Wall clock time and date at job start Tue Mar 31 2020 07:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81395 * 102.99981 * 2 1 4 4 C 1.53000 * 109.47130 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46924 * 305.00132 * 4 3 2 6 6 C 1.52999 * 109.47083 * 64.99845 * 4 3 2 7 7 C 1.50698 * 109.47553 * 185.00018 * 4 3 2 8 8 O 1.21295 * 119.99450 * 0.02562 * 7 4 3 9 9 N 1.34772 * 120.00634 * 179.97438 * 7 4 3 10 10 C 1.39923 * 120.00455 * 175.48748 * 9 7 4 11 11 C 1.38960 * 120.03679 * 215.14449 * 10 9 7 12 12 C 1.38162 * 120.06466 * 179.97438 * 11 10 9 13 13 C 1.38168 * 120.13757 * 359.75046 * 12 11 10 14 14 C 1.38898 * 120.07214 * 0.50489 * 13 12 11 15 15 O 1.35750 * 120.03559 * 179.76453 * 14 13 12 16 16 C 1.34831 * 116.99929 * 354.35176 * 15 14 13 17 17 H 1.08000 * 120.00228 * 5.01437 * 16 15 14 18 18 C 1.38652 * 120.00340 * 185.02159 * 16 15 14 19 19 N 1.31556 * 120.00201 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99757 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47048 * 89.99927 * 20 18 16 22 22 H 1.48496 * 109.46896 * 209.99826 * 20 18 16 23 23 H 1.48500 * 109.46989 * 329.99704 * 20 18 16 24 24 C 1.38709 * 120.03144 * 35.12454 * 10 9 7 25 25 H 1.08999 * 109.47235 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46911 * 299.99552 * 1 2 3 27 27 H 1.08999 * 109.47333 * 59.99858 * 1 2 3 28 28 H 1.09003 * 109.47049 * 60.00454 * 3 2 1 29 29 H 1.09001 * 109.47256 * 300.00027 * 3 2 1 30 30 H 1.08998 * 109.47266 * 299.99976 * 6 4 3 31 31 H 1.09004 * 109.47006 * 60.00338 * 6 4 3 32 32 H 1.09004 * 109.47243 * 180.02562 * 6 4 3 33 33 H 0.97005 * 119.99568 * 355.48724 * 9 7 4 34 34 H 1.08001 * 119.96790 * 359.95996 * 11 10 9 35 35 H 1.08005 * 119.92785 * 179.97438 * 12 11 10 36 36 H 1.08004 * 119.96006 * 180.24565 * 13 12 11 37 37 H 0.97001 * 120.00165 * 179.97438 * 19 18 16 38 38 H 1.08005 * 120.07495 * 0.04288 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 1 4.1701 1.3950 0.8410 6 6 4.3172 1.3917 -1.3083 7 6 4.0821 3.4029 0.1232 8 8 3.1954 4.2265 0.2045 9 7 5.3710 3.7960 0.1447 10 6 5.6866 5.1590 0.1643 11 6 6.8109 5.6224 -0.5082 12 6 7.1227 6.9683 -0.4895 13 6 6.3156 7.8580 0.1930 14 6 5.1934 7.4003 0.8716 15 8 4.4035 8.2745 1.5459 16 6 4.8262 9.5529 1.6159 17 1 5.7126 9.8587 1.0800 18 6 4.1231 10.4750 2.3760 19 7 4.5358 11.7222 2.4447 20 14 2.5896 9.9462 3.3025 21 1 2.9673 9.4852 4.6626 22 1 1.6558 11.0958 3.4110 23 1 1.9266 8.8374 2.5703 24 6 4.8773 6.0490 0.8548 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8032 2.2371 0.8901 29 1 1.8031 2.2371 -0.8900 30 1 4.0715 0.3336 -1.3978 31 1 3.8894 1.9366 -2.1499 32 1 5.4003 1.5142 -1.3086 33 1 6.0800 3.1339 0.1465 34 1 7.4416 4.9299 -1.0457 35 1 7.9973 7.3260 -1.0126 36 1 6.5598 8.9100 0.2024 37 1 4.0437 12.3674 2.9762 38 1 4.0031 5.6913 1.3786 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066762640.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:04 Heat of formation + Delta-G solvation = -40.318508 kcal Electronic energy + Delta-G solvation = -20813.323368 eV Core-core repulsion = 17554.882791 eV Total energy + Delta-G solvation = -3258.440577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.47000 -38.88061 -36.81916 -34.80511 -34.16761 -32.36900 -29.71135 -29.38012 -28.69375 -27.38105 -25.26154 -24.20004 -22.12013 -21.15327 -19.95897 -18.13160 -17.80278 -17.18964 -16.23429 -15.73092 -15.68239 -15.23062 -14.83925 -14.64307 -14.13965 -14.01492 -13.80726 -13.77417 -13.49031 -13.19891 -12.97357 -12.50244 -12.40374 -12.34997 -12.27815 -11.78352 -11.57658 -11.51805 -11.21549 -10.99746 -10.83931 -10.31745 -10.22067 -9.87814 -9.69501 -9.26138 -8.85967 -7.97579 -7.84129 -7.32955 -6.40616 -4.07130 1.31439 1.88450 2.21451 2.24949 2.70998 3.15762 3.25477 3.28124 3.45638 4.25757 4.26695 4.42873 4.54183 4.59943 4.83363 4.83606 4.89105 5.03768 5.11978 5.24561 5.33968 5.39437 5.49977 5.55367 5.66542 5.70435 5.86598 6.04745 6.10190 6.25448 6.48484 6.76729 6.91122 7.10111 7.31345 7.55061 7.57165 7.81121 8.03426 8.20564 8.94950 9.58052 10.66826 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.017613 B = 0.003609 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.371464 B = 7755.910069 C = 9225.259030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.263 6.263 3 C -0.067 4.067 4 C -0.092 4.092 5 H 0.108 0.892 6 C -0.146 4.146 7 C 0.515 3.485 8 O -0.512 6.512 9 N -0.666 5.666 10 C 0.172 3.828 11 C -0.226 4.226 12 C -0.060 4.060 13 C -0.232 4.232 14 C 0.173 3.827 15 O -0.213 6.213 16 C -0.389 4.389 17 H 0.108 0.892 18 C 0.065 3.935 19 N -0.879 5.879 20 Si 0.903 3.097 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.258 1.258 24 C -0.187 4.187 25 H 0.101 0.899 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.407 0.593 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.134 0.866 37 H 0.279 0.721 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.020 -22.640 -5.890 23.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.038 6.038 3 C -0.215 4.215 4 C -0.114 4.114 5 H 0.126 0.874 6 C -0.204 4.204 7 C 0.300 3.700 8 O -0.386 6.386 9 N -0.310 5.310 10 C 0.079 3.921 11 C -0.247 4.247 12 C -0.079 4.079 13 C -0.251 4.251 14 C 0.120 3.880 15 O -0.118 6.118 16 C -0.464 4.464 17 H 0.125 0.875 18 C -0.139 4.139 19 N -0.517 5.517 20 Si 0.728 3.272 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.182 1.182 24 C -0.209 4.209 25 H 0.119 0.881 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.242 0.758 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.152 0.848 37 H 0.090 0.910 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.316 -22.760 -5.633 23.484 hybrid contribution -0.998 0.780 0.389 1.325 sum -2.314 -21.980 -5.244 22.715 Atomic orbital electron populations 1.23387 0.93883 1.06422 1.05266 1.86627 1.07794 1.11233 1.98117 1.23232 0.97698 0.93737 1.06846 1.21022 0.95153 0.93335 1.01937 0.87447 1.21863 1.00934 1.02424 0.95181 1.20552 0.82588 0.90620 0.76236 1.90784 1.46777 1.54045 1.46950 1.43334 1.07865 1.06495 1.73347 1.17169 0.95863 0.82020 0.97081 1.20349 1.00731 0.96094 1.07549 1.20568 0.97995 0.92242 0.97078 1.21307 0.98074 1.01159 1.04601 1.18874 0.89205 0.89106 0.90860 1.83586 1.43787 1.19579 1.64859 1.20787 1.13488 0.80879 1.31288 0.87507 1.24450 0.98838 0.94152 0.96435 1.69644 1.40030 1.02222 1.39820 0.86214 0.81902 0.78756 0.80320 1.19848 1.20733 1.18203 1.20166 1.03922 0.90483 1.06290 0.88079 0.90327 0.90336 0.88877 0.89120 0.90287 0.91669 0.91702 0.75756 0.87135 0.86703 0.84810 0.91044 0.84906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 10.76 101.05 1.09 0.24 16 2 S -0.26 -2.39 21.19 -107.50 -2.28 -4.67 16 3 C -0.07 -0.68 4.73 37.16 0.18 -0.51 16 4 C -0.09 -0.89 2.72 -91.77 -0.25 -1.14 16 5 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 6 C -0.15 -1.14 8.92 37.16 0.33 -0.81 16 7 C 0.52 7.14 7.00 -10.99 -0.08 7.06 16 8 O -0.51 -9.49 13.36 5.54 0.07 -9.42 16 9 N -0.67 -8.76 5.19 -9.88 -0.05 -8.81 16 10 C 0.17 3.01 6.30 -83.72 -0.53 2.48 16 11 C -0.23 -3.66 9.96 -39.34 -0.39 -4.05 16 12 C -0.06 -1.06 10.03 -39.64 -0.40 -1.46 16 13 C -0.23 -5.04 9.16 -39.36 -0.36 -5.40 16 14 C 0.17 4.15 6.64 -39.14 -0.26 3.89 16 15 O -0.21 -5.86 8.58 0.05 0.00 -5.86 16 16 C -0.39 -11.17 9.95 30.89 0.31 -10.86 16 17 H 0.11 3.09 5.43 -52.49 -0.29 2.81 16 18 C 0.06 1.84 5.49 -17.52 -0.10 1.75 16 19 N -0.88 -25.68 13.96 55.48 0.77 -24.91 16 20 Si 0.90 22.31 28.62 -169.99 -4.86 17.45 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.26 -6.54 7.11 56.52 0.40 -6.13 16 24 C -0.19 -4.05 8.64 -39.21 -0.34 -4.39 16 25 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 26 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 27 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 28 H 0.09 1.06 7.95 -51.92 -0.41 0.65 16 29 H 0.09 0.98 8.14 -51.92 -0.42 0.56 16 30 H 0.08 0.57 7.13 -51.93 -0.37 0.20 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 33 H 0.41 3.70 8.39 -40.82 -0.34 3.35 16 34 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 36 H 0.13 3.03 5.63 -52.48 -0.30 2.73 16 37 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.13 3.02 6.23 -52.48 -0.33 2.69 16 LS Contribution 334.25 15.07 5.04 5.04 Total: -1.00 -32.53 334.25 -7.05 -39.59 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -4.95 Total: 4.79 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -0.80 Total: -13.19 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: 0.72 Total: -33.72 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: 0.07 Total: -15.28 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.86 Total: 17.45 kcal Atomic # 16 Polarization: -2.39 SS G_CDS: -2.28 Total: -4.67 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.53 -7.05 -39.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066762640.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.733 kcal (2) G-P(sol) polarization free energy of solvation -32.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds