Wall clock time and date at job start Tue Mar 31 2020 07:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81408 * 102.99888 * 2 1 4 4 H 1.08996 * 109.46700 * 304.99927 * 3 2 1 5 5 C 1.52992 * 109.46848 * 65.00266 * 3 2 1 6 6 C 1.50702 * 109.46918 * 185.00284 * 3 2 1 7 7 O 1.21277 * 120.00103 * 339.99400 * 6 3 2 8 8 N 1.34774 * 119.99837 * 160.00510 * 6 3 2 9 9 C 1.46506 * 119.99871 * 179.97438 * 8 6 3 10 10 C 1.50703 * 109.46697 * 179.97438 * 9 8 6 11 11 C 1.38299 * 119.93216 * 269.72387 * 10 9 8 12 12 C 1.38102 * 120.06797 * 179.72941 * 11 10 9 13 13 C 1.38878 * 119.92723 * 0.57040 * 12 11 10 14 14 O 1.35749 * 120.06871 * 179.68320 * 13 12 11 15 15 C 1.34830 * 117.00415 * 174.48536 * 14 13 12 16 16 H 1.07997 * 119.99905 * 5.05631 * 15 14 13 17 17 C 1.38653 * 120.00153 * 185.06053 * 15 14 13 18 18 N 1.31563 * 120.00075 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99993 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47392 * 89.99761 * 19 17 15 21 21 H 1.48509 * 109.47187 * 209.99588 * 19 17 15 22 22 H 1.48501 * 109.47192 * 329.99203 * 19 17 15 23 23 C 1.38881 * 119.86533 * 359.70385 * 13 12 11 24 24 C 1.38101 * 119.92972 * 359.97438 * 23 13 12 25 25 H 1.08997 * 109.47263 * 299.99608 * 1 2 3 26 26 H 1.09001 * 109.47345 * 59.99941 * 1 2 3 27 27 H 1.08999 * 109.47087 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.47153 * 180.02562 * 5 3 2 29 29 H 1.09004 * 109.47326 * 299.99381 * 5 3 2 30 30 H 1.09000 * 109.47664 * 59.99822 * 5 3 2 31 31 H 0.96997 * 119.99843 * 359.97438 * 8 6 3 32 32 H 1.08999 * 109.47009 * 299.99198 * 9 8 6 33 33 H 1.08997 * 109.47044 * 60.00008 * 9 8 6 34 34 H 1.07995 * 119.96390 * 359.97438 * 11 10 9 35 35 H 1.08000 * 120.03155 * 180.27156 * 12 11 10 36 36 H 0.96995 * 119.99942 * 180.02562 * 18 17 15 37 37 H 1.07999 * 120.03236 * 179.97438 * 23 13 12 38 38 H 1.07993 * 119.96217 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7294 2.2541 -0.8418 5 6 1.7427 2.4015 1.3073 6 6 3.7141 1.9386 -0.1239 7 8 4.4551 1.0201 0.1555 8 7 4.2252 3.1125 -0.5450 9 6 5.6758 3.2790 -0.6649 10 6 5.9829 4.6716 -1.1521 11 6 6.0798 4.9224 -2.5087 12 6 6.3556 6.1987 -2.9585 13 6 6.5475 7.2283 -2.0465 14 8 6.8251 8.4826 -2.4852 15 6 6.8867 9.4568 -1.5552 16 1 6.7998 9.2095 -0.5075 17 6 7.0616 10.7762 -1.9439 18 7 7.1679 11.0775 -3.2201 19 14 7.1477 12.1259 -0.6553 20 1 8.5591 12.3220 -0.2374 21 1 6.6205 13.3909 -1.2274 22 1 6.3317 11.7379 0.5232 23 6 6.4552 6.9721 -0.6846 24 6 6.1725 5.6950 -0.2414 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9875 3.4638 1.3072 29 1 0.6635 2.2779 1.3969 30 1 2.2353 1.9149 2.1492 31 1 3.6325 3.8471 -0.7687 32 1 6.1410 3.1234 0.3084 33 1 6.0675 2.5512 -1.3755 34 1 5.9356 4.1202 -3.2172 35 1 6.4267 6.3948 -4.0181 36 1 7.2905 12.0005 -3.4920 37 1 6.6043 7.7706 0.0270 38 1 6.1011 5.4951 0.8174 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067927781.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:46 Heat of formation + Delta-G solvation = -44.721127 kcal Electronic energy + Delta-G solvation = -20288.293223 eV Core-core repulsion = 17029.661733 eV Total energy + Delta-G solvation = -3258.631489 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.87483 -39.07018 -36.92134 -34.51673 -33.52223 -32.38304 -30.33269 -29.89578 -29.07998 -26.17585 -25.24667 -24.06442 -22.09954 -20.70205 -20.58716 -18.12910 -17.70734 -17.00648 -16.85425 -15.56190 -15.52612 -14.76384 -14.64827 -14.54052 -14.46839 -13.92579 -13.88792 -13.74526 -13.58092 -13.16733 -12.96763 -12.83123 -12.58443 -12.29933 -12.07437 -11.99838 -11.70989 -11.43379 -11.00711 -10.84653 -10.73301 -10.52251 -10.11751 -9.96310 -9.46936 -9.06188 -8.94720 -8.33214 -7.91646 -7.37385 -6.56588 -4.15595 1.20108 2.02823 2.08626 2.23744 2.54911 3.04963 3.06713 3.11602 3.27600 3.87206 4.38687 4.51989 4.54106 4.72137 4.80040 4.84008 4.98131 5.10639 5.14955 5.21413 5.28346 5.37307 5.41532 5.61487 5.70686 5.75641 5.86848 6.07952 6.30354 6.40233 6.55522 6.75869 6.91179 7.09508 7.22459 7.30995 7.45965 7.67163 7.87980 8.11773 8.88651 9.56456 10.60837 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.029244 B = 0.002580 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.226917 B =10849.151370 C =11192.717416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.190 6.190 3 C -0.094 4.094 4 H 0.107 0.893 5 C -0.142 4.142 6 C 0.530 3.470 7 O -0.526 6.526 8 N -0.716 5.716 9 C 0.180 3.820 10 C -0.216 4.216 11 C -0.054 4.054 12 C -0.195 4.195 13 C 0.161 3.839 14 O -0.172 6.172 15 C -0.394 4.394 16 H 0.094 0.906 17 C 0.040 3.960 18 N -0.859 5.859 19 Si 0.942 3.058 20 H -0.272 1.272 21 H -0.277 1.277 22 H -0.267 1.267 23 C -0.237 4.237 24 C -0.050 4.050 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.103 0.897 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.402 0.598 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.272 0.728 37 H 0.128 0.872 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.828 -14.273 6.452 19.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.036 5.964 3 C -0.226 4.226 4 H 0.125 0.875 5 C -0.201 4.201 6 C 0.313 3.687 7 O -0.402 6.402 8 N -0.367 5.367 9 C 0.058 3.942 10 C -0.218 4.218 11 C -0.073 4.073 12 C -0.215 4.215 13 C 0.106 3.894 14 O -0.075 6.075 15 C -0.470 4.470 16 H 0.111 0.889 17 C -0.165 4.165 18 N -0.493 5.493 19 Si 0.767 3.233 20 H -0.198 1.198 21 H -0.202 1.202 22 H -0.191 1.191 23 C -0.256 4.256 24 C -0.069 4.069 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.121 0.879 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.237 0.763 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.131 0.869 35 H 0.137 0.863 36 H 0.082 0.918 37 H 0.146 0.854 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.512 -15.490 6.267 19.741 hybrid contribution -1.122 2.228 0.484 2.542 sum -11.635 -13.262 6.751 18.889 Atomic orbital electron populations 1.23550 0.95844 1.06596 1.04923 1.87435 1.04674 1.06463 1.97865 1.23366 0.97699 0.98115 1.03438 0.87451 1.21995 1.01805 1.01357 0.94991 1.19639 0.88547 0.83027 0.77480 1.90735 1.60398 1.40119 1.48944 1.46273 1.08979 1.14182 1.67312 1.20019 0.79051 0.94203 1.00920 1.19188 1.14631 0.94250 0.93711 1.20538 0.97030 0.95350 0.94334 1.20221 1.10621 0.91751 0.98861 1.19445 0.91199 0.86690 0.92086 1.83978 1.75003 1.12239 1.36272 1.21358 1.52116 0.85038 0.88478 0.88903 1.25328 0.96347 0.97416 0.97379 1.70036 1.44603 1.19882 1.14759 0.85689 0.78953 0.79358 0.79318 1.19765 1.20163 1.19131 1.21159 1.11199 0.97550 0.95730 1.20640 0.96167 0.92090 0.97996 0.90398 0.90531 0.87865 0.90894 0.91376 0.90608 0.76316 0.91423 0.91349 0.86921 0.86342 0.91838 0.85398 0.87389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 10.45 101.05 1.06 0.15 16 2 S -0.19 -2.05 21.04 -107.50 -2.26 -4.31 16 3 C -0.09 -0.92 3.18 -27.89 -0.09 -1.00 16 4 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 5 C -0.14 -1.12 9.08 37.15 0.34 -0.78 16 6 C 0.53 6.84 7.00 -10.99 -0.08 6.76 16 7 O -0.53 -8.86 16.04 5.56 0.09 -8.77 16 8 N -0.72 -8.55 5.55 -61.47 -0.34 -8.89 16 9 C 0.18 2.45 5.80 -5.19 -0.03 2.42 16 10 C -0.22 -3.35 5.25 -104.57 -0.55 -3.90 16 11 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 12 C -0.20 -3.85 9.99 -39.39 -0.39 -4.24 16 13 C 0.16 3.66 6.65 -39.11 -0.26 3.40 16 14 O -0.17 -4.72 9.76 0.05 0.00 -4.71 16 15 C -0.39 -10.56 9.49 30.89 0.29 -10.27 16 16 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 17 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 18 N -0.86 -24.40 13.67 55.48 0.76 -23.64 16 19 Si 0.94 19.75 29.55 -169.99 -5.02 14.73 16 20 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 22 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 23 C -0.24 -4.79 9.17 -39.39 -0.36 -5.15 16 24 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 25 H 0.08 0.42 7.14 -51.93 -0.37 0.05 16 26 H 0.08 0.43 8.14 -51.92 -0.42 0.00 16 27 H 0.10 0.57 8.14 -51.92 -0.42 0.14 16 28 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 29 H 0.07 0.41 6.92 -51.93 -0.36 0.05 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.40 4.14 8.46 -40.82 -0.35 3.80 16 32 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 33 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 34 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 35 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 36 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.13 2.61 5.64 -52.49 -0.30 2.31 16 38 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 340.59 15.07 5.13 5.13 Total: -1.00 -31.39 340.59 -7.58 -38.97 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.00 Total: 5.62 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -0.94 Total: -14.13 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: 0.42 Total: -32.53 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.09 Total: -13.48 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Atomic # 16 Polarization: -2.05 SS G_CDS: -2.26 Total: -4.31 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.39 -7.58 -38.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067927781.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.750 kcal (2) G-P(sol) polarization free energy of solvation -31.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds