Wall clock time and date at job start Tue Mar 31 2020 07:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 113.99770 * 2 1 4 4 C 1.50711 * 109.46805 * 179.97438 * 3 2 1 5 5 O 1.21296 * 119.99900 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99814 * 179.97438 * 4 3 2 7 7 C 1.40139 * 119.99857 * 185.06206 * 6 4 3 8 8 C 1.38651 * 120.10087 * 19.75914 * 7 6 4 9 9 C 1.38250 * 120.00708 * 179.72362 * 8 7 6 10 10 C 1.38298 * 120.21079 * 0.28066 * 9 8 7 11 11 C 1.38195 * 120.20117 * 359.97438 * 10 9 8 12 12 C 1.38788 * 119.98828 * 0.02562 * 11 10 9 13 13 S 1.76200 * 120.10268 * 180.02562 * 12 11 10 14 14 C 1.81398 * 103.00156 * 354.54680 * 13 12 11 15 15 H 1.09005 * 109.46644 * 49.92356 * 14 13 12 16 16 C 1.52993 * 109.47622 * 289.91997 * 14 13 12 17 17 C 1.50701 * 109.47078 * 169.91989 * 14 13 12 18 18 H 1.07998 * 120.00360 * 5.45692 * 17 14 13 19 19 C 1.37878 * 119.99969 * 185.46210 * 17 14 13 20 20 N 1.31518 * 119.99646 * 199.26214 * 19 17 14 21 21 Si 1.86798 * 120.00268 * 19.25535 * 19 17 14 22 22 H 1.48494 * 109.47187 * 95.14397 * 21 19 17 23 23 H 1.48495 * 109.47261 * 215.14716 * 21 19 17 24 24 H 1.48509 * 109.46826 * 335.14357 * 21 19 17 25 25 H 1.08994 * 109.47216 * 60.00063 * 1 2 3 26 26 H 1.09009 * 109.47166 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47485 * 300.00050 * 1 2 3 28 28 H 1.08994 * 109.47308 * 60.00249 * 3 2 1 29 29 H 1.09001 * 109.47144 * 299.99385 * 3 2 1 30 30 H 0.97004 * 120.00109 * 5.06325 * 6 4 3 31 31 H 1.07994 * 119.99437 * 0.02562 * 8 7 6 32 32 H 1.07993 * 119.89325 * 180.25932 * 9 8 7 33 33 H 1.08000 * 119.89774 * 179.97438 * 10 9 8 34 34 H 1.08000 * 120.00821 * 180.02562 * 11 10 9 35 35 H 1.09007 * 109.46943 * 56.64966 * 16 14 13 36 36 H 1.08997 * 109.47665 * 176.65020 * 16 14 13 37 37 H 1.09003 * 109.47517 * 296.65579 * 16 14 13 38 38 H 0.97005 * 119.99685 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 8 4.0342 0.0913 0.0015 6 7 4.2765 2.2967 0.0002 7 6 5.6696 2.1887 -0.1063 8 6 6.2406 1.0309 -0.6122 9 6 7.6150 0.9286 -0.7218 10 6 8.4248 1.9762 -0.3226 11 6 7.8651 3.1321 0.1878 12 6 6.4864 3.2437 0.3015 13 16 5.7696 4.7164 0.9512 14 6 7.2164 5.6818 1.4661 15 1 7.9374 5.7194 0.6494 16 6 7.8619 5.0220 2.6863 17 6 6.7858 7.0817 1.8210 18 1 5.7368 7.3382 1.8297 19 6 7.7312 8.0351 2.1347 20 7 7.3806 9.1155 2.7975 21 14 9.5099 7.7921 1.6183 22 1 9.7514 8.4912 0.3307 23 1 10.4085 8.3498 2.6607 24 1 9.7836 6.3418 1.4531 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6886 1.8463 0.8899 29 1 1.6886 1.8463 -0.8900 30 1 3.8620 3.1707 0.0737 31 1 5.6115 0.2109 -0.9253 32 1 8.0576 0.0277 -1.1200 33 1 9.4978 1.8907 -0.4100 34 1 8.5004 3.9485 0.4982 35 1 8.1195 3.9901 2.4476 36 1 8.7649 5.5680 2.9595 37 1 7.1612 5.0378 3.5211 38 1 8.0458 9.7861 3.0184 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066801411.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:01 Heat of formation + Delta-G solvation = -64.921037 kcal Electronic energy + Delta-G solvation = -20956.999777 eV Core-core repulsion = 17697.492354 eV Total energy + Delta-G solvation = -3259.507423 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.68573 -39.62363 -38.36671 -36.28054 -35.77702 -33.44200 -31.79293 -31.44451 -29.22584 -27.29612 -26.76965 -24.28920 -23.83895 -22.98418 -21.59517 -19.58046 -18.78259 -18.39781 -18.01536 -17.36416 -17.12880 -16.84491 -16.22504 -16.00307 -15.82135 -15.44355 -15.16915 -15.02737 -14.60508 -14.35390 -14.10823 -13.87906 -13.71075 -13.27121 -13.08541 -12.92728 -12.78223 -12.43135 -12.34741 -12.05663 -11.75765 -11.66384 -11.49704 -10.86474 -10.80022 -10.77478 -10.70436 -10.50729 -9.31263 -8.41916 -8.18689 -6.43790 0.17824 0.34053 0.71943 1.31201 1.37118 1.44030 1.44457 1.64248 1.76647 2.28121 2.78709 2.91488 3.02868 3.52007 3.88758 4.13291 4.17322 4.20405 4.32970 4.37541 4.47527 4.50362 4.51293 4.52270 4.58435 4.64412 4.86454 4.88311 4.96576 5.12779 5.28414 5.35222 5.42173 5.44773 5.57373 5.96540 6.03275 6.06542 6.31360 6.55954 6.93288 7.17073 8.73478 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.020826 B = 0.004071 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.171448 B = 6877.106133 C = 8026.607690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.402 6.402 3 C 0.048 3.952 4 C 0.510 3.490 5 O -0.540 6.540 6 N -0.655 5.655 7 C 0.148 3.852 8 C -0.137 4.137 9 C -0.107 4.107 10 C -0.117 4.117 11 C -0.129 4.129 12 C -0.121 4.121 13 S -0.145 6.145 14 C 0.062 3.938 15 H 0.052 0.948 16 C -0.140 4.140 17 C -0.529 4.529 18 H 0.043 0.957 19 C 0.040 3.960 20 N -0.924 5.924 21 Si 0.924 3.076 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.231 1.231 25 H 0.061 0.939 26 H 0.098 0.902 27 H 0.058 0.942 28 H 0.109 0.891 29 H 0.116 0.884 30 H 0.421 0.579 31 H 0.150 0.850 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.126 0.874 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.378 -15.994 -7.658 18.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.321 6.321 3 C -0.032 4.032 4 C 0.299 3.701 5 O -0.417 6.417 6 N -0.301 5.301 7 C 0.047 3.953 8 C -0.158 4.158 9 C -0.128 4.128 10 C -0.137 4.137 11 C -0.154 4.154 12 C -0.236 4.236 13 S 0.101 5.899 14 C -0.067 4.067 15 H 0.070 0.930 16 C -0.199 4.199 17 C -0.567 4.567 18 H 0.061 0.939 19 C -0.162 4.162 20 N -0.561 5.561 21 Si 0.747 3.253 22 H -0.198 1.198 23 H -0.205 1.205 24 H -0.154 1.154 25 H 0.079 0.921 26 H 0.116 0.884 27 H 0.076 0.924 28 H 0.127 0.873 29 H 0.133 0.867 30 H 0.260 0.740 31 H 0.167 0.833 32 H 0.172 0.828 33 H 0.170 0.830 34 H 0.143 0.857 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.160 -16.346 -7.437 19.333 hybrid contribution 1.518 1.035 0.064 1.838 sum -5.642 -15.311 -7.373 17.906 Atomic orbital electron populations 1.23064 0.78011 1.04353 1.01736 1.87945 1.22317 1.25990 1.95833 1.22317 0.87736 0.87297 1.05801 1.21130 0.90563 0.83309 0.75086 1.90607 1.74917 1.27860 1.48277 1.43458 1.04517 1.10704 1.71387 1.17410 0.82491 0.94751 1.00616 1.21663 0.96592 0.97284 1.00281 1.21387 0.92384 0.99631 0.99368 1.21346 1.01296 0.92364 0.98727 1.21306 0.92635 0.99898 1.01527 1.21738 0.96969 0.98559 1.06371 1.84869 1.18598 1.11605 1.74877 1.21151 0.92520 0.95595 0.97433 0.92974 1.22331 1.00238 0.98998 0.98368 1.20424 0.94192 0.93148 1.48982 0.93914 1.25614 1.03201 0.94505 0.92903 1.70083 1.37218 1.12087 1.36719 0.86130 0.79600 0.80836 0.78778 1.19757 1.20466 1.15390 0.92053 0.88388 0.92359 0.87289 0.86653 0.74037 0.83295 0.82787 0.83045 0.85651 0.92444 0.92772 0.93060 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.54 16 2 O -0.40 -8.73 10.24 -129.94 -1.33 -10.06 16 3 C 0.05 0.85 6.42 71.24 0.46 1.31 16 4 C 0.51 13.60 7.76 87.66 0.68 14.28 16 5 O -0.54 -18.32 13.40 15.96 0.21 -18.10 16 6 N -0.66 -17.90 5.24 -303.00 -1.59 -19.49 16 7 C 0.15 4.74 6.51 38.22 0.25 4.99 16 8 C -0.14 -4.10 8.79 22.37 0.20 -3.90 16 9 C -0.11 -2.70 10.04 22.29 0.22 -2.48 16 10 C -0.12 -3.05 10.04 22.27 0.22 -2.83 16 11 C -0.13 -4.16 8.04 22.39 0.18 -3.98 16 12 C -0.12 -4.20 6.02 22.71 0.14 -4.06 16 13 S -0.15 -5.69 19.88 -56.49 -1.12 -6.81 16 14 C 0.06 2.75 1.52 29.85 0.05 2.79 16 15 H 0.05 2.27 5.25 -2.39 -0.01 2.26 16 16 C -0.14 -5.72 8.20 71.98 0.59 -5.13 16 17 C -0.53 -28.65 8.97 25.60 0.23 -28.43 16 18 H 0.04 2.60 7.96 -2.91 -0.02 2.57 16 19 C 0.04 2.18 5.32 84.65 0.45 2.63 16 20 N -0.92 -54.36 13.96 21.45 0.30 -54.06 16 21 Si 0.92 40.36 25.96 68.60 1.78 42.14 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.23 -9.01 5.65 99.48 0.56 -8.45 16 25 H 0.06 0.53 8.14 -2.39 -0.02 0.52 16 26 H 0.10 1.02 8.14 -2.38 -0.02 1.01 16 27 H 0.06 0.55 8.14 -2.39 -0.02 0.54 16 28 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.42 10.22 7.52 -92.71 -0.70 9.53 16 31 H 0.15 4.65 5.41 -2.91 -0.02 4.63 16 32 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 33 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 34 H 0.13 4.18 4.93 -2.91 -0.01 4.17 16 35 H 0.06 2.07 6.06 -2.38 -0.01 2.05 16 36 H 0.05 2.18 5.41 -2.39 -0.01 2.17 16 37 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.27 14.88 8.31 -92.70 -0.77 14.11 16 Total: -1.00 -69.58 322.96 3.42 -66.16 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.25 Total: 23.48 kcal Atomic # 6 Polarization: -28.18 SS G_CDS: 4.91 Total: -23.27 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: -1.29 Total: -73.55 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -1.12 Total: -28.16 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 1.78 Total: 42.14 kcal Atomic # 16 Polarization: -5.69 SS G_CDS: -1.12 Total: -6.81 kcal Total: -69.58 3.42 -66.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066801411.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.240 kcal (2) G-P(sol) polarization free energy of solvation -69.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds