Wall clock time and date at job start Tue Mar 31 2020 07:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81408 * 102.99888 * 2 1 4 4 H 1.08996 * 109.46700 * 304.99927 * 3 2 1 5 5 C 1.52992 * 109.46848 * 65.00266 * 3 2 1 6 6 C 1.50702 * 109.46918 * 185.00284 * 3 2 1 7 7 O 1.21277 * 120.00103 * 339.99400 * 6 3 2 8 8 N 1.34774 * 119.99837 * 160.00510 * 6 3 2 9 9 C 1.46506 * 119.99871 * 179.97438 * 8 6 3 10 10 C 1.50703 * 109.46697 * 179.97438 * 9 8 6 11 11 C 1.38299 * 119.93216 * 269.72387 * 10 9 8 12 12 C 1.38102 * 120.06797 * 179.72941 * 11 10 9 13 13 C 1.38878 * 119.92723 * 0.57040 * 12 11 10 14 14 O 1.35749 * 120.06871 * 179.68320 * 13 12 11 15 15 C 1.34830 * 117.00415 * 174.48536 * 14 13 12 16 16 H 1.07997 * 119.99905 * 5.05631 * 15 14 13 17 17 C 1.38653 * 120.00153 * 185.06053 * 15 14 13 18 18 N 1.31563 * 120.00075 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99993 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47392 * 89.99761 * 19 17 15 21 21 H 1.48509 * 109.47187 * 209.99588 * 19 17 15 22 22 H 1.48501 * 109.47192 * 329.99203 * 19 17 15 23 23 C 1.38881 * 119.86533 * 359.70385 * 13 12 11 24 24 C 1.38101 * 119.92972 * 359.97438 * 23 13 12 25 25 H 1.08997 * 109.47263 * 299.99608 * 1 2 3 26 26 H 1.09001 * 109.47345 * 59.99941 * 1 2 3 27 27 H 1.08999 * 109.47087 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.47153 * 180.02562 * 5 3 2 29 29 H 1.09004 * 109.47326 * 299.99381 * 5 3 2 30 30 H 1.09000 * 109.47664 * 59.99822 * 5 3 2 31 31 H 0.96997 * 119.99843 * 359.97438 * 8 6 3 32 32 H 1.08999 * 109.47009 * 299.99198 * 9 8 6 33 33 H 1.08997 * 109.47044 * 60.00008 * 9 8 6 34 34 H 1.07995 * 119.96390 * 359.97438 * 11 10 9 35 35 H 1.08000 * 120.03155 * 180.27156 * 12 11 10 36 36 H 0.96995 * 119.99942 * 180.02562 * 18 17 15 37 37 H 1.07999 * 120.03236 * 179.97438 * 23 13 12 38 38 H 1.07993 * 119.96217 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7294 2.2541 -0.8418 5 6 1.7427 2.4015 1.3073 6 6 3.7141 1.9386 -0.1239 7 8 4.4551 1.0201 0.1555 8 7 4.2252 3.1125 -0.5450 9 6 5.6758 3.2790 -0.6649 10 6 5.9829 4.6716 -1.1521 11 6 6.0798 4.9224 -2.5087 12 6 6.3556 6.1987 -2.9585 13 6 6.5475 7.2283 -2.0465 14 8 6.8251 8.4826 -2.4852 15 6 6.8867 9.4568 -1.5552 16 1 6.7998 9.2095 -0.5075 17 6 7.0616 10.7762 -1.9439 18 7 7.1679 11.0775 -3.2201 19 14 7.1477 12.1259 -0.6553 20 1 8.5591 12.3220 -0.2374 21 1 6.6205 13.3909 -1.2274 22 1 6.3317 11.7379 0.5232 23 6 6.4552 6.9721 -0.6846 24 6 6.1725 5.6950 -0.2414 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9875 3.4638 1.3072 29 1 0.6635 2.2779 1.3969 30 1 2.2353 1.9149 2.1492 31 1 3.6325 3.8471 -0.7687 32 1 6.1410 3.1234 0.3084 33 1 6.0675 2.5512 -1.3755 34 1 5.9356 4.1202 -3.2172 35 1 6.4267 6.3948 -4.0181 36 1 7.2905 12.0005 -3.4920 37 1 6.6043 7.7706 0.0270 38 1 6.1011 5.4951 0.8174 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067927781.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:45 Heat of formation + Delta-G solvation = -65.148739 kcal Electronic energy + Delta-G solvation = -20289.179030 eV Core-core repulsion = 17029.661733 eV Total energy + Delta-G solvation = -3259.517297 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.08137 -40.56463 -38.51533 -35.72780 -34.44589 -34.14142 -31.84776 -31.26398 -29.61574 -27.74644 -26.64424 -25.06958 -23.65425 -22.19329 -21.58842 -19.88426 -18.98464 -18.44857 -17.79860 -16.70403 -16.58507 -16.32904 -16.10866 -15.80872 -15.54591 -15.20091 -15.13768 -14.94213 -14.41599 -14.39895 -14.23527 -13.90185 -13.67162 -13.44512 -13.14583 -13.04742 -12.90842 -12.71592 -12.52741 -12.37465 -12.24005 -12.11800 -11.20697 -11.05248 -10.79974 -10.79000 -10.14155 -9.81888 -9.02295 -8.70959 -8.48645 -6.16926 0.41511 0.56976 0.61070 1.36160 1.44285 1.51521 1.53133 1.66123 2.16788 2.23307 2.83934 3.16093 3.47748 3.65339 3.83179 3.87225 4.01449 4.02208 4.16794 4.36576 4.39231 4.43772 4.55989 4.61524 4.68734 4.74805 4.79684 4.93614 5.03199 5.13192 5.13831 5.25807 5.35265 5.51690 5.68540 5.73813 6.01063 6.14894 6.47320 6.96223 7.13940 7.75342 8.74133 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.029244 B = 0.002580 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.226917 B =10849.151370 C =11192.717416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.266 6.266 3 C -0.080 4.080 4 H 0.131 0.869 5 C -0.139 4.139 6 C 0.529 3.471 7 O -0.567 6.567 8 N -0.707 5.707 9 C 0.185 3.815 10 C -0.182 4.182 11 C -0.043 4.043 12 C -0.205 4.205 13 C 0.123 3.877 14 O -0.229 6.229 15 C -0.413 4.413 16 H 0.104 0.896 17 C -0.022 4.022 18 N -0.919 5.919 19 Si 1.018 2.982 20 H -0.265 1.265 21 H -0.272 1.272 22 H -0.251 1.251 23 C -0.243 4.243 24 C -0.044 4.044 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.112 0.888 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.060 0.940 31 H 0.413 0.587 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.147 0.853 35 H 0.115 0.885 36 H 0.273 0.727 37 H 0.121 0.879 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.749 -15.786 8.253 22.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.041 6.041 3 C -0.211 4.211 4 H 0.149 0.851 5 C -0.198 4.198 6 C 0.314 3.686 7 O -0.446 6.446 8 N -0.359 5.359 9 C 0.062 3.938 10 C -0.184 4.184 11 C -0.062 4.062 12 C -0.224 4.224 13 C 0.072 3.928 14 O -0.135 6.135 15 C -0.489 4.489 16 H 0.122 0.878 17 C -0.220 4.220 18 N -0.557 5.557 19 Si 0.837 3.163 20 H -0.190 1.190 21 H -0.197 1.197 22 H -0.175 1.175 23 C -0.262 4.262 24 C -0.063 4.063 25 H 0.111 0.889 26 H 0.108 0.892 27 H 0.130 0.870 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.079 0.921 31 H 0.250 0.750 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.164 0.836 35 H 0.133 0.867 36 H 0.082 0.918 37 H 0.139 0.861 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.465 -17.049 8.085 22.614 hybrid contribution -0.630 2.268 -0.042 2.354 sum -13.095 -14.782 8.043 21.323 Atomic orbital electron populations 1.23579 0.91376 1.07675 1.06283 1.87705 1.09686 1.08609 1.98092 1.23307 0.95262 0.97148 1.05397 0.85075 1.22003 1.03034 1.01487 0.93249 1.20147 0.89853 0.82283 0.76320 1.90724 1.61737 1.41483 1.50698 1.46066 1.08328 1.14520 1.66997 1.19908 0.80264 0.92383 1.01217 1.19457 1.10826 0.94926 0.93159 1.20877 0.95182 0.94627 0.95500 1.20447 1.10804 0.92527 0.98604 1.20002 0.92787 0.86107 0.93932 1.83950 1.78347 1.13864 1.37322 1.21834 1.52264 0.85694 0.89130 0.87839 1.26585 0.95843 0.99822 0.99724 1.70180 1.47831 1.20420 1.17249 0.84594 0.79365 0.75693 0.76638 1.18976 1.19707 1.17460 1.21247 1.11421 0.99000 0.94571 1.20938 0.94719 0.90663 0.99933 0.88910 0.89196 0.86966 0.89800 0.89166 0.92076 0.75017 0.91004 0.90967 0.83574 0.86709 0.91799 0.86126 0.84211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 10.45 113.37 1.18 0.00 16 2 S -0.27 -5.28 21.04 -56.49 -1.19 -6.47 16 3 C -0.08 -1.31 3.18 29.85 0.09 -1.22 16 4 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 5 C -0.14 -1.72 9.08 71.98 0.65 -1.06 16 6 C 0.53 12.27 7.00 87.66 0.61 12.89 16 7 O -0.57 -18.23 16.04 -3.02 -0.05 -18.28 16 8 N -0.71 -14.36 5.55 -466.78 -2.59 -16.95 16 9 C 0.19 4.34 5.80 85.63 0.50 4.84 16 10 C -0.18 -5.04 5.25 -19.83 -0.10 -5.14 16 11 C -0.04 -1.31 9.69 22.25 0.22 -1.09 16 12 C -0.20 -8.04 9.99 22.39 0.22 -7.82 16 13 C 0.12 5.73 6.65 22.58 0.15 5.88 16 14 O -0.23 -13.21 9.76 -22.73 -0.22 -13.43 16 15 C -0.41 -23.12 9.49 67.92 0.64 -22.48 16 16 H 0.10 5.26 5.20 -2.91 -0.02 5.25 16 17 C -0.02 -1.21 5.49 84.83 0.47 -0.74 16 18 N -0.92 -55.01 13.67 21.61 0.30 -54.72 16 19 Si 1.02 41.35 29.55 68.60 2.03 43.38 16 20 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 21 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 22 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 23 C -0.24 -9.73 9.17 22.39 0.21 -9.52 16 24 C -0.04 -1.35 9.69 22.25 0.22 -1.14 16 25 H 0.09 0.65 7.14 -2.39 -0.02 0.63 16 26 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.09 0.73 6.92 -2.38 -0.02 0.72 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.41 6.80 8.46 -92.71 -0.78 6.01 16 32 H 0.07 1.72 8.08 -2.39 -0.02 1.70 16 33 H 0.07 1.73 8.08 -2.39 -0.02 1.71 16 34 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 35 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 36 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 37 H 0.12 4.95 5.64 -2.91 -0.02 4.93 16 38 H 0.14 3.46 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -73.57 340.59 3.63 -69.94 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.29 Total: 23.11 kcal Atomic # 6 Polarization: -31.65 SS G_CDS: 5.06 Total: -26.59 kcal Atomic # 7 Polarization: -69.37 SS G_CDS: -2.29 Total: -71.66 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -0.27 Total: -31.71 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Atomic # 16 Polarization: -5.28 SS G_CDS: -1.19 Total: -6.47 kcal Total: -73.57 3.63 -69.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067927781.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.790 kcal (2) G-P(sol) polarization free energy of solvation -73.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds