Wall clock time and date at job start Tue Mar 31 2020 07:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 113.99770 * 2 1 4 4 C 1.50711 * 109.46805 * 179.97438 * 3 2 1 5 5 O 1.21296 * 119.99900 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99814 * 179.97438 * 4 3 2 7 7 C 1.40139 * 119.99857 * 185.06206 * 6 4 3 8 8 C 1.38651 * 120.10087 * 19.75914 * 7 6 4 9 9 C 1.38250 * 120.00708 * 179.72362 * 8 7 6 10 10 C 1.38298 * 120.21079 * 0.28066 * 9 8 7 11 11 C 1.38195 * 120.20117 * 359.97438 * 10 9 8 12 12 C 1.38788 * 119.98828 * 0.02562 * 11 10 9 13 13 S 1.76200 * 120.10268 * 180.02562 * 12 11 10 14 14 C 1.81398 * 103.00156 * 354.54680 * 13 12 11 15 15 H 1.09005 * 109.46644 * 49.92356 * 14 13 12 16 16 C 1.52993 * 109.47622 * 289.91997 * 14 13 12 17 17 C 1.50701 * 109.47078 * 169.91989 * 14 13 12 18 18 H 1.07998 * 120.00360 * 5.45692 * 17 14 13 19 19 C 1.37878 * 119.99969 * 185.46210 * 17 14 13 20 20 N 1.31518 * 119.99646 * 199.26214 * 19 17 14 21 21 Si 1.86798 * 120.00268 * 19.25535 * 19 17 14 22 22 H 1.48494 * 109.47187 * 95.14397 * 21 19 17 23 23 H 1.48495 * 109.47261 * 215.14716 * 21 19 17 24 24 H 1.48509 * 109.46826 * 335.14357 * 21 19 17 25 25 H 1.08994 * 109.47216 * 60.00063 * 1 2 3 26 26 H 1.09009 * 109.47166 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47485 * 300.00050 * 1 2 3 28 28 H 1.08994 * 109.47308 * 60.00249 * 3 2 1 29 29 H 1.09001 * 109.47144 * 299.99385 * 3 2 1 30 30 H 0.97004 * 120.00109 * 5.06325 * 6 4 3 31 31 H 1.07994 * 119.99437 * 0.02562 * 8 7 6 32 32 H 1.07993 * 119.89325 * 180.25932 * 9 8 7 33 33 H 1.08000 * 119.89774 * 179.97438 * 10 9 8 34 34 H 1.08000 * 120.00821 * 180.02562 * 11 10 9 35 35 H 1.09007 * 109.46943 * 56.64966 * 16 14 13 36 36 H 1.08997 * 109.47665 * 176.65020 * 16 14 13 37 37 H 1.09003 * 109.47517 * 296.65579 * 16 14 13 38 38 H 0.97005 * 119.99685 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 8 4.0342 0.0913 0.0015 6 7 4.2765 2.2967 0.0002 7 6 5.6696 2.1887 -0.1063 8 6 6.2406 1.0309 -0.6122 9 6 7.6150 0.9286 -0.7218 10 6 8.4248 1.9762 -0.3226 11 6 7.8651 3.1321 0.1878 12 6 6.4864 3.2437 0.3015 13 16 5.7696 4.7164 0.9512 14 6 7.2164 5.6818 1.4661 15 1 7.9374 5.7194 0.6494 16 6 7.8619 5.0220 2.6863 17 6 6.7858 7.0817 1.8210 18 1 5.7368 7.3382 1.8297 19 6 7.7312 8.0351 2.1347 20 7 7.3806 9.1155 2.7975 21 14 9.5099 7.7921 1.6183 22 1 9.7514 8.4912 0.3307 23 1 10.4085 8.3498 2.6607 24 1 9.7836 6.3418 1.4531 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6886 1.8463 0.8899 29 1 1.6886 1.8463 -0.8900 30 1 3.8620 3.1707 0.0737 31 1 5.6115 0.2109 -0.9253 32 1 8.0576 0.0277 -1.1200 33 1 9.4978 1.8907 -0.4100 34 1 8.5004 3.9485 0.4982 35 1 8.1195 3.9901 2.4476 36 1 8.7649 5.5680 2.9595 37 1 7.1612 5.0378 3.5211 38 1 8.0458 9.7861 3.0184 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066801411.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:01 Heat of formation + Delta-G solvation = -45.136792 kcal Electronic energy + Delta-G solvation = -20956.141868 eV Core-core repulsion = 17697.492354 eV Total energy + Delta-G solvation = -3258.649514 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.56386 -38.55309 -37.47666 -34.86074 -34.14849 -31.60673 -30.43549 -30.38529 -28.34727 -26.09070 -25.36328 -23.06297 -22.55183 -21.31647 -20.46700 -18.22558 -17.44431 -17.06816 -16.68652 -16.50298 -16.21012 -15.23212 -15.20631 -14.87142 -14.38914 -14.11460 -13.76514 -13.69240 -13.23282 -13.10211 -12.78887 -12.50634 -12.22741 -12.19007 -11.85115 -11.69095 -11.38829 -11.15024 -10.64226 -10.59265 -10.42762 -10.11590 -9.87442 -9.79288 -9.58657 -9.28751 -9.17179 -8.62243 -8.08965 -6.72580 -6.35943 -4.33095 1.38379 1.58948 2.19513 2.51220 2.64122 3.11880 3.21013 3.24674 3.32396 3.81747 4.00374 4.20516 4.45572 4.79416 4.85958 4.94145 5.02012 5.06564 5.16303 5.24905 5.35605 5.47637 5.69342 5.70423 6.06194 6.12537 6.25509 6.29043 6.33613 6.46605 6.58171 6.67565 6.68798 6.76841 7.07781 7.20245 7.33659 7.37484 8.00335 8.13501 8.68363 9.24461 10.75529 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.020826 B = 0.004071 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.171448 B = 6877.106133 C = 8026.607690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.513 3.487 5 O -0.502 6.502 6 N -0.657 5.657 7 C 0.154 3.846 8 C -0.125 4.125 9 C -0.119 4.119 10 C -0.121 4.121 11 C -0.117 4.117 12 C -0.102 4.102 13 S -0.139 6.139 14 C 0.065 3.935 15 H 0.049 0.951 16 C -0.147 4.147 17 C -0.523 4.523 18 H 0.084 0.916 19 C 0.092 3.908 20 N -0.875 5.875 21 Si 0.863 3.137 22 H -0.275 1.275 23 H -0.282 1.282 24 H -0.258 1.258 25 H 0.044 0.956 26 H 0.091 0.909 27 H 0.045 0.955 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.415 0.585 31 H 0.153 0.847 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.133 0.867 35 H 0.034 0.966 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.281 -14.081 -6.563 17.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.036 4.036 4 C 0.300 3.700 5 O -0.376 6.376 6 N -0.303 5.303 7 C 0.053 3.947 8 C -0.146 4.146 9 C -0.140 4.140 10 C -0.141 4.141 11 C -0.142 4.142 12 C -0.218 4.218 13 S 0.108 5.892 14 C -0.064 4.064 15 H 0.066 0.934 16 C -0.206 4.206 17 C -0.561 4.561 18 H 0.102 0.898 19 C -0.114 4.114 20 N -0.510 5.510 21 Si 0.689 3.311 22 H -0.201 1.201 23 H -0.207 1.207 24 H -0.182 1.182 25 H 0.063 0.937 26 H 0.110 0.890 27 H 0.064 0.936 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.253 0.747 31 H 0.170 0.830 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.150 0.850 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.041 -14.420 -6.331 17.683 hybrid contribution 1.924 0.546 -0.234 2.014 sum -6.117 -13.874 -6.566 16.523 Atomic orbital electron populations 1.22853 0.80171 1.03345 1.00317 1.87999 1.19940 1.24998 1.95488 1.22214 0.90859 0.87219 1.03317 1.20354 0.88912 0.84187 0.76558 1.90635 1.73898 1.26592 1.46517 1.43395 1.05138 1.10083 1.71657 1.17219 0.81439 0.94942 1.01054 1.21514 0.95598 0.97657 0.99869 1.20981 0.93115 0.98728 1.01224 1.21030 0.99611 0.93492 0.99989 1.21201 0.93049 0.99035 1.00888 1.21801 0.96278 0.99221 1.04459 1.85016 1.19889 1.10399 1.73896 1.21327 0.91153 0.97173 0.96724 0.93361 1.22441 1.00785 0.97880 0.99530 1.20267 0.95916 0.90653 1.49271 0.89834 1.24769 0.98501 0.94913 0.93254 1.69962 1.35411 1.10695 1.34939 0.87115 0.85381 0.79344 0.79301 1.20071 1.20740 1.18198 0.93707 0.89050 0.93608 0.89582 0.89668 0.74741 0.82959 0.86043 0.86194 0.84953 0.94663 0.92685 0.91931 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.37 -4.24 10.24 -55.14 -0.56 -4.81 16 3 C 0.04 0.43 6.42 36.01 0.23 0.66 16 4 C 0.51 7.08 7.76 -10.98 -0.09 7.00 16 5 O -0.50 -8.64 13.40 -14.37 -0.19 -8.83 16 6 N -0.66 -9.26 5.24 -9.70 -0.05 -9.31 16 7 C 0.15 2.55 6.51 -83.43 -0.54 2.01 16 8 C -0.12 -1.98 8.79 -39.42 -0.35 -2.33 16 9 C -0.12 -1.70 10.04 -39.55 -0.40 -2.09 16 10 C -0.12 -1.78 10.04 -39.58 -0.40 -2.18 16 11 C -0.12 -2.02 8.04 -39.39 -0.32 -2.33 16 12 C -0.10 -1.83 6.02 -38.90 -0.23 -2.06 16 13 S -0.14 -2.73 19.88 -107.50 -2.14 -4.86 16 14 C 0.06 1.45 1.52 -27.89 -0.04 1.41 16 15 H 0.05 1.08 5.25 -51.92 -0.27 0.81 16 16 C -0.15 -3.08 8.20 37.15 0.30 -2.78 16 17 C -0.52 -13.81 8.97 -34.44 -0.31 -14.12 16 18 H 0.08 2.41 7.96 -52.49 -0.42 2.00 16 19 C 0.09 2.48 5.32 -17.82 -0.09 2.38 16 20 N -0.87 -25.03 13.96 55.43 0.77 -24.26 16 21 Si 0.86 19.78 25.96 -169.99 -4.41 15.36 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.26 -5.51 5.65 56.52 0.32 -5.20 16 25 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.09 0.55 8.14 -51.92 -0.42 0.13 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.42 5.19 7.52 -40.82 -0.31 4.88 16 31 H 0.15 2.46 5.41 -52.49 -0.28 2.18 16 32 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.13 2.37 4.93 -52.49 -0.26 2.11 16 35 H 0.03 0.66 6.06 -51.92 -0.31 0.35 16 36 H 0.05 1.16 5.41 -51.93 -0.28 0.88 16 37 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 322.96 15.07 4.87 4.87 Total: -1.00 -31.31 322.96 -7.57 -38.88 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -4.73 Total: 6.07 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -1.12 Total: -13.11 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.72 Total: -33.57 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.76 Total: -13.63 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.41 Total: 15.36 kcal Atomic # 16 Polarization: -2.73 SS G_CDS: -2.14 Total: -4.86 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.31 -7.57 -38.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066801411.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.254 kcal (2) G-P(sol) polarization free energy of solvation -31.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds