Wall clock time and date at job start Tue Mar 31 2020 07:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42902 * 114.00018 * 2 1 4 4 C 1.52999 * 109.47142 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47432 * 175.00130 * 4 3 2 6 6 C 1.53004 * 109.47150 * 55.00086 * 4 3 2 7 7 N 1.46505 * 109.47515 * 295.00115 * 4 3 2 8 8 C 1.34774 * 120.00150 * 204.99931 * 7 4 3 9 9 O 1.21611 * 119.99964 * 359.97438 * 8 7 4 10 10 C 1.47433 * 119.99869 * 179.97438 * 8 7 4 11 11 C 1.39681 * 120.21363 * 0.02930 * 10 8 7 12 12 C 1.37805 * 119.93452 * 179.97438 * 11 10 8 13 13 C 1.38654 * 120.38625 * 0.02562 * 12 11 10 14 14 C 1.37919 * 120.43362 * 0.02562 * 13 12 11 15 15 C 1.39103 * 120.05168 * 359.97438 * 14 13 12 16 16 S 1.76206 * 120.18762 * 180.02562 * 15 14 13 17 17 C 1.76190 * 99.99940 * 6.84043 * 16 15 14 18 18 H 1.07998 * 120.00270 * 5.65109 * 17 16 15 19 19 C 1.38809 * 120.00047 * 185.65490 * 17 16 15 20 20 N 1.31555 * 120.00018 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00216 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47140 * 59.99767 * 21 19 17 23 23 H 1.48498 * 109.46834 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46736 * 300.00003 * 21 19 17 25 25 H 1.09001 * 109.47152 * 60.00336 * 1 2 3 26 26 H 1.09006 * 109.47417 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47764 * 299.99994 * 1 2 3 28 28 H 1.09003 * 109.46993 * 60.00035 * 3 2 1 29 29 H 1.08992 * 109.47380 * 299.99833 * 3 2 1 30 30 H 1.08998 * 109.46958 * 59.99699 * 6 4 3 31 31 H 1.09000 * 109.47398 * 179.97438 * 6 4 3 32 32 H 1.08998 * 109.46957 * 299.99759 * 6 4 3 33 33 H 0.97000 * 119.99614 * 25.00145 * 7 4 3 34 34 H 1.07997 * 120.03131 * 359.97438 * 11 10 8 35 35 H 1.08008 * 119.80557 * 180.02562 * 12 11 10 36 36 H 1.08001 * 119.78248 * 180.28485 * 13 12 11 37 37 H 1.07998 * 119.97190 * 179.97438 * 14 13 12 38 38 H 0.96996 * 120.00225 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9785 2.1765 -0.0889 6 6 3.9790 0.3194 -1.1807 7 7 3.9757 0.5644 1.2527 8 6 5.2195 0.7945 1.7179 9 8 5.9765 1.5167 1.0980 10 6 5.6624 0.1707 2.9782 11 6 4.7967 -0.6600 3.6935 12 6 5.2168 -1.2405 4.8706 13 6 6.4957 -1.0048 5.3515 14 6 7.3629 -0.1864 4.6584 15 6 6.9577 0.4089 3.4682 16 16 8.0629 1.4546 2.5794 17 6 9.5337 1.2146 3.5194 18 1 9.5519 0.4871 4.3174 19 6 10.6691 1.9605 3.2343 20 7 10.6471 2.8464 2.2620 21 14 12.2283 1.7065 4.2313 22 1 12.6800 0.2987 4.0936 23 1 13.2892 2.6175 3.7315 24 1 11.9551 2.0011 5.6609 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.6885 1.8464 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.6514 0.7809 -2.1122 31 1 5.0656 0.2337 -1.1805 32 1 3.5359 -0.6725 -1.0911 33 1 3.3720 -0.0120 1.7470 34 1 3.7992 -0.8471 3.3244 35 1 4.5459 -1.8828 5.4218 36 1 6.8164 -1.4684 6.2727 37 1 8.3573 -0.0076 5.0400 38 1 11.4404 3.3679 2.0630 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072967394.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:28 Heat of formation + Delta-G solvation = -56.936596 kcal Electronic energy + Delta-G solvation = -21069.392200 eV Core-core repulsion = 17810.231008 eV Total energy + Delta-G solvation = -3259.161192 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.65104 -38.26750 -37.32423 -34.88374 -32.72736 -31.61143 -30.23605 -29.65782 -27.47187 -25.83025 -25.79644 -23.50591 -21.96483 -21.00488 -19.96723 -18.20650 -17.18503 -16.79985 -16.18600 -15.84300 -15.43841 -15.16716 -14.82754 -14.36143 -14.23348 -13.93083 -13.65785 -13.20005 -12.98782 -12.85267 -12.63515 -12.20609 -11.92225 -11.84170 -11.54918 -11.24747 -11.18865 -11.16354 -10.94014 -10.89674 -10.30476 -9.92918 -9.77759 -9.59589 -9.45365 -8.74215 -8.68407 -8.29349 -8.02686 -6.50156 -6.43429 -4.13743 1.57683 2.05887 3.12755 3.15670 3.19750 3.42832 3.47200 3.57624 3.66737 4.09177 4.53249 4.74164 4.96277 4.97613 5.07192 5.12948 5.16675 5.22261 5.36809 5.40589 5.42938 5.51794 5.63239 5.63934 5.84848 5.97738 6.14426 6.18611 6.42671 6.45194 6.63662 6.81831 6.88616 6.94755 7.07520 7.16936 7.47473 7.62719 8.00613 8.18474 8.85730 9.02578 10.59770 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.022143 B = 0.004100 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.216609 B = 6827.919547 C = 7930.379082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.053 3.947 4 C 0.149 3.851 5 H 0.100 0.900 6 C -0.159 4.159 7 N -0.730 5.730 8 C 0.553 3.447 9 O -0.511 6.511 10 C -0.177 4.177 11 C -0.060 4.060 12 C -0.187 4.187 13 C -0.077 4.077 14 C -0.154 4.154 15 C -0.057 4.057 16 S 0.184 5.816 17 C -0.597 4.597 18 H 0.090 0.910 19 C 0.084 3.916 20 N -0.859 5.859 21 Si 0.918 3.082 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.270 1.270 25 H 0.040 0.960 26 H 0.085 0.915 27 H 0.040 0.960 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.398 0.602 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.138 0.862 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.507 -5.159 -1.582 18.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C -0.024 4.024 4 C 0.044 3.956 5 H 0.118 0.882 6 C -0.218 4.218 7 N -0.385 5.385 8 C 0.342 3.658 9 O -0.389 6.389 10 C -0.192 4.192 11 C -0.080 4.080 12 C -0.212 4.212 13 C -0.099 4.099 14 C -0.179 4.179 15 C -0.177 4.177 16 S 0.449 5.551 17 C -0.743 4.743 18 H 0.108 0.892 19 C -0.127 4.127 20 N -0.491 5.491 21 Si 0.744 3.256 22 H -0.195 1.195 23 H -0.206 1.206 24 H -0.195 1.195 25 H 0.058 0.942 26 H 0.103 0.897 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.234 0.766 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.156 0.844 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.579 -3.692 -3.314 17.305 hybrid contribution 0.521 -1.052 2.050 2.362 sum -16.057 -4.744 -1.264 16.791 Atomic orbital electron populations 1.22734 0.81188 1.02711 0.99905 1.87905 1.19489 1.27710 1.95392 1.22904 0.93503 0.85045 1.00996 1.20915 0.90946 0.98688 0.85034 0.88205 1.22081 1.02447 1.00533 0.96697 1.45866 1.15313 1.52406 1.24924 1.18327 0.81265 0.81155 0.85058 1.90774 1.52108 1.37126 1.58845 1.19129 0.95413 1.06913 0.97744 1.20917 0.97393 0.95143 0.94582 1.20633 0.97023 1.05175 0.98355 1.21083 0.93713 0.96638 0.98491 1.21428 1.01122 0.99921 0.95440 1.23090 0.97226 0.99755 0.97581 1.84742 0.97934 1.43508 1.28949 1.24027 0.99596 1.26993 1.23701 0.89227 1.25090 0.99153 0.93533 0.94942 1.69966 1.30404 1.21308 1.27440 0.86211 0.80629 0.78691 0.80100 1.19487 1.20576 1.19507 0.94177 0.89672 0.94101 0.92580 0.91960 0.92339 0.91701 0.91808 0.76646 0.87109 0.87114 0.87055 0.84415 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.94 9.55 -35.23 -0.34 -4.28 16 3 C 0.05 0.52 5.68 37.16 0.21 0.73 16 4 C 0.15 1.94 2.98 -67.93 -0.20 1.74 16 5 H 0.10 1.43 7.58 -51.93 -0.39 1.03 16 6 C -0.16 -2.07 9.29 37.16 0.35 -1.72 16 7 N -0.73 -10.91 5.01 -54.87 -0.27 -11.19 16 8 C 0.55 10.88 7.71 -12.52 -0.10 10.78 16 9 O -0.51 -11.95 13.43 5.27 0.07 -11.88 16 10 C -0.18 -3.57 5.89 -104.75 -0.62 -4.19 16 11 C -0.06 -0.99 9.53 -39.20 -0.37 -1.36 16 12 C -0.19 -2.95 10.02 -39.59 -0.40 -3.35 16 13 C -0.08 -1.34 10.03 -39.54 -0.40 -1.74 16 14 C -0.15 -3.26 9.22 -39.38 -0.36 -3.63 16 15 C -0.06 -1.31 6.14 -38.40 -0.24 -1.55 16 16 S 0.18 4.99 18.56 -107.50 -2.00 2.99 16 17 C -0.60 -16.59 9.00 30.94 0.28 -16.32 16 18 H 0.09 2.36 4.98 -52.49 -0.26 2.10 16 19 C 0.08 2.31 5.49 -17.46 -0.10 2.22 16 20 N -0.86 -24.89 13.22 55.49 0.73 -24.16 16 21 Si 0.92 20.80 29.55 -169.99 -5.02 15.78 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.82 7.56 -51.93 -0.39 0.42 16 33 H 0.40 5.13 6.41 -40.82 -0.26 4.87 16 34 H 0.11 1.42 6.40 -52.49 -0.34 1.09 16 35 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 36 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.14 3.03 5.04 -52.49 -0.26 2.77 16 38 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 332.03 15.07 5.00 5.00 Total: -1.00 -32.07 332.03 -7.50 -39.57 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -4.85 Total: 5.20 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -0.83 Total: -17.04 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.46 Total: -35.34 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.27 Total: -16.16 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 4.99 SS G_CDS: -2.00 Total: 2.99 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.07 -7.50 -39.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072967394.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.368 kcal (2) G-P(sol) polarization free energy of solvation -32.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds