Wall clock time and date at job start Tue Mar 31 2020 07:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99852 * 2 1 4 4 C 1.52995 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.47178 * 185.00334 * 4 3 2 6 6 C 1.53005 * 109.47074 * 304.99919 * 4 3 2 7 7 N 1.46499 * 109.47029 * 65.00159 * 4 3 2 8 8 C 1.34778 * 119.99867 * 155.00440 * 7 4 3 9 9 O 1.21609 * 119.99939 * 359.97438 * 8 7 4 10 10 C 1.47421 * 119.99900 * 180.02562 * 8 7 4 11 11 C 1.39681 * 120.21901 * 359.96940 * 10 8 7 12 12 C 1.37808 * 119.94286 * 180.02562 * 11 10 8 13 13 C 1.38654 * 120.37767 * 0.02562 * 12 11 10 14 14 C 1.37909 * 120.44334 * 359.97438 * 13 12 11 15 15 C 1.39109 * 120.04959 * 0.02562 * 14 13 12 16 16 S 1.76204 * 120.19269 * 179.97438 * 15 14 13 17 17 C 1.76202 * 99.99694 * 6.88400 * 16 15 14 18 18 H 1.07998 * 120.00125 * 5.65292 * 17 16 15 19 19 C 1.38802 * 119.99933 * 185.66292 * 17 16 15 20 20 N 1.31556 * 120.00301 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00198 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46752 * 89.99632 * 21 19 17 23 23 H 1.48490 * 109.47122 * 209.99672 * 21 19 17 24 24 H 1.48502 * 109.46765 * 329.99906 * 21 19 17 25 25 H 1.09001 * 109.46887 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46862 * 299.99776 * 1 2 3 27 27 H 1.08990 * 109.47323 * 59.99638 * 1 2 3 28 28 H 1.09001 * 109.47163 * 59.99778 * 3 2 1 29 29 H 1.09000 * 109.47158 * 300.00502 * 3 2 1 30 30 H 1.08999 * 109.46647 * 180.02562 * 6 4 3 31 31 H 1.08999 * 109.47147 * 300.00269 * 6 4 3 32 32 H 1.08997 * 109.47069 * 60.00211 * 6 4 3 33 33 H 0.96999 * 120.00020 * 334.99595 * 7 4 3 34 34 H 1.08003 * 120.02265 * 0.02562 * 11 10 8 35 35 H 1.07998 * 119.80890 * 180.02562 * 12 11 10 36 36 H 1.08007 * 119.77710 * 180.27598 * 13 12 11 37 37 H 1.08005 * 119.97866 * 180.02562 * 14 13 12 38 38 H 0.96996 * 120.00217 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9785 2.1766 0.0890 6 6 3.9790 0.3194 1.1807 7 7 3.9756 0.5645 -1.2528 8 6 5.2195 0.7946 -1.7179 9 8 5.9762 1.5175 -1.0984 10 6 5.6623 0.1710 -2.9782 11 6 4.7967 -0.6597 -3.6936 12 6 5.2167 -1.2401 -4.8708 13 6 6.4960 -1.0052 -5.3510 14 6 7.3636 -0.1878 -4.6574 15 6 6.9585 0.4075 -3.4671 16 16 8.0641 1.4520 -2.5775 17 6 9.3954 1.5392 -3.7286 18 1 9.2957 1.0879 -4.7047 19 6 10.5722 2.1878 -3.3808 20 7 10.6935 2.7379 -2.1919 21 14 11.9838 2.2797 -4.6008 22 1 11.8444 3.5054 -5.4276 23 1 13.2725 2.3233 -3.8643 24 1 11.9565 1.0835 -5.4803 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 5.0656 0.2338 1.1804 31 1 3.6514 0.7809 2.1123 32 1 3.5360 -0.6724 1.0911 33 1 3.3719 -0.0118 -1.7470 34 1 3.7991 -0.8468 -3.3244 35 1 4.5455 -1.8817 -5.4224 36 1 6.8136 -1.4615 -6.2770 37 1 8.3583 -0.0096 -5.0386 38 1 11.5157 3.1915 -1.9490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072967395.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:30 Heat of formation + Delta-G solvation = -79.230858 kcal Electronic energy + Delta-G solvation = -21069.678744 eV Core-core repulsion = 17809.550800 eV Total energy + Delta-G solvation = -3260.127944 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.09048 -39.33212 -38.63830 -36.12191 -34.75615 -32.99793 -31.77587 -31.00163 -28.22887 -27.83173 -26.57804 -24.94973 -23.45413 -22.26070 -21.37867 -19.95506 -18.79436 -17.76770 -17.32531 -17.08266 -17.00086 -16.36848 -16.17240 -15.81117 -15.47132 -15.39533 -15.20804 -14.68775 -14.38972 -14.22822 -13.73052 -13.32374 -13.29968 -13.09432 -12.98005 -12.86350 -12.72061 -12.53551 -12.07365 -12.05282 -11.95381 -11.47600 -11.39478 -11.23565 -10.58243 -10.40708 -10.11747 -9.88468 -9.75462 -8.45289 -8.44244 -6.23192 0.05165 0.54767 1.27110 1.36814 1.45510 1.65684 2.04323 2.17836 2.29999 2.85434 2.89175 3.06102 3.26136 3.79822 3.98910 4.04468 4.11456 4.27642 4.38082 4.51217 4.55431 4.62607 4.63973 4.64989 4.70890 4.83334 4.86790 4.95987 5.03057 5.13166 5.34485 5.37636 5.47004 5.57250 5.62006 5.68198 6.10884 6.17312 6.23695 6.68334 6.96746 7.40265 8.61270 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.022134 B = 0.004097 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.745900 B = 6833.126305 C = 7932.423305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.064 3.936 4 C 0.142 3.858 5 H 0.082 0.918 6 C -0.152 4.152 7 N -0.708 5.708 8 C 0.546 3.454 9 O -0.555 6.555 10 C -0.183 4.183 11 C -0.054 4.054 12 C -0.157 4.157 13 C -0.070 4.070 14 C -0.175 4.175 15 C -0.073 4.073 16 S 0.065 5.935 17 C -0.603 4.603 18 H 0.094 0.906 19 C 0.024 3.976 20 N -0.905 5.905 21 Si 0.994 3.006 22 H -0.266 1.266 23 H -0.273 1.273 24 H -0.258 1.258 25 H 0.096 0.904 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.028 0.972 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.412 0.588 34 H 0.157 0.843 35 H 0.166 0.834 36 H 0.150 0.850 37 H 0.119 0.881 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.001 -7.582 -0.505 22.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.324 6.324 3 C -0.013 4.013 4 C 0.037 3.963 5 H 0.100 0.900 6 C -0.210 4.210 7 N -0.362 5.362 8 C 0.335 3.665 9 O -0.436 6.436 10 C -0.196 4.196 11 C -0.074 4.074 12 C -0.180 4.180 13 C -0.091 4.091 14 C -0.200 4.200 15 C -0.191 4.191 16 S 0.324 5.676 17 C -0.750 4.750 18 H 0.112 0.888 19 C -0.182 4.182 20 N -0.540 5.540 21 Si 0.815 3.185 22 H -0.191 1.191 23 H -0.198 1.198 24 H -0.181 1.181 25 H 0.114 0.886 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.047 0.953 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.250 0.750 34 H 0.175 0.825 35 H 0.183 0.817 36 H 0.168 0.832 37 H 0.137 0.863 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.114 -6.400 1.320 21.149 hybrid contribution 1.037 -0.185 -1.677 1.980 sum -19.077 -6.585 -0.357 20.185 Atomic orbital electron populations 1.22921 0.79364 1.03804 1.00909 1.87864 1.21398 1.27539 1.95616 1.22754 0.90519 0.85508 1.02564 1.21082 0.93646 0.97555 0.83977 0.90044 1.22001 1.00022 1.01114 0.97865 1.45710 1.13732 1.51514 1.25253 1.18503 0.82291 0.80635 0.85059 1.90774 1.53996 1.39149 1.59659 1.19527 0.94478 1.07138 0.98463 1.21429 0.98540 0.93176 0.94254 1.21316 0.96518 1.03019 0.97183 1.21538 0.93677 0.94772 0.99064 1.21450 1.01483 1.01175 0.95938 1.23003 0.97641 0.99589 0.98856 1.84918 1.09213 1.51016 1.22455 1.24259 1.03547 1.42789 1.04359 0.88820 1.26150 1.01015 0.93239 0.97751 1.70131 1.28476 1.34013 1.21399 0.85033 0.76292 0.79452 0.77767 1.19100 1.19795 1.18134 0.88603 0.93127 0.93157 0.89830 0.91610 0.95293 0.90102 0.91216 0.75031 0.82548 0.81693 0.83237 0.86335 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.40 -6.89 9.55 -148.98 -1.42 -8.31 16 3 C 0.06 1.08 5.68 71.98 0.41 1.49 16 4 C 0.14 3.59 2.98 44.99 0.13 3.73 16 5 H 0.08 2.40 7.58 -2.38 -0.02 2.38 16 6 C -0.15 -3.88 9.29 71.98 0.67 -3.21 16 7 N -0.71 -20.28 5.01 -445.80 -2.23 -22.52 16 8 C 0.55 21.93 7.71 86.66 0.67 22.60 16 9 O -0.56 -27.86 13.43 -4.06 -0.05 -27.91 16 10 C -0.18 -7.27 5.89 -19.95 -0.12 -7.39 16 11 C -0.05 -1.53 9.53 22.52 0.21 -1.32 16 12 C -0.16 -4.01 10.02 22.27 0.22 -3.78 16 13 C -0.07 -2.15 10.02 22.29 0.22 -1.92 16 14 C -0.18 -7.43 9.22 22.40 0.21 -7.23 16 15 C -0.07 -3.49 6.15 23.04 0.14 -3.35 16 16 S 0.07 3.83 18.56 -56.49 -1.05 2.78 16 17 C -0.60 -35.73 9.00 67.95 0.61 -35.12 16 18 H 0.09 5.23 4.98 -2.91 -0.01 5.22 16 19 C 0.02 1.39 5.49 84.87 0.47 1.86 16 20 N -0.91 -56.07 13.22 21.64 0.29 -55.78 16 21 Si 0.99 44.41 29.55 68.60 2.03 46.44 16 22 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 25 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 1.68 7.56 -2.39 -0.02 1.67 16 33 H 0.41 9.25 6.41 -92.71 -0.59 8.66 16 34 H 0.16 3.01 6.40 -2.91 -0.02 3.00 16 35 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 36 H 0.15 3.51 8.06 -2.91 -0.02 3.48 16 37 H 0.12 5.43 5.04 -2.91 -0.01 5.42 16 38 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -78.85 332.03 3.14 -75.71 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.49 Total: 21.73 kcal Atomic # 6 Polarization: -37.23 SS G_CDS: 5.10 Total: -32.14 kcal Atomic # 7 Polarization: -76.35 SS G_CDS: -1.95 Total: -78.30 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -1.48 Total: -36.22 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: 3.83 SS G_CDS: -1.05 Total: 2.78 kcal Total: -78.85 3.14 -75.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072967395.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.525 kcal (2) G-P(sol) polarization free energy of solvation -78.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds