Wall clock time and date at job start Tue Mar 31 2020 07:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42902 * 114.00018 * 2 1 4 4 C 1.52999 * 109.47142 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47432 * 175.00130 * 4 3 2 6 6 C 1.53004 * 109.47150 * 55.00086 * 4 3 2 7 7 N 1.46505 * 109.47515 * 295.00115 * 4 3 2 8 8 C 1.34774 * 120.00150 * 204.99931 * 7 4 3 9 9 O 1.21611 * 119.99964 * 359.97438 * 8 7 4 10 10 C 1.47433 * 119.99869 * 179.97438 * 8 7 4 11 11 C 1.39681 * 120.21363 * 0.02930 * 10 8 7 12 12 C 1.37805 * 119.93452 * 179.97438 * 11 10 8 13 13 C 1.38654 * 120.38625 * 0.02562 * 12 11 10 14 14 C 1.37919 * 120.43362 * 0.02562 * 13 12 11 15 15 C 1.39103 * 120.05168 * 359.97438 * 14 13 12 16 16 S 1.76206 * 120.18762 * 180.02562 * 15 14 13 17 17 C 1.76190 * 99.99940 * 6.84043 * 16 15 14 18 18 H 1.07998 * 120.00270 * 5.65109 * 17 16 15 19 19 C 1.38809 * 120.00047 * 185.65490 * 17 16 15 20 20 N 1.31555 * 120.00018 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00216 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47140 * 59.99767 * 21 19 17 23 23 H 1.48498 * 109.46834 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46736 * 300.00003 * 21 19 17 25 25 H 1.09001 * 109.47152 * 60.00336 * 1 2 3 26 26 H 1.09006 * 109.47417 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47764 * 299.99994 * 1 2 3 28 28 H 1.09003 * 109.46993 * 60.00035 * 3 2 1 29 29 H 1.08992 * 109.47380 * 299.99833 * 3 2 1 30 30 H 1.08998 * 109.46958 * 59.99699 * 6 4 3 31 31 H 1.09000 * 109.47398 * 179.97438 * 6 4 3 32 32 H 1.08998 * 109.46957 * 299.99759 * 6 4 3 33 33 H 0.97000 * 119.99614 * 25.00145 * 7 4 3 34 34 H 1.07997 * 120.03131 * 359.97438 * 11 10 8 35 35 H 1.08008 * 119.80557 * 180.02562 * 12 11 10 36 36 H 1.08001 * 119.78248 * 180.28485 * 13 12 11 37 37 H 1.07998 * 119.97190 * 179.97438 * 14 13 12 38 38 H 0.96996 * 120.00225 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9785 2.1765 -0.0889 6 6 3.9790 0.3194 -1.1807 7 7 3.9757 0.5644 1.2527 8 6 5.2195 0.7945 1.7179 9 8 5.9765 1.5167 1.0980 10 6 5.6624 0.1707 2.9782 11 6 4.7967 -0.6600 3.6935 12 6 5.2168 -1.2405 4.8706 13 6 6.4957 -1.0048 5.3515 14 6 7.3629 -0.1864 4.6584 15 6 6.9577 0.4089 3.4682 16 16 8.0629 1.4546 2.5794 17 6 9.5337 1.2146 3.5194 18 1 9.5519 0.4871 4.3174 19 6 10.6691 1.9605 3.2343 20 7 10.6471 2.8464 2.2620 21 14 12.2283 1.7065 4.2313 22 1 12.6800 0.2987 4.0936 23 1 13.2892 2.6175 3.7315 24 1 11.9551 2.0011 5.6609 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.6885 1.8464 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.6514 0.7809 -2.1122 31 1 5.0656 0.2337 -1.1805 32 1 3.5359 -0.6725 -1.0911 33 1 3.3720 -0.0120 1.7470 34 1 3.7992 -0.8471 3.3244 35 1 4.5459 -1.8828 5.4218 36 1 6.8164 -1.4684 6.2727 37 1 8.3573 -0.0076 5.0400 38 1 11.4404 3.3679 2.0630 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072967394.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:28 Heat of formation + Delta-G solvation = -79.200602 kcal Electronic energy + Delta-G solvation = -21070.357640 eV Core-core repulsion = 17810.231008 eV Total energy + Delta-G solvation = -3260.126632 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.08975 -39.33224 -38.63854 -36.12203 -34.75592 -32.99743 -31.77567 -31.00140 -28.22881 -27.83003 -26.57770 -24.94903 -23.45369 -22.26087 -21.37853 -19.95449 -18.79366 -17.76890 -17.32281 -17.08122 -17.00096 -16.37017 -16.17002 -15.81498 -15.46612 -15.39575 -15.20727 -14.68919 -14.39421 -14.22841 -13.71670 -13.34922 -13.27517 -13.10432 -12.96352 -12.86215 -12.72453 -12.54152 -12.08232 -12.05595 -11.95408 -11.47886 -11.38725 -11.23169 -10.58242 -10.40718 -10.11323 -9.89848 -9.74536 -8.45462 -8.44041 -6.23110 0.05268 0.54855 1.27011 1.38340 1.44229 1.65566 2.04346 2.17980 2.30044 2.85548 2.89146 3.06169 3.26097 3.79834 3.98964 4.04528 4.11480 4.27709 4.38059 4.51235 4.55476 4.62633 4.64011 4.64957 4.70929 4.83333 4.86860 4.95980 5.03088 5.13219 5.34547 5.37516 5.46979 5.57291 5.62014 5.68210 6.10736 6.17242 6.23777 6.68341 6.96684 7.40274 8.61188 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.022143 B = 0.004100 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.216609 B = 6827.919547 C = 7930.379082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.064 3.936 4 C 0.142 3.858 5 H 0.082 0.918 6 C -0.152 4.152 7 N -0.708 5.708 8 C 0.546 3.454 9 O -0.556 6.556 10 C -0.183 4.183 11 C -0.054 4.054 12 C -0.158 4.158 13 C -0.070 4.070 14 C -0.175 4.175 15 C -0.073 4.073 16 S 0.066 5.934 17 C -0.604 4.604 18 H 0.094 0.906 19 C 0.025 3.975 20 N -0.905 5.905 21 Si 0.993 3.007 22 H -0.262 1.262 23 H -0.274 1.274 24 H -0.260 1.260 25 H 0.050 0.950 26 H 0.095 0.905 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.028 0.972 32 H 0.069 0.931 33 H 0.412 0.588 34 H 0.157 0.843 35 H 0.166 0.834 36 H 0.150 0.850 37 H 0.119 0.881 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.911 -7.744 0.394 22.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.324 6.324 3 C -0.013 4.013 4 C 0.037 3.963 5 H 0.100 0.900 6 C -0.210 4.210 7 N -0.362 5.362 8 C 0.335 3.665 9 O -0.436 6.436 10 C -0.196 4.196 11 C -0.074 4.074 12 C -0.181 4.181 13 C -0.090 4.090 14 C -0.201 4.201 15 C -0.191 4.191 16 S 0.325 5.675 17 C -0.751 4.751 18 H 0.112 0.888 19 C -0.181 4.181 20 N -0.540 5.540 21 Si 0.814 3.186 22 H -0.187 1.187 23 H -0.198 1.198 24 H -0.184 1.184 25 H 0.069 0.931 26 H 0.114 0.886 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.047 0.953 32 H 0.088 0.912 33 H 0.250 0.750 34 H 0.174 0.826 35 H 0.183 0.817 36 H 0.168 0.832 37 H 0.137 0.863 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.109 -6.354 -1.302 21.129 hybrid contribution 1.152 -0.478 1.501 1.951 sum -18.957 -6.833 0.199 20.152 Atomic orbital electron populations 1.22919 0.79366 1.03803 1.00909 1.87862 1.21398 1.27545 1.95615 1.22755 0.90510 0.85507 1.02568 1.21083 0.93649 0.97550 0.83972 0.90042 1.22002 1.00026 1.01110 0.97872 1.45712 1.13660 1.51546 1.25286 1.18507 0.82285 0.80719 0.84989 1.90775 1.53730 1.39124 1.59955 1.19526 0.94870 1.07022 0.98189 1.21428 0.98535 0.93167 0.94274 1.21318 0.96534 1.02995 0.97204 1.21541 0.93678 0.94732 0.99098 1.21454 1.01493 1.01534 0.95574 1.23001 0.97670 1.00005 0.98440 1.84906 1.00735 1.48738 1.33154 1.24232 1.00017 1.27285 1.23564 0.88832 1.26148 1.02689 0.93164 0.96110 1.70123 1.31327 1.22907 1.29639 0.85089 0.76071 0.78860 0.78593 1.18677 1.19847 1.18406 0.93137 0.88609 0.93145 0.91596 0.89828 0.90103 0.95292 0.91227 0.75033 0.82552 0.81698 0.83217 0.86305 0.91513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.40 -6.89 9.55 -148.98 -1.42 -8.31 16 3 C 0.06 1.08 5.68 71.98 0.41 1.49 16 4 C 0.14 3.59 2.98 44.99 0.13 3.73 16 5 H 0.08 2.40 7.58 -2.39 -0.02 2.38 16 6 C -0.15 -3.89 9.29 71.98 0.67 -3.22 16 7 N -0.71 -20.29 5.01 -445.78 -2.23 -22.52 16 8 C 0.55 21.93 7.71 86.67 0.67 22.60 16 9 O -0.56 -27.87 13.43 -4.06 -0.05 -27.92 16 10 C -0.18 -7.28 5.89 -19.95 -0.12 -7.39 16 11 C -0.05 -1.53 9.53 22.52 0.21 -1.32 16 12 C -0.16 -4.01 10.02 22.27 0.22 -3.79 16 13 C -0.07 -2.14 10.03 22.29 0.22 -1.92 16 14 C -0.18 -7.43 9.22 22.40 0.21 -7.22 16 15 C -0.07 -3.50 6.14 23.04 0.14 -3.36 16 16 S 0.07 3.87 18.56 -56.49 -1.05 2.82 16 17 C -0.60 -35.85 9.00 67.96 0.61 -35.24 16 18 H 0.09 5.22 4.98 -2.91 -0.01 5.21 16 19 C 0.02 1.42 5.49 84.87 0.47 1.89 16 20 N -0.91 -56.07 13.22 21.65 0.29 -55.78 16 21 Si 0.99 44.40 29.55 68.60 2.03 46.43 16 22 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 24 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 25 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 27 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 1.69 7.56 -2.39 -0.02 1.67 16 33 H 0.41 9.26 6.41 -92.71 -0.59 8.66 16 34 H 0.16 3.02 6.40 -2.91 -0.02 3.00 16 35 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 36 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 37 H 0.12 5.43 5.04 -2.91 -0.01 5.41 16 38 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -78.86 332.03 3.14 -75.72 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.49 Total: 21.81 kcal Atomic # 6 Polarization: -37.34 SS G_CDS: 5.10 Total: -32.24 kcal Atomic # 7 Polarization: -76.36 SS G_CDS: -1.95 Total: -78.31 kcal Atomic # 8 Polarization: -34.76 SS G_CDS: -1.48 Total: -36.23 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: 3.87 SS G_CDS: -1.05 Total: 2.82 kcal Total: -78.86 3.14 -75.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072967394.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.476 kcal (2) G-P(sol) polarization free energy of solvation -78.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds