Wall clock time and date at job start Tue Mar 31 2020 07:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81396 * 103.00222 * 2 1 4 4 C 1.52999 * 109.46964 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47304 * 55.00720 * 4 3 2 6 6 C 1.52995 * 109.47519 * 294.99750 * 4 3 2 7 7 C 1.50702 * 109.47123 * 174.99748 * 4 3 2 8 8 O 1.21297 * 119.99980 * 0.02562 * 7 4 3 9 9 N 1.34779 * 120.00270 * 179.97438 * 7 4 3 10 10 C 1.39921 * 119.99780 * 184.25213 * 9 7 4 11 11 C 1.38963 * 120.04043 * 324.64994 * 10 9 7 12 12 C 1.38166 * 120.06534 * 179.74721 * 11 10 9 13 13 C 1.38173 * 120.13561 * 0.55118 * 12 11 10 14 14 C 1.38908 * 120.07095 * 359.69826 * 13 12 11 15 15 O 1.35751 * 120.02843 * 179.97438 * 14 13 12 16 16 C 1.34831 * 117.00074 * 185.36780 * 15 14 13 17 17 H 1.08006 * 119.99811 * 354.96317 * 16 15 14 18 18 C 1.38653 * 120.00224 * 174.96865 * 16 15 14 19 19 N 1.31555 * 120.00119 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00032 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47049 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47130 * 120.00028 * 20 18 16 23 23 H 1.48496 * 109.47076 * 240.00089 * 20 18 16 24 24 C 1.38724 * 120.03034 * 144.92666 * 10 9 7 25 25 H 1.08997 * 109.47496 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46812 * 300.00339 * 1 2 3 27 27 H 1.09006 * 109.46662 * 59.99919 * 1 2 3 28 28 H 1.09002 * 109.47591 * 59.99740 * 3 2 1 29 29 H 1.09004 * 109.47201 * 299.99548 * 3 2 1 30 30 H 1.08996 * 109.47658 * 179.97438 * 6 4 3 31 31 H 1.09005 * 109.47118 * 300.00765 * 6 4 3 32 32 H 1.08998 * 109.46822 * 59.99980 * 6 4 3 33 33 H 0.97000 * 119.99642 * 4.53984 * 9 7 4 34 34 H 1.08001 * 119.96720 * 0.02562 * 11 10 9 35 35 H 1.07997 * 119.92560 * 180.27276 * 12 11 10 36 36 H 1.07994 * 119.95723 * 179.72532 * 13 12 11 37 37 H 0.96995 * 120.00451 * 180.02562 * 19 18 16 38 38 H 1.07994 * 120.06846 * 359.95154 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9398 0.0006 5 1 4.1702 1.3950 -0.8410 6 6 4.3173 1.3917 1.3082 7 6 4.0822 3.4028 -0.1233 8 8 3.1955 4.2266 -0.2036 9 7 5.3712 3.7959 -0.1437 10 6 5.6865 5.1589 -0.1689 11 6 4.8798 6.0467 -0.8704 12 6 5.1878 7.3934 -0.8913 13 6 6.3045 7.8601 -0.2248 14 6 7.1178 6.9769 0.4739 15 8 8.2151 7.4362 1.1280 16 6 9.0217 6.5149 1.6922 17 1 8.7401 5.4722 1.6826 18 6 10.2126 6.9060 2.2850 19 7 10.5553 8.1760 2.2973 20 14 11.3304 5.6294 3.0661 21 1 10.7215 4.2828 2.9205 22 1 12.6532 5.6506 2.3915 23 1 11.5049 5.9399 4.5077 24 6 6.8082 5.6245 0.5016 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 1.8032 2.2372 0.8899 29 1 1.8033 2.2371 -0.8900 30 1 5.4004 1.5141 1.3085 31 1 3.8894 1.9365 2.1499 32 1 4.0716 0.3336 1.3978 33 1 6.0801 3.1339 -0.1451 34 1 4.0087 5.6843 -1.3960 35 1 4.5568 8.0820 -1.4336 36 1 6.5450 8.9127 -0.2468 37 1 11.3885 8.4496 2.7116 38 1 7.4387 4.9360 1.0443 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066762638.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:02 Heat of formation + Delta-G solvation = -43.635913 kcal Electronic energy + Delta-G solvation = -20745.805913 eV Core-core repulsion = 17487.221482 eV Total energy + Delta-G solvation = -3258.584431 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.41203 -38.76336 -36.58605 -34.76387 -34.22814 -32.25242 -29.52454 -29.30898 -28.59186 -27.35790 -25.38448 -24.17533 -21.83896 -21.42517 -19.85110 -18.06417 -17.81649 -17.11294 -16.21669 -15.70306 -15.65760 -15.05796 -14.76514 -14.57667 -14.19493 -14.01590 -13.91372 -13.65144 -13.53065 -13.16853 -13.01641 -12.59553 -12.38324 -12.31000 -11.79651 -11.70489 -11.52065 -11.47828 -11.16822 -11.02681 -10.80024 -10.45806 -10.30538 -9.88899 -9.57176 -9.40488 -8.83459 -7.97732 -7.77739 -7.19389 -6.47039 -4.06950 1.30913 1.92977 2.24815 2.34981 2.75024 3.10069 3.10848 3.16386 3.25710 3.93815 4.28917 4.50927 4.57890 4.67320 4.80854 4.81874 5.01654 5.07953 5.25792 5.26206 5.36781 5.38681 5.54842 5.67802 5.70600 5.94687 5.97431 6.04414 6.21365 6.25403 6.60982 6.93325 6.95943 7.09932 7.28458 7.39841 7.64087 7.77946 7.97071 8.23323 8.98385 9.68545 10.71075 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.020315 B = 0.003287 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.973191 B = 8515.398966 C = 9756.410641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.262 6.262 3 C -0.065 4.065 4 C -0.093 4.093 5 H 0.107 0.893 6 C -0.148 4.148 7 C 0.519 3.481 8 O -0.521 6.521 9 N -0.665 5.665 10 C 0.176 3.824 11 C -0.205 4.205 12 C -0.065 4.065 13 C -0.199 4.199 14 C 0.167 3.833 15 O -0.176 6.176 16 C -0.392 4.392 17 H 0.091 0.909 18 C 0.039 3.961 19 N -0.862 5.862 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.255 4.255 25 H 0.100 0.900 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.407 0.593 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.270 0.730 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.815 -15.244 -4.366 21.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.036 6.036 3 C -0.213 4.213 4 C -0.115 4.115 5 H 0.125 0.875 6 C -0.206 4.206 7 C 0.305 3.695 8 O -0.397 6.397 9 N -0.309 5.309 10 C 0.083 3.917 11 C -0.226 4.226 12 C -0.084 4.084 13 C -0.218 4.218 14 C 0.113 3.887 15 O -0.080 6.080 16 C -0.469 4.469 17 H 0.108 0.892 18 C -0.165 4.165 19 N -0.497 5.497 20 Si 0.765 3.235 21 H -0.192 1.192 22 H -0.201 1.201 23 H -0.202 1.202 24 C -0.276 4.276 25 H 0.119 0.881 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.243 0.757 34 H 0.140 0.860 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.080 0.920 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.538 -15.209 -4.268 20.804 hybrid contribution 0.098 0.019 0.437 0.448 sum -13.440 -15.189 -3.831 20.641 Atomic orbital electron populations 1.23384 0.94037 1.06425 1.05148 1.86713 1.07592 1.11239 1.98099 1.23215 0.97753 0.93718 1.06635 1.21029 0.95044 0.93448 1.02022 0.87487 1.21875 1.01228 1.02381 0.95103 1.20487 0.82515 0.90529 0.75997 1.90712 1.46867 1.54175 1.47906 1.43426 1.07848 1.06913 1.72731 1.17427 0.95600 0.82045 0.96588 1.20668 1.02877 0.93170 1.05856 1.20558 0.95450 0.94723 0.97666 1.20276 0.97757 0.99355 1.04441 1.19067 0.88340 0.91031 0.90261 1.84008 1.29424 1.35061 1.59472 1.21323 1.00423 0.89327 1.35789 0.89173 1.25281 0.96682 0.97267 0.97266 1.70042 1.23206 1.14860 1.41581 0.85656 0.79560 0.79446 0.78789 1.19174 1.20131 1.20153 1.20825 1.01639 0.96576 1.08586 0.88082 0.90371 0.90411 0.89176 0.89026 0.91519 0.91627 0.90280 0.75739 0.85957 0.86623 0.86367 0.92048 0.85218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 10.76 101.05 1.09 0.29 16 2 S -0.26 -2.37 21.19 -107.50 -2.28 -4.65 16 3 C -0.06 -0.65 4.73 37.16 0.18 -0.47 16 4 C -0.09 -0.94 2.72 -91.77 -0.25 -1.19 16 5 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 6 C -0.15 -1.35 8.92 37.15 0.33 -1.02 16 7 C 0.52 7.29 6.99 -10.98 -0.08 7.21 16 8 O -0.52 -9.07 13.38 5.54 0.07 -9.00 16 9 N -0.67 -9.71 5.19 -9.87 -0.05 -9.76 16 10 C 0.18 3.32 6.29 -83.72 -0.53 2.79 16 11 C -0.21 -3.91 8.69 -39.34 -0.34 -4.25 16 12 C -0.07 -1.22 10.03 -39.63 -0.40 -1.62 16 13 C -0.20 -4.25 9.99 -39.36 -0.39 -4.64 16 14 C 0.17 4.02 6.65 -39.14 -0.26 3.76 16 15 O -0.18 -4.98 9.76 0.04 0.00 -4.98 16 16 C -0.39 -10.76 9.49 30.89 0.29 -10.47 16 17 H 0.09 2.27 5.20 -52.48 -0.27 2.00 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -25.04 13.67 55.48 0.76 -24.29 16 20 Si 0.94 20.13 29.55 -169.99 -5.02 15.11 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 24 C -0.25 -5.44 9.08 -39.21 -0.36 -5.80 16 25 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 27 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 28 H 0.09 0.95 8.14 -51.92 -0.42 0.53 16 29 H 0.09 0.96 7.96 -51.92 -0.41 0.55 16 30 H 0.07 0.56 7.67 -51.93 -0.40 0.16 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.66 7.13 -51.93 -0.37 0.29 16 33 H 0.41 4.70 8.38 -40.82 -0.34 4.35 16 34 H 0.12 2.28 6.25 -52.49 -0.33 1.95 16 35 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 36 H 0.12 2.42 8.06 -52.49 -0.42 1.99 16 37 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.13 2.71 5.63 -52.49 -0.30 2.41 16 LS Contribution 335.40 15.07 5.05 5.05 Total: -1.00 -32.14 335.40 -7.21 -39.36 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -4.94 Total: 7.58 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -0.81 Total: -14.43 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.71 Total: -34.05 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.07 Total: -13.97 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: -2.37 SS G_CDS: -2.28 Total: -4.65 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.14 -7.21 -39.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066762638.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.278 kcal (2) G-P(sol) polarization free energy of solvation -32.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds