Wall clock time and date at job start Tue Mar 31 2020 07:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81395 * 102.99981 * 2 1 4 4 C 1.53000 * 109.47130 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46924 * 305.00132 * 4 3 2 6 6 C 1.52999 * 109.47083 * 64.99845 * 4 3 2 7 7 C 1.50698 * 109.47553 * 185.00018 * 4 3 2 8 8 O 1.21295 * 119.99450 * 0.02562 * 7 4 3 9 9 N 1.34772 * 120.00634 * 179.97438 * 7 4 3 10 10 C 1.39923 * 120.00455 * 175.48748 * 9 7 4 11 11 C 1.38960 * 120.03679 * 215.14449 * 10 9 7 12 12 C 1.38162 * 120.06466 * 179.97438 * 11 10 9 13 13 C 1.38168 * 120.13757 * 359.75046 * 12 11 10 14 14 C 1.38898 * 120.07214 * 0.50489 * 13 12 11 15 15 O 1.35750 * 120.03559 * 179.76453 * 14 13 12 16 16 C 1.34831 * 116.99929 * 354.35176 * 15 14 13 17 17 H 1.08000 * 120.00228 * 5.01437 * 16 15 14 18 18 C 1.38652 * 120.00340 * 185.02159 * 16 15 14 19 19 N 1.31556 * 120.00201 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99757 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47048 * 89.99927 * 20 18 16 22 22 H 1.48496 * 109.46896 * 209.99826 * 20 18 16 23 23 H 1.48500 * 109.46989 * 329.99704 * 20 18 16 24 24 C 1.38709 * 120.03144 * 35.12454 * 10 9 7 25 25 H 1.08999 * 109.47235 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46911 * 299.99552 * 1 2 3 27 27 H 1.08999 * 109.47333 * 59.99858 * 1 2 3 28 28 H 1.09003 * 109.47049 * 60.00454 * 3 2 1 29 29 H 1.09001 * 109.47256 * 300.00027 * 3 2 1 30 30 H 1.08998 * 109.47266 * 299.99976 * 6 4 3 31 31 H 1.09004 * 109.47006 * 60.00338 * 6 4 3 32 32 H 1.09004 * 109.47243 * 180.02562 * 6 4 3 33 33 H 0.97005 * 119.99568 * 355.48724 * 9 7 4 34 34 H 1.08001 * 119.96790 * 359.95996 * 11 10 9 35 35 H 1.08005 * 119.92785 * 179.97438 * 12 11 10 36 36 H 1.08004 * 119.96006 * 180.24565 * 13 12 11 37 37 H 0.97001 * 120.00165 * 179.97438 * 19 18 16 38 38 H 1.08005 * 120.07495 * 0.04288 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 1 4.1701 1.3950 0.8410 6 6 4.3172 1.3917 -1.3083 7 6 4.0821 3.4029 0.1232 8 8 3.1954 4.2265 0.2045 9 7 5.3710 3.7960 0.1447 10 6 5.6866 5.1590 0.1643 11 6 6.8109 5.6224 -0.5082 12 6 7.1227 6.9683 -0.4895 13 6 6.3156 7.8580 0.1930 14 6 5.1934 7.4003 0.8716 15 8 4.4035 8.2745 1.5459 16 6 4.8262 9.5529 1.6159 17 1 5.7126 9.8587 1.0800 18 6 4.1231 10.4750 2.3760 19 7 4.5358 11.7222 2.4447 20 14 2.5896 9.9462 3.3025 21 1 2.9673 9.4852 4.6626 22 1 1.6558 11.0958 3.4110 23 1 1.9266 8.8374 2.5703 24 6 4.8773 6.0490 0.8548 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8032 2.2371 0.8901 29 1 1.8031 2.2371 -0.8900 30 1 4.0715 0.3336 -1.3978 31 1 3.8894 1.9366 -2.1499 32 1 5.4003 1.5142 -1.3086 33 1 6.0800 3.1339 0.1465 34 1 7.4416 4.9299 -1.0457 35 1 7.9973 7.3260 -1.0126 36 1 6.5598 8.9100 0.2024 37 1 4.0437 12.3674 2.9762 38 1 4.0031 5.6913 1.3786 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066762640.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:04 Heat of formation + Delta-G solvation = -61.441763 kcal Electronic energy + Delta-G solvation = -20814.239341 eV Core-core repulsion = 17554.882791 eV Total energy + Delta-G solvation = -3259.356550 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.75288 -40.55120 -38.42833 -35.80678 -35.46234 -34.45957 -31.32909 -30.27352 -29.88468 -28.10674 -27.26882 -25.35347 -23.56099 -22.72885 -21.11086 -19.91889 -19.44226 -18.38008 -17.38155 -16.91536 -16.88353 -16.68698 -16.39338 -15.77349 -15.69742 -15.63343 -15.09564 -14.70156 -14.42031 -14.34544 -14.28711 -14.17050 -13.93189 -13.31822 -13.28868 -13.07538 -12.90762 -12.76309 -12.51766 -12.38616 -12.25688 -12.06780 -11.52128 -11.30541 -11.03974 -10.89369 -10.72570 -9.42708 -8.95344 -8.68041 -8.53347 -6.25303 0.35450 0.60317 0.63114 1.25749 1.29120 1.47311 1.51790 1.57632 2.03897 2.24704 2.73998 2.99403 3.16094 3.44463 3.73635 3.77888 4.09731 4.22147 4.29261 4.33535 4.34176 4.37515 4.47192 4.60544 4.65927 4.70106 4.86941 4.88150 4.92720 4.95747 5.28220 5.33692 5.36567 5.40922 5.66506 5.76227 5.89099 6.19684 6.41333 6.81642 7.11366 7.57833 8.58227 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.017613 B = 0.003609 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.371464 B = 7755.910069 C = 9225.259030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.264 6.264 3 C -0.068 4.068 4 C -0.079 4.079 5 H 0.131 0.869 6 C -0.142 4.142 7 C 0.513 3.487 8 O -0.563 6.563 9 N -0.649 5.649 10 C 0.181 3.819 11 C -0.192 4.192 12 C -0.053 4.053 13 C -0.249 4.249 14 C 0.133 3.867 15 O -0.250 6.250 16 C -0.398 4.398 17 H 0.088 0.912 18 C 0.015 3.985 19 N -0.919 5.919 20 Si 0.963 3.037 21 H -0.264 1.264 22 H -0.262 1.262 23 H -0.275 1.275 24 C -0.204 4.204 25 H 0.118 0.882 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.432 0.568 34 H 0.168 0.832 35 H 0.156 0.844 36 H 0.113 0.887 37 H 0.285 0.715 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.288 -26.429 -7.106 27.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.038 6.038 3 C -0.217 4.217 4 C -0.101 4.101 5 H 0.149 0.851 6 C -0.199 4.199 7 C 0.301 3.699 8 O -0.440 6.440 9 N -0.297 5.297 10 C 0.086 3.914 11 C -0.213 4.213 12 C -0.071 4.071 13 C -0.269 4.269 14 C 0.083 3.917 15 O -0.157 6.157 16 C -0.475 4.475 17 H 0.106 0.894 18 C -0.184 4.184 19 N -0.560 5.560 20 Si 0.786 3.214 21 H -0.189 1.189 22 H -0.186 1.186 23 H -0.200 1.200 24 C -0.226 4.226 25 H 0.137 0.863 26 H 0.097 0.903 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.273 0.727 34 H 0.185 0.815 35 H 0.174 0.826 36 H 0.131 0.869 37 H 0.095 0.905 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.043 -26.623 -6.867 27.494 hybrid contribution -1.273 1.634 0.581 2.151 sum -1.231 -24.989 -6.286 25.797 Atomic orbital electron populations 1.23494 0.92214 1.07654 1.05555 1.86547 1.09737 1.09435 1.98095 1.23157 0.98276 0.94816 1.05420 1.21037 0.94878 0.90093 1.04128 0.85149 1.21878 1.02212 1.02588 0.93234 1.21387 0.81989 0.92069 0.74490 1.90785 1.48326 1.55874 1.49049 1.43259 1.08716 1.05130 1.72545 1.17319 0.95149 0.83535 0.95368 1.20951 0.99470 0.96201 1.04637 1.21036 0.98098 0.92387 0.95587 1.21364 0.98527 1.01166 1.05824 1.19390 0.90482 0.89742 0.92042 1.83533 1.45531 1.19202 1.67442 1.20769 1.13200 0.82071 1.31421 0.89449 1.25169 1.01601 0.94215 0.97417 1.69709 1.41712 1.03065 1.41528 0.85336 0.78755 0.78249 0.79081 1.18853 1.18611 1.19995 1.20231 1.04413 0.90290 1.07646 0.86329 0.90267 0.89916 0.90733 0.90268 0.89311 0.92677 0.89313 0.72739 0.81502 0.82637 0.86901 0.90490 0.86930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.48 10.76 113.37 1.22 -0.26 16 2 S -0.26 -4.26 21.19 -56.49 -1.20 -5.45 16 3 C -0.07 -1.33 4.73 71.98 0.34 -0.99 16 4 C -0.08 -1.33 2.72 -11.54 -0.03 -1.36 16 5 H 0.13 1.66 8.14 -2.38 -0.02 1.64 16 6 C -0.14 -1.68 8.92 71.98 0.64 -1.04 16 7 C 0.51 13.35 7.00 87.66 0.61 13.96 16 8 O -0.56 -21.17 13.36 -3.08 -0.04 -21.21 16 9 N -0.65 -14.85 5.19 -303.56 -1.58 -16.43 16 10 C 0.18 5.87 6.30 38.14 0.24 6.11 16 11 C -0.19 -5.28 9.96 22.42 0.22 -5.05 16 12 C -0.05 -1.70 10.03 22.23 0.22 -1.48 16 13 C -0.25 -11.03 9.16 22.41 0.21 -10.83 16 14 C 0.13 6.68 6.64 22.56 0.15 6.83 16 15 O -0.25 -14.59 8.58 -22.75 -0.20 -14.78 16 16 C -0.40 -24.36 9.95 67.92 0.68 -23.69 16 17 H 0.09 5.48 5.43 -2.91 -0.02 5.46 16 18 C 0.01 0.88 5.49 84.83 0.47 1.35 16 19 N -0.92 -55.99 13.96 21.61 0.30 -55.69 16 20 Si 0.96 48.00 28.62 68.60 1.96 49.96 16 21 H -0.26 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 23 H -0.27 -14.28 7.11 99.48 0.71 -13.57 16 24 C -0.20 -8.99 8.64 22.51 0.19 -8.79 16 25 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.07 1.72 7.95 -2.39 -0.02 1.70 16 29 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.09 0.95 7.13 -2.39 -0.02 0.93 16 31 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.09 0.64 7.67 -2.38 -0.02 0.62 16 33 H 0.43 5.53 8.39 -92.70 -0.78 4.75 16 34 H 0.17 2.87 8.06 -2.91 -0.02 2.85 16 35 H 0.16 3.80 8.06 -2.91 -0.02 3.78 16 36 H 0.11 5.43 5.63 -2.91 -0.02 5.41 16 37 H 0.29 15.92 8.31 -92.71 -0.77 15.15 16 38 H 0.11 5.38 6.23 -2.91 -0.02 5.36 16 Total: -1.00 -77.27 334.25 4.72 -72.55 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.30 Total: 16.30 kcal Atomic # 6 Polarization: -30.40 SS G_CDS: 5.16 Total: -25.24 kcal Atomic # 7 Polarization: -70.84 SS G_CDS: -1.28 Total: -72.12 kcal Atomic # 8 Polarization: -35.76 SS G_CDS: -0.24 Total: -36.00 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 1.96 Total: 49.96 kcal Atomic # 16 Polarization: -4.26 SS G_CDS: -1.20 Total: -5.45 kcal Total: -77.27 4.72 -72.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066762640.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.112 kcal (2) G-P(sol) polarization free energy of solvation -77.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds