Wall clock time and date at job start Tue Mar 31 2020 07:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81395 * 103.00411 * 2 1 4 4 H 1.09006 * 109.46709 * 54.99779 * 3 2 1 5 5 C 1.52994 * 109.47104 * 295.00328 * 3 2 1 6 6 C 1.50701 * 109.47234 * 174.99753 * 3 2 1 7 7 O 1.21280 * 119.99638 * 25.00422 * 6 3 2 8 8 N 1.34773 * 119.99834 * 204.99693 * 6 3 2 9 9 C 1.46502 * 119.99941 * 179.97438 * 8 6 3 10 10 C 1.50703 * 109.47230 * 180.02562 * 9 8 6 11 11 C 1.38302 * 119.93139 * 269.73149 * 10 9 8 12 12 C 1.38098 * 120.06823 * 179.72556 * 11 10 9 13 13 C 1.38880 * 119.92733 * 0.57280 * 12 11 10 14 14 O 1.35753 * 120.06862 * 179.68521 * 13 12 11 15 15 C 1.34822 * 117.00444 * 174.48381 * 14 13 12 16 16 H 1.08001 * 119.99931 * 5.05024 * 15 14 13 17 17 C 1.38656 * 120.00336 * 185.05391 * 15 14 13 18 18 N 1.31554 * 119.99797 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99785 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47120 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46712 * 120.00228 * 19 17 15 22 22 H 1.48495 * 109.47062 * 240.00081 * 19 17 15 23 23 C 1.38880 * 119.86397 * 359.69753 * 13 12 11 24 24 C 1.38098 * 119.93015 * 0.02562 * 23 13 12 25 25 H 1.09000 * 109.46846 * 59.99902 * 1 2 3 26 26 H 1.09000 * 109.47741 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47220 * 300.00296 * 1 2 3 28 28 H 1.08999 * 109.47193 * 179.97438 * 5 3 2 29 29 H 1.09006 * 109.46890 * 299.99341 * 5 3 2 30 30 H 1.08993 * 109.47599 * 59.99563 * 5 3 2 31 31 H 0.97006 * 120.00632 * 0.02562 * 8 6 3 32 32 H 1.08996 * 109.47793 * 300.00854 * 9 8 6 33 33 H 1.09005 * 109.46698 * 60.00779 * 9 8 6 34 34 H 1.08001 * 119.96671 * 359.97438 * 11 10 9 35 35 H 1.07997 * 120.03491 * 180.26825 * 12 11 10 36 36 H 0.97004 * 119.99895 * 180.02562 * 18 17 15 37 37 H 1.08000 * 120.03143 * 179.97438 * 23 13 12 38 38 H 1.07996 * 119.96631 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.7295 2.2540 0.8419 5 6 1.7428 2.4015 -1.3073 6 6 3.7143 1.9384 0.1239 7 8 4.4584 1.0529 -0.2409 8 7 4.2217 3.0754 0.6399 9 6 5.6722 3.2414 0.7608 10 6 5.9751 4.5891 1.3633 11 6 6.1556 5.6873 0.5421 12 6 6.4276 6.9247 1.0915 13 6 6.5317 7.0634 2.4694 14 8 6.8054 8.2773 3.0121 15 6 6.7797 8.3663 4.3571 16 1 6.6296 7.4791 4.9543 17 6 6.9460 9.5970 4.9738 18 7 7.1283 10.6779 4.2464 19 14 6.9097 9.7204 6.8374 20 1 6.6912 8.3715 7.4186 21 1 8.2036 10.2643 7.3227 22 1 5.8063 10.6234 7.2523 23 6 6.3555 5.9577 3.2910 24 6 6.0780 4.7240 2.7358 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.9877 3.4636 -1.3071 29 1 2.2355 1.9149 -2.1491 30 1 0.6636 2.2778 -1.3969 31 1 3.6265 3.7835 0.9319 32 1 6.0754 2.4580 1.4026 33 1 6.1292 3.1734 -0.2264 34 1 6.0797 5.5777 -0.5296 35 1 6.5642 7.7827 0.4499 36 1 7.2450 11.5389 4.6778 37 1 6.4362 6.0623 4.3629 38 1 5.9412 3.8637 3.3742 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067927783.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:48 Heat of formation + Delta-G solvation = -44.856438 kcal Electronic energy + Delta-G solvation = -20279.811019 eV Core-core repulsion = 17021.173663 eV Total energy + Delta-G solvation = -3258.637357 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.87349 -39.07013 -36.92232 -34.50818 -33.51794 -32.38439 -30.33201 -29.90746 -29.08532 -26.18605 -25.25548 -24.03873 -22.09968 -20.70049 -20.59570 -18.12412 -17.70686 -17.03271 -16.85284 -15.57996 -15.44306 -14.85093 -14.65941 -14.53828 -14.39332 -14.01838 -13.85732 -13.75113 -13.44181 -13.28333 -12.99455 -12.83074 -12.54046 -12.29256 -12.05494 -12.03874 -11.70747 -11.43793 -11.02136 -10.83382 -10.72745 -10.50647 -10.13210 -9.96232 -9.46448 -9.06087 -8.95090 -8.33185 -7.92219 -7.37328 -6.56693 -4.15527 1.18805 2.02678 2.08683 2.22454 2.57027 3.04465 3.07198 3.12848 3.27411 3.87293 4.38586 4.51509 4.53948 4.72399 4.79819 4.83681 4.98131 5.10625 5.15110 5.21003 5.28254 5.37470 5.41330 5.61729 5.70597 5.75850 5.86661 6.08084 6.30428 6.40176 6.55507 6.75911 6.91424 7.09668 7.22743 7.31178 7.46043 7.67201 7.88085 8.11747 8.88774 9.56567 10.60818 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.027155 B = 0.002600 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.888297 B =10764.848600 C =11126.492093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.192 6.192 3 C -0.094 4.094 4 H 0.106 0.894 5 C -0.142 4.142 6 C 0.530 3.470 7 O -0.526 6.526 8 N -0.715 5.715 9 C 0.180 3.820 10 C -0.216 4.216 11 C -0.054 4.054 12 C -0.195 4.195 13 C 0.161 3.839 14 O -0.173 6.173 15 C -0.393 4.393 16 H 0.094 0.906 17 C 0.040 3.960 18 N -0.859 5.859 19 Si 0.942 3.058 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.275 1.275 23 C -0.237 4.237 24 C -0.050 4.050 25 H 0.077 0.923 26 H 0.103 0.897 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.402 0.598 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.271 0.729 37 H 0.129 0.871 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.834 -14.223 -6.638 19.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.034 5.966 3 C -0.226 4.226 4 H 0.124 0.876 5 C -0.201 4.201 6 C 0.313 3.687 7 O -0.402 6.402 8 N -0.367 5.367 9 C 0.058 3.942 10 C -0.218 4.218 11 C -0.073 4.073 12 C -0.215 4.215 13 C 0.106 3.894 14 O -0.075 6.075 15 C -0.469 4.469 16 H 0.112 0.888 17 C -0.165 4.165 18 N -0.493 5.493 19 Si 0.767 3.233 20 H -0.190 1.190 21 H -0.200 1.200 22 H -0.200 1.200 23 C -0.256 4.256 24 C -0.069 4.069 25 H 0.096 0.904 26 H 0.121 0.879 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.237 0.763 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.131 0.869 35 H 0.136 0.864 36 H 0.081 0.919 37 H 0.146 0.854 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.497 -15.255 -6.944 19.776 hybrid contribution -1.191 1.570 1.220 2.317 sum -11.688 -13.685 -5.724 18.885 Atomic orbital electron populations 1.23545 0.95710 1.06613 1.04946 1.87418 1.04851 1.06495 1.97861 1.23354 0.97688 0.98062 1.03450 0.87554 1.21984 1.01773 1.01339 0.94988 1.19634 0.88558 0.82598 0.77884 1.90735 1.60209 1.40933 1.48355 1.46284 1.08953 1.18117 1.63377 1.20019 0.79070 0.94694 1.00422 1.19188 1.14654 0.94230 0.93705 1.20530 0.97016 0.91485 0.98235 1.20217 1.10873 0.97852 0.92528 1.19447 0.91218 0.86316 0.92438 1.83977 1.74644 1.25214 1.23687 1.21410 1.51734 0.95477 0.78323 0.88843 1.25329 0.96324 0.94107 1.00720 1.70044 1.44316 0.98926 1.35995 0.85624 0.78384 0.78955 0.80352 1.19016 1.20034 1.20048 1.21163 1.11111 0.92696 1.00642 1.20648 0.96180 0.96337 0.93714 0.90375 0.87851 0.90510 0.90921 0.90568 0.91383 0.76310 0.91391 0.91379 0.86948 0.86352 0.91891 0.85383 0.87359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 10.45 101.05 1.06 0.16 16 2 S -0.19 -2.07 21.10 -107.50 -2.27 -4.34 16 3 C -0.09 -0.91 3.17 -27.89 -0.09 -1.00 16 4 H 0.11 0.83 8.14 -51.92 -0.42 0.41 16 5 C -0.14 -1.11 9.08 37.15 0.34 -0.77 16 6 C 0.53 6.85 6.95 -10.99 -0.08 6.78 16 7 O -0.53 -8.86 16.14 5.56 0.09 -8.77 16 8 N -0.72 -8.57 5.55 -61.47 -0.34 -8.91 16 9 C 0.18 2.45 5.80 -5.19 -0.03 2.42 16 10 C -0.22 -3.36 5.25 -104.57 -0.55 -3.91 16 11 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 12 C -0.20 -3.84 9.99 -39.40 -0.39 -4.23 16 13 C 0.16 3.66 6.65 -39.11 -0.26 3.40 16 14 O -0.17 -4.72 9.76 0.06 0.00 -4.72 16 15 C -0.39 -10.56 9.49 30.89 0.29 -10.27 16 16 H 0.09 2.32 5.20 -52.49 -0.27 2.04 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -24.40 13.67 55.48 0.76 -23.64 16 19 Si 0.94 19.80 29.55 -169.99 -5.02 14.78 16 20 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 C -0.24 -4.81 9.17 -39.40 -0.36 -5.17 16 24 C -0.05 -0.84 9.69 -39.61 -0.38 -1.23 16 25 H 0.08 0.42 7.14 -51.92 -0.37 0.05 16 26 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 27 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.41 6.92 -51.93 -0.36 0.05 16 31 H 0.40 4.15 8.46 -40.82 -0.35 3.81 16 32 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 33 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 34 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 36 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.13 2.63 5.64 -52.49 -0.30 2.33 16 38 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 340.70 15.07 5.13 5.13 Total: -1.00 -31.43 340.70 -7.59 -39.02 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -5.00 Total: 5.58 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -0.94 Total: -14.11 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: 0.42 Total: -32.56 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.09 Total: -13.49 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Atomic # 16 Polarization: -2.07 SS G_CDS: -2.27 Total: -4.34 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.43 -7.59 -39.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067927783.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.841 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds