 H 0.273 0.727 37 H 0.115 0.885 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.728 -25.231 -1.009 26.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.044 6.044 3 C -0.213 4.213 4 C -0.102 4.102 5 H 0.147 0.853 6 C -0.200 4.200 7 C 0.301 3.699 8 O -0.447 6.447 9 N -0.291 5.291 10 C -0.033 4.033 11 C -0.095 4.095 12 C -0.200 4.200 13 C 0.056 3.944 14 O -0.134 6.134 15 C -0.490 4.490 16 H 0.114 0.886 17 C -0.218 4.218 18 N -0.556 5.556 19 Si 0.835 3.165 20 H -0.187 1.187 21 H -0.193 1.193 22 H -0.181 1.181 23 C -0.250 4.250 24 C -0.097 4.097 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.135 0.865 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.266 0.734 34 H 0.186 0.814 35 H 0.147 0.853 36 H 0.082 0.918 37 H 0.133 0.867 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.436 -25.272 -1.113 26.366 hybrid contribution -1.021 1.872 0.488 2.187 sum -8.456 -23.400 -0.625 24.889 Atomic orbital electron populations 1.23484 0.92113 1.07600 1.05600 1.86622 1.09838 1.09857 1.98103 1.23136 0.98148 0.94522 1.05514 1.21011 0.94918 0.90534 1.03757 0.85348 1.21870 1.02084 1.02517 0.93539 1.21228 0.82001 0.91846 0.74801 1.90714 1.48216 1.55750 1.50037 1.43107 1.08420 1.05058 1.72528 1.17408 0.98528 0.84286 1.03087 1.20797 0.96912 0.94026 0.97781 1.20342 1.01667 0.92471 1.05552 1.19952 0.94067 0.84986 0.95432 1.83934 1.54393 1.14034 1.60993 1.21760 1.09504 0.91135 1.26624 0.88599 1.26527 0.98480 0.97658 0.99137 1.70174 1.27372 1.15159 1.42846 0.84624 0.77747 0.76678 0.77406 1.18667 1.19313 1.18143 1.21098 0.99944 0.96663 1.07304 1.20926 0.99335 0.91847 0.97555 0.90080 0.89942 0.86487 0.90341 0.90320 0.89649 0.92779 0.89454 0.73411 0.81416 0.85322 0.91759 0.86683 0.85666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 10.76 113.37 1.22 -0.09 16 2 S -0.27 -4.10 21.19 -56.49 -1.20 -5.30 16 3 C -0.06 -1.16 4.73 71.98 0.34 -0.82 16 4 C -0.08 -1.27 2.72 -11.54 -0.03 -1.30 16 5 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 6 C -0.14 -1.73 8.92 71.98 0.64 -1.08 16 7 C 0.51 12.54 7.00 87.66 0.61 13.15 16 8 O -0.57 -19.42 13.36 -3.06 -0.04 -19.46 16 9 N -0.64 -14.51 5.20 -303.37 -1.58 -16.09 16 10 C 0.06 1.96 6.30 38.17 0.24 2.20 16 11 C -0.08 -2.35 9.96 22.38 0.22 -2.13 16 12 C -0.18 -7.38 9.98 22.37 0.22 -7.16 16 13 C 0.11 5.36 6.65 22.59 0.15 5.51 16 14 O -0.23 -13.77 9.75 -22.84 -0.22 -13.99 16 15 C -0.41 -24.64 9.48 67.92 0.64 -24.00 16 16 H 0.10 5.35 5.20 -2.91 -0.02 5.34 16 17 C -0.02 -1.17 5.49 84.83 0.47 -0.70 16 18 N -0.92 -56.51 13.67 21.61 0.30 -56.22 16 19 Si 1.02 43.79 29.55 68.60 2.03 45.81 16 20 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 21 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 22 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 23 C -0.23 -10.79 9.16 22.37 0.20 -10.58 16 24 C -0.08 -3.05 8.69 22.38 0.19 -2.86 16 25 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.08 1.60 7.96 -2.39 -0.02 1.59 16 29 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.08 0.69 7.67 -2.39 -0.02 0.68 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.09 0.96 7.13 -2.39 -0.02 0.94 16 33 H 0.43 5.76 8.38 -92.71 -0.78 4.98 16 34 H 0.17 3.51 8.06 -2.91 -0.02 3.49 16 35 H 0.13 5.01 8.06 -2.91 -0.02 4.99 16 36 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 37 H 0.12 5.59 5.63 -2.91 -0.02 5.58 16 38 H 0.13 4.97 6.23 -2.91 -0.02 4.95 16 Total: -1.00 -76.38 335.36 4.72 -71.66 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.31 Total: 23.44 kcal Atomic # 6 Polarization: -34.99 SS G_CDS: 5.13 Total: -29.86 kcal Atomic # 7 Polarization: -71.03 SS G_CDS: -1.28 Total: -72.31 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -0.26 Total: -33.45 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -4.10 SS G_CDS: -1.20 Total: -5.30 kcal Total: -76.38 4.72 -71.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066755969.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.946 kcal (2) G-P(sol) polarization free energy of solvation -76.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds