Wall clock time and date at job start Tue Mar 31 2020 07:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00063 * 2 1 4 4 C 1.50696 * 109.47400 * 180.02562 * 3 2 1 5 5 O 1.21305 * 119.99960 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00518 * 180.27811 * 4 3 2 7 7 C 1.40135 * 120.00349 * 175.47998 * 6 4 3 8 8 C 1.38650 * 120.10194 * 34.52583 * 7 6 4 9 9 C 1.38246 * 120.01302 * 179.69892 * 8 7 6 10 10 C 1.38302 * 120.20767 * 0.59669 * 9 8 7 11 11 C 1.38197 * 120.19811 * 359.68026 * 10 9 8 12 12 C 1.38789 * 119.99182 * 0.02562 * 11 10 9 13 13 S 1.76195 * 120.10568 * 179.97438 * 12 11 10 14 14 C 1.81404 * 103.00230 * 4.48210 * 13 12 11 15 15 H 1.09002 * 109.46867 * 49.60901 * 14 13 12 16 16 C 1.52993 * 109.46992 * 169.60994 * 14 13 12 17 17 C 1.50694 * 109.46902 * 289.60988 * 14 13 12 18 18 H 1.08000 * 120.00087 * 0.02562 * 17 14 13 19 19 C 1.37880 * 119.99871 * 179.97438 * 17 14 13 20 20 N 1.31515 * 119.99842 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 120.00004 * 180.02562 * 19 17 14 22 22 H 1.48492 * 109.47254 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47043 * 120.00039 * 21 19 17 24 24 H 1.48502 * 109.46993 * 239.99995 * 21 19 17 25 25 H 1.08996 * 109.46898 * 299.99387 * 1 2 3 26 26 H 1.09003 * 109.46920 * 59.99675 * 1 2 3 27 27 H 1.09002 * 109.46508 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46746 * 60.00291 * 3 2 1 29 29 H 1.08996 * 109.47347 * 300.00390 * 3 2 1 30 30 H 0.97003 * 119.99799 * 355.48373 * 6 4 3 31 31 H 1.08001 * 119.99337 * 359.97438 * 8 7 6 32 32 H 1.07994 * 119.90126 * 180.32234 * 9 8 7 33 33 H 1.07995 * 119.90327 * 179.70006 * 10 9 8 34 34 H 1.08002 * 120.00502 * 179.97438 * 11 10 9 35 35 H 1.08997 * 109.47238 * 65.14505 * 16 14 13 36 36 H 1.09004 * 109.46823 * 185.14417 * 16 14 13 37 37 H 1.09007 * 109.47028 * 305.14028 * 16 14 13 38 38 H 0.97003 * 120.00013 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0342 0.0914 -0.0015 6 7 4.2765 2.2968 0.0049 7 6 5.6704 2.1878 0.1000 8 6 6.3269 1.1223 -0.4967 9 6 7.7026 1.0199 -0.4071 10 6 8.4274 1.9714 0.2873 11 6 7.7814 3.0339 0.8902 12 6 6.4011 3.1481 0.8003 13 16 5.5743 4.5011 1.5684 14 6 6.9427 5.5057 2.2080 15 1 7.6771 5.6643 1.4182 16 6 6.4048 6.8569 2.6831 17 6 7.5940 4.7900 3.3632 18 1 7.2223 3.8270 3.6806 19 6 8.6653 5.3642 4.0142 20 7 9.1189 6.5362 3.6267 21 14 9.4731 4.4768 5.4458 22 1 8.7804 3.1847 5.6816 23 1 10.9013 4.2226 5.1281 24 1 9.3795 5.3180 6.6660 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.6887 1.8463 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8615 3.1714 -0.0568 31 1 5.7638 0.3745 -1.0355 32 1 8.2126 0.1921 -0.8770 33 1 9.5015 1.8840 0.3583 34 1 8.3504 3.7749 1.4320 35 1 5.7399 6.7047 3.5332 36 1 7.2369 7.4944 2.9821 37 1 5.8545 7.3343 1.8722 38 1 9.8723 6.9404 4.0850 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066801410.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:58 Heat of formation + Delta-G solvation = -72.665772 kcal Electronic energy + Delta-G solvation = -21088.446896 eV Core-core repulsion = 17828.603636 eV Total energy + Delta-G solvation = -3259.843260 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.54821 -39.56794 -38.32660 -36.24941 -35.73046 -32.45717 -31.81494 -31.36131 -29.19367 -27.37589 -26.75081 -24.19990 -23.85201 -22.84061 -21.49649 -19.13136 -18.52354 -18.35530 -17.91356 -17.31610 -17.12124 -16.88491 -16.11456 -16.00297 -15.83438 -15.26711 -15.03179 -14.96057 -14.66406 -14.07820 -14.00758 -13.47054 -13.41330 -13.18406 -12.92516 -12.85196 -12.59511 -12.37030 -12.33237 -12.26849 -11.85388 -11.41912 -11.27569 -10.93316 -10.82465 -10.76601 -10.54170 -10.43674 -9.31243 -8.32066 -7.99932 -6.34774 0.23951 0.43704 0.92449 1.36867 1.41476 1.44593 1.51249 1.74604 1.86251 2.38701 2.83179 3.06830 3.07951 3.59697 4.02494 4.16056 4.21267 4.23830 4.43106 4.52839 4.57703 4.59248 4.59739 4.66326 4.84382 4.88720 4.89926 5.01474 5.26990 5.33629 5.36708 5.51722 5.61276 5.64297 5.77927 5.99286 6.04293 6.08527 6.37172 6.67581 7.02270 7.31849 8.82994 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.018649 B = 0.004246 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.084366 B = 6592.347599 C = 7154.849501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.051 3.949 4 C 0.508 3.492 5 O -0.549 6.549 6 N -0.654 5.654 7 C 0.140 3.860 8 C -0.121 4.121 9 C -0.112 4.112 10 C -0.123 4.123 11 C -0.122 4.122 12 C -0.102 4.102 13 S -0.166 6.166 14 C 0.090 3.910 15 H 0.029 0.971 16 C -0.115 4.115 17 C -0.524 4.524 18 H 0.051 0.949 19 C 0.033 3.967 20 N -0.906 5.906 21 Si 0.948 3.052 22 H -0.276 1.276 23 H -0.277 1.277 24 H -0.277 1.277 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.119 0.881 30 H 0.422 0.578 31 H 0.138 0.862 32 H 0.154 0.846 33 H 0.141 0.859 34 H 0.130 0.870 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.043 0.957 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.417 -6.432 -8.925 16.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C -0.028 4.028 4 C 0.297 3.703 5 O -0.426 6.426 6 N -0.302 5.302 7 C 0.040 3.960 8 C -0.143 4.143 9 C -0.133 4.133 10 C -0.143 4.143 11 C -0.146 4.146 12 C -0.217 4.217 13 S 0.080 5.920 14 C -0.038 4.038 15 H 0.047 0.953 16 C -0.175 4.175 17 C -0.563 4.563 18 H 0.070 0.930 19 C -0.169 4.169 20 N -0.545 5.545 21 Si 0.774 3.226 22 H -0.201 1.201 23 H -0.202 1.202 24 H -0.203 1.203 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.114 0.886 28 H 0.126 0.874 29 H 0.137 0.863 30 H 0.261 0.739 31 H 0.156 0.844 32 H 0.171 0.829 33 H 0.159 0.841 34 H 0.148 0.852 35 H 0.055 0.945 36 H 0.096 0.904 37 H 0.062 0.938 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.124 -6.901 -8.728 17.206 hybrid contribution 1.728 0.213 0.895 1.958 sum -11.396 -6.688 -7.833 15.361 Atomic orbital electron populations 1.23060 0.78010 1.04287 1.01773 1.87955 1.22350 1.26210 1.95835 1.22296 0.87560 0.87171 1.05813 1.21196 0.90617 0.83431 0.75045 1.90689 1.75332 1.27914 1.48617 1.43316 1.04013 1.10555 1.72315 1.17304 0.82925 0.96726 0.99080 1.21227 0.95049 0.97719 1.00265 1.21319 0.93098 0.99467 0.99382 1.21329 1.00944 0.94069 0.97969 1.21603 0.93126 1.00161 0.99661 1.21607 0.97069 1.00638 1.02393 1.84078 1.19150 1.21442 1.67309 1.20912 0.91266 0.93951 0.97637 0.95331 1.21493 1.00517 0.96503 0.98972 1.21328 1.15003 1.04500 1.15477 0.93036 1.25542 0.96909 0.95462 0.99001 1.69956 1.26007 1.16629 1.41860 0.85637 0.78443 0.78755 0.79736 1.20071 1.20220 1.20251 0.92412 0.91835 0.88555 0.87408 0.86326 0.73916 0.84448 0.82878 0.84091 0.85211 0.94454 0.90400 0.93816 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 11.01 113.37 1.25 1.56 16 2 O -0.40 -9.38 10.24 -129.95 -1.33 -10.71 16 3 C 0.05 0.96 6.42 71.23 0.46 1.42 16 4 C 0.51 14.63 7.75 87.66 0.68 15.31 16 5 O -0.55 -20.48 13.92 15.93 0.22 -20.26 16 6 N -0.65 -18.90 5.02 -303.00 -1.52 -20.42 16 7 C 0.14 4.98 6.32 38.22 0.24 5.23 16 8 C -0.12 -4.11 8.70 22.37 0.19 -3.91 16 9 C -0.11 -3.44 10.04 22.29 0.22 -3.22 16 10 C -0.12 -4.19 10.04 22.28 0.22 -3.97 16 11 C -0.12 -4.99 8.85 22.39 0.20 -4.79 16 12 C -0.10 -4.07 6.11 22.71 0.14 -3.93 16 13 S -0.17 -6.66 20.11 -56.49 -1.14 -7.80 16 14 C 0.09 4.29 2.02 29.84 0.06 4.35 16 15 H 0.03 1.48 7.34 -2.39 -0.02 1.46 16 16 C -0.12 -5.17 8.90 71.98 0.64 -4.53 16 17 C -0.52 -27.21 6.47 25.60 0.17 -27.05 16 18 H 0.05 2.81 7.71 -2.91 -0.02 2.79 16 19 C 0.03 1.71 5.30 84.66 0.45 2.16 16 20 N -0.91 -48.35 11.38 21.45 0.24 -48.11 16 21 Si 0.95 42.18 29.54 68.60 2.03 44.21 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 23 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 24 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 25 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.10 1.10 8.14 -2.39 -0.02 1.09 16 28 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.42 10.04 7.97 -92.71 -0.74 9.31 16 31 H 0.14 4.63 6.19 -2.91 -0.02 4.61 16 32 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 33 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 34 H 0.13 6.07 4.82 -2.91 -0.01 6.06 16 35 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.08 3.83 6.23 -2.38 -0.01 3.82 16 37 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 Total: -1.00 -65.71 331.13 3.77 -61.95 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.34 Total: 22.52 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: 4.92 Total: -21.38 kcal Atomic # 7 Polarization: -67.25 SS G_CDS: -1.28 Total: -68.53 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -1.11 Total: -30.97 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 16 Polarization: -6.66 SS G_CDS: -1.14 Total: -7.80 kcal Total: -65.71 3.77 -61.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066801410.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.718 kcal (2) G-P(sol) polarization free energy of solvation -65.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds