Wall clock time and date at job start Tue Mar 31 2020 07:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00063 * 2 1 4 4 C 1.50696 * 109.47400 * 180.02562 * 3 2 1 5 5 O 1.21305 * 119.99960 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00518 * 180.27811 * 4 3 2 7 7 C 1.40135 * 120.00349 * 175.47998 * 6 4 3 8 8 C 1.38650 * 120.10194 * 34.52583 * 7 6 4 9 9 C 1.38246 * 120.01302 * 179.69892 * 8 7 6 10 10 C 1.38302 * 120.20767 * 0.59669 * 9 8 7 11 11 C 1.38197 * 120.19811 * 359.68026 * 10 9 8 12 12 C 1.38789 * 119.99182 * 0.02562 * 11 10 9 13 13 S 1.76195 * 120.10568 * 179.97438 * 12 11 10 14 14 C 1.81404 * 103.00230 * 4.48210 * 13 12 11 15 15 H 1.09002 * 109.46867 * 49.60901 * 14 13 12 16 16 C 1.52993 * 109.46992 * 169.60994 * 14 13 12 17 17 C 1.50694 * 109.46902 * 289.60988 * 14 13 12 18 18 H 1.08000 * 120.00087 * 0.02562 * 17 14 13 19 19 C 1.37880 * 119.99871 * 179.97438 * 17 14 13 20 20 N 1.31515 * 119.99842 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 120.00004 * 180.02562 * 19 17 14 22 22 H 1.48492 * 109.47254 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47043 * 120.00039 * 21 19 17 24 24 H 1.48502 * 109.46993 * 239.99995 * 21 19 17 25 25 H 1.08996 * 109.46898 * 299.99387 * 1 2 3 26 26 H 1.09003 * 109.46920 * 59.99675 * 1 2 3 27 27 H 1.09002 * 109.46508 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46746 * 60.00291 * 3 2 1 29 29 H 1.08996 * 109.47347 * 300.00390 * 3 2 1 30 30 H 0.97003 * 119.99799 * 355.48373 * 6 4 3 31 31 H 1.08001 * 119.99337 * 359.97438 * 8 7 6 32 32 H 1.07994 * 119.90126 * 180.32234 * 9 8 7 33 33 H 1.07995 * 119.90327 * 179.70006 * 10 9 8 34 34 H 1.08002 * 120.00502 * 179.97438 * 11 10 9 35 35 H 1.08997 * 109.47238 * 65.14505 * 16 14 13 36 36 H 1.09004 * 109.46823 * 185.14417 * 16 14 13 37 37 H 1.09007 * 109.47028 * 305.14028 * 16 14 13 38 38 H 0.97003 * 120.00013 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0342 0.0914 -0.0015 6 7 4.2765 2.2968 0.0049 7 6 5.6704 2.1878 0.1000 8 6 6.3269 1.1223 -0.4967 9 6 7.7026 1.0199 -0.4071 10 6 8.4274 1.9714 0.2873 11 6 7.7814 3.0339 0.8902 12 6 6.4011 3.1481 0.8003 13 16 5.5743 4.5011 1.5684 14 6 6.9427 5.5057 2.2080 15 1 7.6771 5.6643 1.4182 16 6 6.4048 6.8569 2.6831 17 6 7.5940 4.7900 3.3632 18 1 7.2223 3.8270 3.6806 19 6 8.6653 5.3642 4.0142 20 7 9.1189 6.5362 3.6267 21 14 9.4731 4.4768 5.4458 22 1 8.7804 3.1847 5.6816 23 1 10.9013 4.2226 5.1281 24 1 9.3795 5.3180 6.6660 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.6887 1.8463 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8615 3.1714 -0.0568 31 1 5.7638 0.3745 -1.0355 32 1 8.2126 0.1921 -0.8770 33 1 9.5015 1.8840 0.3583 34 1 8.3504 3.7749 1.4320 35 1 5.7399 6.7047 3.5332 36 1 7.2369 7.4944 2.9821 37 1 5.8545 7.3343 1.8722 38 1 9.8723 6.9404 4.0850 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066801410.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:59 Heat of formation + Delta-G solvation = -55.496999 kcal Electronic energy + Delta-G solvation = -21087.702402 eV Core-core repulsion = 17828.603636 eV Total energy + Delta-G solvation = -3259.098766 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.30425 -38.36918 -37.32310 -34.64868 -34.11697 -30.68661 -30.26955 -30.13843 -28.20223 -26.01221 -25.43465 -22.76348 -22.37535 -21.21156 -20.21623 -17.85000 -17.25473 -16.69789 -16.47304 -16.41655 -15.99706 -15.18322 -15.00238 -14.80363 -14.29445 -13.93243 -13.50800 -13.42634 -13.12668 -12.91731 -12.70192 -12.29148 -11.84449 -11.72283 -11.61983 -11.32328 -11.03268 -10.93219 -10.56047 -10.43186 -10.31216 -10.04542 -10.00764 -9.58648 -9.45305 -9.07444 -8.96365 -8.56639 -7.91253 -6.60158 -6.19263 -4.33569 1.63150 1.89384 2.46766 2.63017 2.84405 3.19034 3.28210 3.33498 3.57198 3.92649 4.24882 4.28642 4.61048 4.85640 4.95072 5.06296 5.06672 5.12228 5.39959 5.45905 5.53339 5.72918 5.93870 6.03604 6.40224 6.51450 6.63547 6.64969 6.69069 6.72125 6.78956 6.95470 7.07469 7.24360 7.46908 7.51609 7.53041 7.74176 7.94721 8.19094 8.68809 9.31656 10.79846 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.018649 B = 0.004246 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.084366 B = 6592.347599 C = 7154.849501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.045 3.955 4 C 0.512 3.488 5 O -0.505 6.505 6 N -0.660 5.660 7 C 0.141 3.859 8 C -0.114 4.114 9 C -0.124 4.124 10 C -0.120 4.120 11 C -0.101 4.101 12 C -0.075 4.075 13 S -0.194 6.194 14 C 0.097 3.903 15 H 0.052 0.948 16 C -0.125 4.125 17 C -0.521 4.521 18 H 0.069 0.931 19 C 0.071 3.929 20 N -0.886 5.886 21 Si 0.896 3.104 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.282 1.282 25 H 0.045 0.955 26 H 0.043 0.957 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.411 0.589 31 H 0.135 0.865 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.159 0.841 35 H 0.039 0.961 36 H 0.099 0.901 37 H 0.020 0.980 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.165 -5.607 -8.320 15.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.035 4.035 4 C 0.298 3.702 5 O -0.379 6.379 6 N -0.307 5.307 7 C 0.041 3.959 8 C -0.135 4.135 9 C -0.146 4.146 10 C -0.141 4.141 11 C -0.125 4.125 12 C -0.191 4.191 13 S 0.053 5.947 14 C -0.030 4.030 15 H 0.070 0.930 16 C -0.185 4.185 17 C -0.560 4.560 18 H 0.087 0.913 19 C -0.134 4.134 20 N -0.523 5.523 21 Si 0.724 3.276 22 H -0.194 1.194 23 H -0.207 1.207 24 H -0.208 1.208 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.248 0.752 31 H 0.152 0.848 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.176 0.824 35 H 0.058 0.942 36 H 0.117 0.883 37 H 0.039 0.961 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.847 -6.095 -8.113 15.599 hybrid contribution 1.381 0.052 0.793 1.594 sum -10.466 -6.043 -7.320 14.129 Atomic orbital electron populations 1.22842 0.80345 1.03280 1.00199 1.88012 1.19795 1.25131 1.95457 1.22200 0.91163 0.87069 1.03045 1.20307 0.88736 0.84413 0.76698 1.90718 1.74184 1.26388 1.46617 1.43285 1.05077 1.09633 1.72701 1.17174 0.81446 0.97316 0.99936 1.21018 0.94349 0.97894 1.00235 1.20944 0.93464 0.99337 1.00863 1.21100 0.99723 0.94792 0.98439 1.21737 0.92809 0.99489 0.98494 1.21510 0.96813 0.99861 1.00876 1.84481 1.21425 1.21688 1.67150 1.21111 0.90231 0.92858 0.98849 0.93015 1.21647 1.01268 0.97164 0.98374 1.21309 1.14640 1.05132 1.14878 0.91293 1.24965 0.96429 0.94870 0.97111 1.69873 1.25634 1.15814 1.41000 0.86433 0.79216 0.80035 0.81958 1.19414 1.20726 1.20762 0.93674 0.93807 0.89112 0.89653 0.90017 0.75213 0.84761 0.86368 0.86249 0.82406 0.94176 0.88305 0.96078 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.35 16 2 O -0.37 -4.61 10.24 -55.14 -0.56 -5.18 16 3 C 0.05 0.49 6.42 36.00 0.23 0.72 16 4 C 0.51 7.76 7.75 -10.99 -0.09 7.67 16 5 O -0.51 -9.61 13.92 -14.37 -0.20 -9.81 16 6 N -0.66 -9.99 5.02 -9.71 -0.05 -10.03 16 7 C 0.14 2.56 6.32 -83.43 -0.53 2.04 16 8 C -0.11 -2.00 8.70 -39.43 -0.34 -2.34 16 9 C -0.12 -2.04 10.04 -39.55 -0.40 -2.44 16 10 C -0.12 -2.10 10.04 -39.57 -0.40 -2.50 16 11 C -0.10 -2.05 8.85 -39.39 -0.35 -2.40 16 12 C -0.08 -1.50 6.11 -38.90 -0.24 -1.74 16 13 S -0.19 -3.91 20.11 -107.50 -2.16 -6.08 16 14 C 0.10 2.25 2.02 -27.89 -0.06 2.20 16 15 H 0.05 1.29 7.34 -51.92 -0.38 0.90 16 16 C -0.12 -2.79 8.90 37.15 0.33 -2.45 16 17 C -0.52 -13.24 6.47 -34.44 -0.22 -13.46 16 18 H 0.07 1.84 7.71 -52.49 -0.40 1.43 16 19 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 20 N -0.89 -23.26 11.38 55.43 0.63 -22.63 16 21 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.41 5.26 7.97 -40.82 -0.33 4.93 16 31 H 0.13 2.34 6.19 -52.49 -0.32 2.02 16 32 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 33 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 34 H 0.16 3.55 4.82 -52.49 -0.25 3.29 16 35 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.10 2.39 6.23 -51.93 -0.32 2.07 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 LS Contribution 331.13 15.07 4.99 4.99 Total: -1.00 -29.98 331.13 -8.36 -38.34 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -4.95 Total: 6.67 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -1.04 Total: -11.65 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: 0.58 Total: -32.66 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.76 Total: -14.98 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: -3.91 SS G_CDS: -2.16 Total: -6.08 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.98 -8.36 -38.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066801410.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.154 kcal (2) G-P(sol) polarization free energy of solvation -29.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds