Wall clock time and date at job start Tue Mar 31 2020 07:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81395 * 103.00411 * 2 1 4 4 H 1.09006 * 109.46709 * 54.99779 * 3 2 1 5 5 C 1.52994 * 109.47104 * 295.00328 * 3 2 1 6 6 C 1.50701 * 109.47234 * 174.99753 * 3 2 1 7 7 O 1.21280 * 119.99638 * 25.00422 * 6 3 2 8 8 N 1.34773 * 119.99834 * 204.99693 * 6 3 2 9 9 C 1.46502 * 119.99941 * 179.97438 * 8 6 3 10 10 C 1.50703 * 109.47230 * 180.02562 * 9 8 6 11 11 C 1.38302 * 119.93139 * 269.73149 * 10 9 8 12 12 C 1.38098 * 120.06823 * 179.72556 * 11 10 9 13 13 C 1.38880 * 119.92733 * 0.57280 * 12 11 10 14 14 O 1.35753 * 120.06862 * 179.68521 * 13 12 11 15 15 C 1.34822 * 117.00444 * 174.48381 * 14 13 12 16 16 H 1.08001 * 119.99931 * 5.05024 * 15 14 13 17 17 C 1.38656 * 120.00336 * 185.05391 * 15 14 13 18 18 N 1.31554 * 119.99797 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99785 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47120 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46712 * 120.00228 * 19 17 15 22 22 H 1.48495 * 109.47062 * 240.00081 * 19 17 15 23 23 C 1.38880 * 119.86397 * 359.69753 * 13 12 11 24 24 C 1.38098 * 119.93015 * 0.02562 * 23 13 12 25 25 H 1.09000 * 109.46846 * 59.99902 * 1 2 3 26 26 H 1.09000 * 109.47741 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47220 * 300.00296 * 1 2 3 28 28 H 1.08999 * 109.47193 * 179.97438 * 5 3 2 29 29 H 1.09006 * 109.46890 * 299.99341 * 5 3 2 30 30 H 1.08993 * 109.47599 * 59.99563 * 5 3 2 31 31 H 0.97006 * 120.00632 * 0.02562 * 8 6 3 32 32 H 1.08996 * 109.47793 * 300.00854 * 9 8 6 33 33 H 1.09005 * 109.46698 * 60.00779 * 9 8 6 34 34 H 1.08001 * 119.96671 * 359.97438 * 11 10 9 35 35 H 1.07997 * 120.03491 * 180.26825 * 12 11 10 36 36 H 0.97004 * 119.99895 * 180.02562 * 18 17 15 37 37 H 1.08000 * 120.03143 * 179.97438 * 23 13 12 38 38 H 1.07996 * 119.96631 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.7295 2.2540 0.8419 5 6 1.7428 2.4015 -1.3073 6 6 3.7143 1.9384 0.1239 7 8 4.4584 1.0529 -0.2409 8 7 4.2217 3.0754 0.6399 9 6 5.6722 3.2414 0.7608 10 6 5.9751 4.5891 1.3633 11 6 6.1556 5.6873 0.5421 12 6 6.4276 6.9247 1.0915 13 6 6.5317 7.0634 2.4694 14 8 6.8054 8.2773 3.0121 15 6 6.7797 8.3663 4.3571 16 1 6.6296 7.4791 4.9543 17 6 6.9460 9.5970 4.9738 18 7 7.1283 10.6779 4.2464 19 14 6.9097 9.7204 6.8374 20 1 6.6912 8.3715 7.4186 21 1 8.2036 10.2643 7.3227 22 1 5.8063 10.6234 7.2523 23 6 6.3555 5.9577 3.2910 24 6 6.0780 4.7240 2.7358 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.9877 3.4636 -1.3071 29 1 2.2355 1.9149 -2.1491 30 1 0.6636 2.2778 -1.3969 31 1 3.6265 3.7835 0.9319 32 1 6.0754 2.4580 1.4026 33 1 6.1292 3.1734 -0.2264 34 1 6.0797 5.5777 -0.5296 35 1 6.5642 7.7827 0.4499 36 1 7.2450 11.5389 4.6778 37 1 6.4362 6.0623 4.3629 38 1 5.9412 3.8637 3.3742 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067927783.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:48 Heat of formation + Delta-G solvation = -65.321838 kcal Electronic energy + Delta-G solvation = -20280.698466 eV Core-core repulsion = 17021.173663 eV Total energy + Delta-G solvation = -3259.524803 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.08183 -40.56565 -38.51766 -35.72441 -34.43695 -34.14521 -31.84869 -31.27807 -29.62033 -27.75281 -26.66241 -25.04528 -23.65574 -22.19301 -21.59850 -19.88314 -18.97829 -18.47710 -17.80150 -16.68196 -16.58800 -16.27518 -16.17385 -15.79142 -15.54236 -15.28594 -15.15707 -14.78641 -14.52626 -14.38070 -14.24876 -13.89725 -13.66666 -13.44451 -13.13914 -13.05810 -12.91509 -12.72618 -12.54234 -12.35956 -12.24504 -12.09717 -11.20762 -11.06095 -10.81212 -10.79550 -10.14217 -9.82008 -9.02426 -8.71500 -8.49105 -6.17184 0.40523 0.56939 0.60015 1.36028 1.43003 1.51469 1.53731 1.67262 2.16354 2.23012 2.83666 3.15841 3.47623 3.64915 3.82610 3.87451 4.01585 4.01997 4.16598 4.36322 4.38944 4.43597 4.55838 4.61829 4.68711 4.74777 4.79760 4.93475 5.03134 5.13290 5.13879 5.25568 5.35060 5.51611 5.68489 5.73733 6.00982 6.14770 6.47252 6.96001 7.13745 7.75067 8.73882 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.027155 B = 0.002600 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.888297 B =10764.848600 C =11126.492093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.268 6.268 3 C -0.079 4.079 4 H 0.130 0.870 5 C -0.138 4.138 6 C 0.529 3.471 7 O -0.568 6.568 8 N -0.707 5.707 9 C 0.185 3.815 10 C -0.182 4.182 11 C -0.042 4.042 12 C -0.204 4.204 13 C 0.123 3.877 14 O -0.229 6.229 15 C -0.413 4.413 16 H 0.104 0.896 17 C -0.022 4.022 18 N -0.919 5.919 19 Si 1.018 2.982 20 H -0.251 1.251 21 H -0.270 1.270 22 H -0.268 1.268 23 C -0.243 4.243 24 C -0.046 4.046 25 H 0.092 0.908 26 H 0.112 0.888 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.413 0.587 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.149 0.851 35 H 0.116 0.884 36 H 0.273 0.727 37 H 0.120 0.880 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.813 -16.357 -6.803 22.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.043 6.043 3 C -0.211 4.211 4 H 0.148 0.852 5 C -0.197 4.197 6 C 0.314 3.686 7 O -0.447 6.447 8 N -0.359 5.359 9 C 0.062 3.938 10 C -0.184 4.184 11 C -0.060 4.060 12 C -0.223 4.223 13 C 0.072 3.928 14 O -0.135 6.135 15 C -0.489 4.489 16 H 0.121 0.879 17 C -0.219 4.219 18 N -0.556 5.556 19 Si 0.837 3.163 20 H -0.174 1.174 21 H -0.195 1.195 22 H -0.193 1.193 23 C -0.263 4.263 24 C -0.064 4.064 25 H 0.111 0.889 26 H 0.131 0.869 27 H 0.108 0.892 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.250 0.750 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.166 0.834 35 H 0.134 0.866 36 H 0.082 0.918 37 H 0.138 0.862 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.506 -17.431 -7.131 22.608 hybrid contribution -0.674 1.891 1.012 2.248 sum -13.180 -15.540 -6.119 21.276 Atomic orbital electron populations 1.23576 0.91233 1.07694 1.06309 1.87686 1.09874 1.08625 1.98089 1.23299 0.95248 0.97106 1.05422 0.85187 1.21992 1.03004 1.01492 0.93219 1.20143 0.89864 0.81819 0.76753 1.90724 1.61549 1.42308 1.50086 1.46080 1.08309 1.18419 1.63105 1.19908 0.80289 0.92957 1.00633 1.19456 1.10839 0.94937 0.93126 1.20880 0.95001 0.90004 1.00160 1.20455 1.10977 0.99423 0.91462 1.20007 0.92817 0.86020 0.93982 1.83947 1.77988 1.27605 1.23924 1.21865 1.51921 0.96212 0.78863 0.87904 1.26574 0.95814 0.93456 1.06096 1.70182 1.47492 0.99655 1.38320 0.84537 0.78544 0.79571 0.73636 1.17399 1.19522 1.19338 1.21237 1.11399 0.93402 1.00225 1.20935 0.94901 0.95798 0.94767 0.88867 0.86948 0.89189 0.89788 0.92074 0.89154 0.75013 0.91244 0.90721 0.83370 0.86608 0.91789 0.86237 0.84420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 10.45 113.37 1.18 0.02 16 2 S -0.27 -5.32 21.10 -56.49 -1.19 -6.51 16 3 C -0.08 -1.31 3.17 29.85 0.09 -1.21 16 4 H 0.13 1.51 8.14 -2.39 -0.02 1.50 16 5 C -0.14 -1.71 9.08 71.98 0.65 -1.05 16 6 C 0.53 12.30 6.95 87.66 0.61 12.91 16 7 O -0.57 -18.24 16.14 -3.03 -0.05 -18.29 16 8 N -0.71 -14.41 5.55 -466.78 -2.59 -17.00 16 9 C 0.18 4.35 5.80 85.63 0.50 4.84 16 10 C -0.18 -5.04 5.25 -19.83 -0.10 -5.15 16 11 C -0.04 -1.25 9.69 22.25 0.22 -1.03 16 12 C -0.20 -7.96 9.99 22.39 0.22 -7.73 16 13 C 0.12 5.73 6.65 22.58 0.15 5.88 16 14 O -0.23 -13.20 9.76 -22.69 -0.22 -13.42 16 15 C -0.41 -23.15 9.49 67.92 0.64 -22.50 16 16 H 0.10 5.28 5.20 -2.91 -0.02 5.26 16 17 C -0.02 -1.19 5.49 84.83 0.47 -0.72 16 18 N -0.92 -54.98 13.67 21.61 0.30 -54.68 16 19 Si 1.02 41.53 29.55 68.60 2.03 43.56 16 20 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 21 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 22 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 23 C -0.24 -9.82 9.17 22.39 0.21 -9.61 16 24 C -0.05 -1.42 9.69 22.25 0.22 -1.20 16 25 H 0.09 0.65 7.14 -2.39 -0.02 0.63 16 26 H 0.11 0.91 8.14 -2.39 -0.02 0.90 16 27 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.09 0.73 6.92 -2.39 -0.02 0.71 16 31 H 0.41 6.83 8.46 -92.70 -0.78 6.04 16 32 H 0.07 1.70 8.08 -2.39 -0.02 1.68 16 33 H 0.07 1.75 8.08 -2.38 -0.02 1.73 16 34 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 35 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 36 H 0.27 14.93 8.31 -92.70 -0.77 14.16 16 37 H 0.12 4.97 5.64 -2.91 -0.02 4.95 16 38 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -73.62 340.70 3.62 -70.00 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.29 Total: 22.91 kcal Atomic # 6 Polarization: -31.62 SS G_CDS: 5.06 Total: -26.57 kcal Atomic # 7 Polarization: -69.39 SS G_CDS: -2.29 Total: -71.68 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -0.27 Total: -31.71 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 16 Polarization: -5.32 SS G_CDS: -1.19 Total: -6.51 kcal Total: -73.62 3.62 -70.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067927783.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.676 kcal (2) G-P(sol) polarization free energy of solvation -73.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds