Wall clock time and date at job start Tue Mar 31 2020 07:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99852 * 2 1 4 4 C 1.52995 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.47178 * 185.00334 * 4 3 2 6 6 C 1.53005 * 109.47074 * 304.99919 * 4 3 2 7 7 N 1.46499 * 109.47029 * 65.00159 * 4 3 2 8 8 C 1.34778 * 119.99867 * 155.00440 * 7 4 3 9 9 O 1.21609 * 119.99939 * 359.97438 * 8 7 4 10 10 C 1.47421 * 119.99900 * 180.02562 * 8 7 4 11 11 C 1.39681 * 120.21901 * 359.96940 * 10 8 7 12 12 C 1.37808 * 119.94286 * 180.02562 * 11 10 8 13 13 C 1.38654 * 120.37767 * 0.02562 * 12 11 10 14 14 C 1.37909 * 120.44334 * 359.97438 * 13 12 11 15 15 C 1.39109 * 120.04959 * 0.02562 * 14 13 12 16 16 S 1.76204 * 120.19269 * 179.97438 * 15 14 13 17 17 C 1.76202 * 99.99694 * 6.88400 * 16 15 14 18 18 H 1.07998 * 120.00125 * 5.65292 * 17 16 15 19 19 C 1.38802 * 119.99933 * 185.66292 * 17 16 15 20 20 N 1.31556 * 120.00301 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00198 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46752 * 89.99632 * 21 19 17 23 23 H 1.48490 * 109.47122 * 209.99672 * 21 19 17 24 24 H 1.48502 * 109.46765 * 329.99906 * 21 19 17 25 25 H 1.09001 * 109.46887 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46862 * 299.99776 * 1 2 3 27 27 H 1.08990 * 109.47323 * 59.99638 * 1 2 3 28 28 H 1.09001 * 109.47163 * 59.99778 * 3 2 1 29 29 H 1.09000 * 109.47158 * 300.00502 * 3 2 1 30 30 H 1.08999 * 109.46647 * 180.02562 * 6 4 3 31 31 H 1.08999 * 109.47147 * 300.00269 * 6 4 3 32 32 H 1.08997 * 109.47069 * 60.00211 * 6 4 3 33 33 H 0.96999 * 120.00020 * 334.99595 * 7 4 3 34 34 H 1.08003 * 120.02265 * 0.02562 * 11 10 8 35 35 H 1.07998 * 119.80890 * 180.02562 * 12 11 10 36 36 H 1.08007 * 119.77710 * 180.27598 * 13 12 11 37 37 H 1.08005 * 119.97866 * 180.02562 * 14 13 12 38 38 H 0.96996 * 120.00217 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9785 2.1766 0.0890 6 6 3.9790 0.3194 1.1807 7 7 3.9756 0.5645 -1.2528 8 6 5.2195 0.7946 -1.7179 9 8 5.9762 1.5175 -1.0984 10 6 5.6623 0.1710 -2.9782 11 6 4.7967 -0.6597 -3.6936 12 6 5.2167 -1.2401 -4.8708 13 6 6.4960 -1.0052 -5.3510 14 6 7.3636 -0.1878 -4.6574 15 6 6.9585 0.4075 -3.4671 16 16 8.0641 1.4520 -2.5775 17 6 9.3954 1.5392 -3.7286 18 1 9.2957 1.0879 -4.7047 19 6 10.5722 2.1878 -3.3808 20 7 10.6935 2.7379 -2.1919 21 14 11.9838 2.2797 -4.6008 22 1 11.8444 3.5054 -5.4276 23 1 13.2725 2.3233 -3.8643 24 1 11.9565 1.0835 -5.4803 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 5.0656 0.2338 1.1804 31 1 3.6514 0.7809 2.1123 32 1 3.5360 -0.6724 1.0911 33 1 3.3719 -0.0118 -1.7470 34 1 3.7991 -0.8468 -3.3244 35 1 4.5455 -1.8817 -5.4224 36 1 6.8136 -1.4615 -6.2770 37 1 8.3583 -0.0096 -5.0386 38 1 11.5157 3.1915 -1.9490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072967395.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:31 Heat of formation + Delta-G solvation = -56.972195 kcal Electronic energy + Delta-G solvation = -21068.713536 eV Core-core repulsion = 17809.550800 eV Total energy + Delta-G solvation = -3259.162735 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.65180 -38.26683 -37.32417 -34.88411 -32.72819 -31.61190 -30.23585 -29.65805 -27.47248 -25.83076 -25.79818 -23.50646 -21.96478 -21.00494 -19.96740 -18.20678 -17.18590 -16.79901 -16.18553 -15.84439 -15.43751 -15.16960 -14.82773 -14.36387 -14.23205 -13.92964 -13.65926 -13.19968 -12.98618 -12.85253 -12.63799 -12.21182 -11.92310 -11.83349 -11.55665 -11.25352 -11.18784 -11.17609 -10.92750 -10.89236 -10.29860 -9.92902 -9.77209 -9.59452 -9.46475 -8.73996 -8.68859 -8.29114 -8.02610 -6.50067 -6.43640 -4.13882 1.57616 2.05835 3.12301 3.14549 3.21121 3.43219 3.46638 3.58011 3.66570 4.08928 4.53253 4.74177 4.96287 4.97433 5.07220 5.12905 5.16697 5.22255 5.36758 5.40570 5.42921 5.51806 5.63130 5.63941 5.84757 5.97682 6.14401 6.18574 6.42602 6.44939 6.63680 6.81785 6.88593 6.94725 7.07536 7.16977 7.47547 7.62708 8.00575 8.18721 8.85690 9.02575 10.59609 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.022134 B = 0.004097 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.745900 B = 6833.126305 C = 7932.423305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.053 3.947 4 C 0.149 3.851 5 H 0.100 0.900 6 C -0.159 4.159 7 N -0.730 5.730 8 C 0.553 3.447 9 O -0.511 6.511 10 C -0.177 4.177 11 C -0.060 4.060 12 C -0.187 4.187 13 C -0.077 4.077 14 C -0.154 4.154 15 C -0.056 4.056 16 S 0.184 5.816 17 C -0.596 4.596 18 H 0.091 0.909 19 C 0.083 3.917 20 N -0.858 5.858 21 Si 0.919 3.081 22 H -0.273 1.273 23 H -0.280 1.280 24 H -0.268 1.268 25 H 0.085 0.915 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.398 0.602 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.139 0.861 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.494 -5.224 1.614 18.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C -0.025 4.025 4 C 0.044 3.956 5 H 0.118 0.882 6 C -0.217 4.217 7 N -0.385 5.385 8 C 0.342 3.658 9 O -0.388 6.388 10 C -0.192 4.192 11 C -0.080 4.080 12 C -0.212 4.212 13 C -0.099 4.099 14 C -0.179 4.179 15 C -0.176 4.176 16 S 0.448 5.552 17 C -0.742 4.742 18 H 0.108 0.892 19 C -0.128 4.128 20 N -0.491 5.491 21 Si 0.744 3.256 22 H -0.199 1.199 23 H -0.205 1.205 24 H -0.192 1.192 25 H 0.103 0.897 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.234 0.766 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.156 0.844 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.480 -3.966 3.475 17.303 hybrid contribution 0.369 -0.680 -2.278 2.405 sum -16.111 -4.646 1.198 16.810 Atomic orbital electron populations 1.22736 0.81185 1.02710 0.99907 1.87907 1.19490 1.27709 1.95394 1.22905 0.93505 0.85045 1.00998 1.20915 0.90948 0.98693 0.85033 0.88198 1.22079 1.02430 1.00537 0.96699 1.45864 1.15389 1.52371 1.24890 1.18324 0.81258 0.81068 0.85145 1.90774 1.52417 1.37185 1.58472 1.19130 0.94999 1.07050 0.98024 1.20919 0.97397 0.95152 0.94570 1.20632 0.97022 1.05199 0.98325 1.21081 0.93700 0.96711 0.98430 1.21431 1.01122 0.99542 0.95815 1.23094 0.97345 0.99028 0.98162 1.84752 1.06036 1.45328 1.19093 1.24063 1.03293 1.42570 1.04310 0.89178 1.25092 0.98213 0.93676 0.95770 1.69976 1.27686 1.32294 1.19150 0.86155 0.80022 0.79072 0.80341 1.19894 1.20499 1.19244 0.89671 0.94168 0.94105 0.91962 0.92581 0.91718 0.92333 0.91806 0.76644 0.87109 0.87111 0.87058 0.84400 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.94 9.55 -35.23 -0.34 -4.28 16 3 C 0.05 0.52 5.68 37.16 0.21 0.73 16 4 C 0.15 1.94 2.98 -67.93 -0.20 1.74 16 5 H 0.10 1.43 7.58 -51.93 -0.39 1.03 16 6 C -0.16 -2.06 9.29 37.16 0.35 -1.71 16 7 N -0.73 -10.91 5.01 -54.88 -0.27 -11.19 16 8 C 0.55 10.88 7.71 -12.52 -0.10 10.79 16 9 O -0.51 -11.95 13.43 5.27 0.07 -11.88 16 10 C -0.18 -3.57 5.89 -104.75 -0.62 -4.19 16 11 C -0.06 -0.99 9.53 -39.20 -0.37 -1.36 16 12 C -0.19 -2.95 10.02 -39.59 -0.40 -3.35 16 13 C -0.08 -1.34 10.02 -39.55 -0.40 -1.74 16 14 C -0.15 -3.27 9.22 -39.38 -0.36 -3.63 16 15 C -0.06 -1.31 6.15 -38.39 -0.24 -1.54 16 16 S 0.18 4.97 18.56 -107.50 -2.00 2.97 16 17 C -0.60 -16.56 9.00 30.94 0.28 -16.28 16 18 H 0.09 2.38 4.98 -52.49 -0.26 2.12 16 19 C 0.08 2.30 5.49 -17.46 -0.10 2.20 16 20 N -0.86 -24.88 13.22 55.49 0.73 -24.15 16 21 Si 0.92 20.81 29.55 -169.99 -5.02 15.78 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.81 7.56 -51.93 -0.39 0.42 16 33 H 0.40 5.13 6.41 -40.82 -0.26 4.87 16 34 H 0.11 1.42 6.40 -52.48 -0.34 1.09 16 35 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 37 H 0.14 3.04 5.04 -52.48 -0.26 2.78 16 38 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 332.03 15.07 5.00 5.00 Total: -1.00 -32.06 332.03 -7.50 -39.57 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -4.85 Total: 5.18 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -0.83 Total: -17.01 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 0.46 Total: -35.33 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.27 Total: -16.16 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 4.97 SS G_CDS: -2.00 Total: 2.97 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.06 -7.50 -39.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072967395.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.405 kcal (2) G-P(sol) polarization free energy of solvation -32.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds