Wall clock time and date at job start Tue Mar 31 2020 07:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81396 * 103.00222 * 2 1 4 4 C 1.52999 * 109.46964 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47304 * 55.00720 * 4 3 2 6 6 C 1.52995 * 109.47519 * 294.99750 * 4 3 2 7 7 C 1.50702 * 109.47123 * 174.99748 * 4 3 2 8 8 O 1.21297 * 119.99980 * 0.02562 * 7 4 3 9 9 N 1.34779 * 120.00270 * 179.97438 * 7 4 3 10 10 C 1.39921 * 119.99780 * 184.25213 * 9 7 4 11 11 C 1.38963 * 120.04043 * 324.64994 * 10 9 7 12 12 C 1.38166 * 120.06534 * 179.74721 * 11 10 9 13 13 C 1.38173 * 120.13561 * 0.55118 * 12 11 10 14 14 C 1.38908 * 120.07095 * 359.69826 * 13 12 11 15 15 O 1.35751 * 120.02843 * 179.97438 * 14 13 12 16 16 C 1.34831 * 117.00074 * 185.36780 * 15 14 13 17 17 H 1.08006 * 119.99811 * 354.96317 * 16 15 14 18 18 C 1.38653 * 120.00224 * 174.96865 * 16 15 14 19 19 N 1.31555 * 120.00119 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00032 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47049 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47130 * 120.00028 * 20 18 16 23 23 H 1.48496 * 109.47076 * 240.00089 * 20 18 16 24 24 C 1.38724 * 120.03034 * 144.92666 * 10 9 7 25 25 H 1.08997 * 109.47496 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46812 * 300.00339 * 1 2 3 27 27 H 1.09006 * 109.46662 * 59.99919 * 1 2 3 28 28 H 1.09002 * 109.47591 * 59.99740 * 3 2 1 29 29 H 1.09004 * 109.47201 * 299.99548 * 3 2 1 30 30 H 1.08996 * 109.47658 * 179.97438 * 6 4 3 31 31 H 1.09005 * 109.47118 * 300.00765 * 6 4 3 32 32 H 1.08998 * 109.46822 * 59.99980 * 6 4 3 33 33 H 0.97000 * 119.99642 * 4.53984 * 9 7 4 34 34 H 1.08001 * 119.96720 * 0.02562 * 11 10 9 35 35 H 1.07997 * 119.92560 * 180.27276 * 12 11 10 36 36 H 1.07994 * 119.95723 * 179.72532 * 13 12 11 37 37 H 0.96995 * 120.00451 * 180.02562 * 19 18 16 38 38 H 1.07994 * 120.06846 * 359.95154 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9398 0.0006 5 1 4.1702 1.3950 -0.8410 6 6 4.3173 1.3917 1.3082 7 6 4.0822 3.4028 -0.1233 8 8 3.1955 4.2266 -0.2036 9 7 5.3712 3.7959 -0.1437 10 6 5.6865 5.1589 -0.1689 11 6 4.8798 6.0467 -0.8704 12 6 5.1878 7.3934 -0.8913 13 6 6.3045 7.8601 -0.2248 14 6 7.1178 6.9769 0.4739 15 8 8.2151 7.4362 1.1280 16 6 9.0217 6.5149 1.6922 17 1 8.7401 5.4722 1.6826 18 6 10.2126 6.9060 2.2850 19 7 10.5553 8.1760 2.2973 20 14 11.3304 5.6294 3.0661 21 1 10.7215 4.2828 2.9205 22 1 12.6532 5.6506 2.3915 23 1 11.5049 5.9399 4.5077 24 6 6.8082 5.6245 0.5016 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 1.8032 2.2372 0.8899 29 1 1.8033 2.2371 -0.8900 30 1 5.4004 1.5141 1.3085 31 1 3.8894 1.9365 2.1499 32 1 4.0716 0.3336 1.3978 33 1 6.0801 3.1339 -0.1451 34 1 4.0087 5.6843 -1.3960 35 1 4.5568 8.0820 -1.4336 36 1 6.5450 8.9127 -0.2468 37 1 11.3885 8.4496 2.7116 38 1 7.4387 4.9360 1.0443 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066762638.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:01 Heat of formation + Delta-G solvation = -63.536386 kcal Electronic energy + Delta-G solvation = -20746.668862 eV Core-core repulsion = 17487.221482 eV Total energy + Delta-G solvation = -3259.447380 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.72070 -40.43894 -38.24222 -35.82126 -35.53612 -34.21571 -31.03886 -30.26907 -29.88312 -28.12656 -27.33198 -25.32393 -23.50709 -22.81765 -21.13615 -19.79234 -19.32232 -18.36069 -17.39505 -16.89741 -16.82912 -16.58716 -16.15686 -15.98052 -15.60924 -15.47561 -15.16419 -14.68214 -14.56059 -14.31925 -14.19942 -13.91497 -13.56350 -13.36330 -13.22396 -13.03138 -12.75614 -12.67454 -12.45035 -12.38758 -12.28040 -12.07603 -11.45335 -11.25400 -11.01094 -10.81275 -10.69307 -9.37350 -8.90731 -8.66590 -8.46048 -6.14974 0.37173 0.62065 0.68850 1.37101 1.44421 1.51780 1.55301 1.60823 2.07085 2.18570 2.83011 3.15801 3.44419 3.49089 3.68677 3.75989 4.10825 4.21800 4.32659 4.32837 4.36311 4.44065 4.46921 4.61564 4.63462 4.73869 4.83736 4.89548 4.93000 5.02108 5.11953 5.23740 5.38424 5.45875 5.65249 5.66687 6.02094 6.15804 6.40708 6.98357 7.04814 7.77744 8.77200 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.020315 B = 0.003287 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.973191 B = 8515.398966 C = 9756.410641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.275 6.275 3 C -0.062 4.062 4 C -0.081 4.081 5 H 0.130 0.870 6 C -0.146 4.146 7 C 0.521 3.479 8 O -0.554 6.554 9 N -0.658 5.658 10 C 0.184 3.816 11 C -0.200 4.200 12 C -0.054 4.054 13 C -0.213 4.213 14 C 0.133 3.867 15 O -0.227 6.227 16 C -0.412 4.412 17 H 0.105 0.895 18 C -0.023 4.023 19 N -0.921 5.921 20 Si 1.019 2.981 21 H -0.247 1.247 22 H -0.270 1.270 23 H -0.271 1.271 24 C -0.257 4.257 25 H 0.116 0.884 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.424 0.576 34 H 0.134 0.866 35 H 0.153 0.847 36 H 0.118 0.882 37 H 0.272 0.728 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.130 -18.179 -4.904 24.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.049 6.049 3 C -0.210 4.210 4 C -0.103 4.103 5 H 0.148 0.852 6 C -0.203 4.203 7 C 0.308 3.692 8 O -0.432 6.432 9 N -0.303 5.303 10 C 0.089 3.911 11 C -0.220 4.220 12 C -0.072 4.072 13 C -0.233 4.233 14 C 0.082 3.918 15 O -0.133 6.133 16 C -0.488 4.488 17 H 0.122 0.878 18 C -0.220 4.220 19 N -0.559 5.559 20 Si 0.838 3.162 21 H -0.170 1.170 22 H -0.195 1.195 23 H -0.197 1.197 24 C -0.279 4.279 25 H 0.134 0.866 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.109 0.891 33 H 0.262 0.738 34 H 0.152 0.848 35 H 0.171 0.829 36 H 0.136 0.864 37 H 0.081 0.919 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.895 -18.195 -4.833 24.006 hybrid contribution 0.185 0.872 0.452 0.999 sum -14.711 -17.323 -4.381 23.145 Atomic orbital electron populations 1.23482 0.91807 1.07607 1.05714 1.86720 1.10128 1.09966 1.98119 1.23117 0.97506 0.94561 1.05848 1.21021 0.95421 0.90378 1.03474 0.85249 1.21880 1.01718 1.02788 0.93922 1.21209 0.81535 0.92007 0.74429 1.90694 1.47694 1.55525 1.49253 1.43424 1.08964 1.05486 1.72473 1.17464 0.94303 0.84191 0.95106 1.20992 1.02741 0.93365 1.04947 1.20943 0.94463 0.95433 0.96379 1.20501 0.98516 0.99354 1.04944 1.19596 0.88126 0.92856 0.91229 1.83980 1.31254 1.36359 1.61710 1.21865 1.00922 0.90061 1.35983 0.87798 1.26600 0.98120 0.99674 0.97645 1.70190 1.24273 1.17496 1.43913 0.84526 0.77035 0.77123 0.77523 1.16977 1.19462 1.19666 1.20855 1.02541 0.95611 1.08887 0.86568 0.89901 0.89811 0.90146 0.89686 0.90522 0.92729 0.89137 0.73805 0.84792 0.82933 0.86357 0.91855 0.85142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 10.76 113.37 1.22 -0.04 16 2 S -0.27 -4.32 21.19 -56.49 -1.20 -5.52 16 3 C -0.06 -1.11 4.73 71.98 0.34 -0.77 16 4 C -0.08 -1.42 2.72 -11.54 -0.03 -1.46 16 5 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 6 C -0.15 -2.28 8.92 71.98 0.64 -1.64 16 7 C 0.52 13.47 6.99 87.66 0.61 14.08 16 8 O -0.55 -18.29 13.38 -3.08 -0.04 -18.33 16 9 N -0.66 -17.75 5.19 -303.53 -1.58 -19.33 16 10 C 0.18 6.66 6.29 38.14 0.24 6.90 16 11 C -0.20 -7.22 8.69 22.43 0.19 -7.03 16 12 C -0.05 -1.93 10.03 22.24 0.22 -1.71 16 13 C -0.21 -9.23 9.99 22.41 0.22 -9.00 16 14 C 0.13 6.59 6.65 22.56 0.15 6.74 16 15 O -0.23 -13.43 9.76 -22.76 -0.22 -13.66 16 16 C -0.41 -23.36 9.49 67.92 0.64 -22.71 16 17 H 0.10 5.31 5.20 -2.91 -0.02 5.30 16 18 C -0.02 -1.27 5.49 84.83 0.47 -0.81 16 19 N -0.92 -55.82 13.67 21.61 0.30 -55.53 16 20 Si 1.02 41.58 29.55 68.60 2.03 43.60 16 21 H -0.25 -9.07 7.11 99.48 0.71 -8.37 16 22 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 23 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 24 C -0.26 -10.99 9.08 22.51 0.20 -10.78 16 25 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.08 1.64 7.96 -2.39 -0.02 1.62 16 30 H 0.08 1.05 7.67 -2.39 -0.02 1.03 16 31 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.09 1.26 7.13 -2.39 -0.02 1.24 16 33 H 0.42 8.65 8.38 -92.71 -0.78 7.87 16 34 H 0.13 4.63 6.25 -2.91 -0.02 4.61 16 35 H 0.15 4.32 8.06 -2.91 -0.02 4.29 16 36 H 0.12 4.99 8.06 -2.91 -0.02 4.97 16 37 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 38 H 0.13 5.44 5.63 -2.91 -0.02 5.43 16 Total: -1.00 -72.53 335.40 4.72 -67.81 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: 0.31 Total: 29.18 kcal Atomic # 6 Polarization: -33.36 SS G_CDS: 5.13 Total: -28.23 kcal Atomic # 7 Polarization: -73.57 SS G_CDS: -1.28 Total: -74.86 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -0.26 Total: -31.99 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Atomic # 16 Polarization: -4.32 SS G_CDS: -1.20 Total: -5.52 kcal Total: -72.53 4.72 -67.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066762638.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.269 kcal (2) G-P(sol) polarization free energy of solvation -72.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds