Wall clock time and date at job start Tue Mar 31 2020 07:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46950 * 2 1 4 4 C 1.52997 * 109.47214 * 119.99987 * 2 1 3 5 5 O 1.42899 * 109.47043 * 305.00174 * 4 2 1 6 6 S 1.81398 * 109.47226 * 240.00120 * 2 1 3 7 7 C 1.81398 * 102.99955 * 68.84469 * 6 2 1 8 8 C 1.50704 * 109.47434 * 184.91631 * 7 6 2 9 9 O 1.21285 * 119.99364 * 354.96660 * 8 7 6 10 10 N 1.34777 * 120.00288 * 174.96163 * 8 7 6 11 11 C 1.37139 * 119.99916 * 3.30580 * 10 8 7 12 12 H 1.08005 * 119.99957 * 305.58542 * 11 10 8 13 13 C 1.38881 * 120.00269 * 125.58000 * 11 10 8 14 14 N 1.31418 * 120.00615 * 181.28769 * 13 11 10 15 15 Si 1.86811 * 119.99696 * 1.29432 * 13 11 10 16 16 H 1.48503 * 109.46735 * 95.25743 * 15 13 11 17 17 H 1.48500 * 109.46850 * 215.25322 * 15 13 11 18 18 H 1.48496 * 109.46946 * 335.25869 * 15 13 11 19 19 C 1.39787 * 120.00000 * 183.31095 * 10 8 7 20 20 C 1.38951 * 120.07736 * 171.65466 * 19 10 8 21 21 C 1.38087 * 119.92047 * 179.97438 * 20 19 10 22 22 C 1.38304 * 120.07869 * 359.97438 * 21 20 19 23 23 C 1.38304 * 120.15487 * 359.97438 * 22 21 20 24 24 C 1.38085 * 120.07831 * 0.02562 * 23 22 21 25 25 H 1.08995 * 109.47401 * 304.96469 * 1 2 3 26 26 H 1.09000 * 109.47286 * 64.96966 * 1 2 3 27 27 H 1.09011 * 109.46861 * 184.96836 * 1 2 3 28 28 H 1.09001 * 109.46907 * 64.99781 * 4 2 1 29 29 H 1.08998 * 109.47460 * 185.00002 * 4 2 1 30 30 H 0.96703 * 114.00070 * 179.97438 * 5 4 2 31 31 H 1.09003 * 109.47218 * 64.92121 * 7 6 2 32 32 H 1.08998 * 109.47461 * 304.92261 * 7 6 2 33 33 H 0.97004 * 120.00409 * 179.97438 * 14 13 11 34 34 H 1.08005 * 120.04132 * 359.69489 * 20 19 10 35 35 H 1.08004 * 119.95813 * 179.97438 * 21 20 19 36 36 H 1.07997 * 119.92083 * 179.97438 * 22 21 20 37 37 H 1.08001 * 119.96297 * 179.97438 * 23 22 21 38 38 H 1.08006 * 120.03547 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.4702 -0.1188 2.4130 6 16 2.1347 -0.8551 -1.4811 7 6 1.6693 0.2738 -2.8226 8 6 2.0015 -0.3587 -4.1495 9 8 2.5854 -1.4212 -4.1855 10 7 1.6498 0.2561 -5.2961 11 6 1.0503 1.4890 -5.2571 12 1 0.1578 1.6370 -4.6671 13 6 1.5909 2.5471 -5.9760 14 7 1.0311 3.7347 -5.9186 15 14 3.1139 2.2822 -7.0249 16 1 2.7077 2.0078 -8.4268 17 1 3.9609 3.5013 -6.9845 18 1 3.8834 1.1269 -6.4974 19 6 1.8958 -0.3628 -6.5251 20 6 1.3822 0.1833 -7.6950 21 6 1.6277 -0.4305 -8.9074 22 6 2.3843 -1.5872 -8.9581 23 6 2.8980 -2.1329 -7.7956 24 6 2.6564 -1.5244 -6.5798 25 1 -0.3634 0.5889 0.8421 26 1 -0.3634 0.4348 -0.9311 27 1 -0.3633 -1.0239 0.0890 28 1 1.7516 -1.7715 1.2055 29 1 3.1263 -0.6443 1.2952 30 1 1.7500 -0.5266 3.2440 31 1 2.2197 1.2089 -2.7180 32 1 0.5992 0.4748 -2.7736 33 1 1.4090 4.4739 -6.4204 34 1 0.7879 1.0842 -7.6558 35 1 1.2285 -0.0068 -9.8171 36 1 2.5744 -2.0654 -9.9075 37 1 3.4880 -3.0364 -7.8388 38 1 3.0575 -1.9514 -5.6725 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079091557.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:46 Heat of formation + Delta-G solvation = -34.877123 kcal Electronic energy + Delta-G solvation = -21489.382117 eV Core-core repulsion = 18231.177496 eV Total energy + Delta-G solvation = -3258.204621 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.14481 -37.62442 -37.35487 -35.23945 -33.08889 -32.31168 -30.48739 -30.15670 -28.09769 -26.41588 -25.32677 -22.24845 -21.73799 -21.33436 -19.53574 -18.23525 -17.82370 -16.58751 -16.00282 -15.80637 -15.65693 -15.23649 -14.89636 -14.32923 -14.10711 -13.76959 -13.66082 -13.29425 -12.95812 -12.88069 -12.80553 -12.51435 -12.29047 -12.01408 -11.75703 -11.49803 -11.35668 -11.07591 -10.98285 -10.72762 -10.36291 -10.16043 -10.14589 -9.59269 -9.42441 -9.08049 -8.56291 -8.08731 -7.40673 -7.14462 -6.64275 -4.62104 1.66953 1.96930 2.10886 2.77250 3.09583 3.19509 3.29273 3.40300 4.00080 4.07778 4.24658 4.52609 4.74993 4.76893 4.93064 5.23628 5.35654 5.49692 5.52705 5.57006 5.60027 5.67553 5.82642 5.84938 5.96102 6.00377 6.23548 6.26778 6.33608 6.48853 6.74866 7.10981 7.17382 7.24485 7.29728 7.43202 7.64501 7.86901 8.07471 8.64746 8.94404 9.22899 10.37342 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.020374 B = 0.004748 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.943656 B = 5895.449481 C = 6795.497022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.080 4.080 3 H 0.092 0.908 4 C 0.100 3.900 5 O -0.569 6.569 6 S -0.194 6.194 7 C -0.089 4.089 8 C 0.516 3.484 9 O -0.541 6.541 10 N -0.403 5.403 11 C -0.374 4.374 12 H 0.109 0.891 13 C 0.084 3.916 14 N -0.855 5.855 15 Si 0.872 3.128 16 H -0.253 1.253 17 H -0.289 1.289 18 H -0.257 1.257 19 C 0.160 3.840 20 C -0.160 4.160 21 C -0.105 4.105 22 C -0.170 4.170 23 C -0.108 4.108 24 C -0.183 4.183 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.380 0.620 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.280 0.720 34 H 0.139 0.861 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.247 -5.934 6.970 9.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.209 4.209 3 H 0.110 0.890 4 C 0.021 3.979 5 O -0.375 6.375 6 S 0.032 5.968 7 C -0.239 4.239 8 C 0.306 3.694 9 O -0.423 6.423 10 N -0.113 5.113 11 C -0.500 4.500 12 H 0.127 0.873 13 C -0.126 4.126 14 N -0.487 5.487 15 Si 0.698 3.302 16 H -0.177 1.177 17 H -0.217 1.217 18 H -0.181 1.181 19 C 0.063 3.937 20 C -0.180 4.180 21 C -0.124 4.124 22 C -0.189 4.189 23 C -0.127 4.127 24 C -0.202 4.202 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.227 0.773 31 H 0.133 0.867 32 H 0.128 0.872 33 H 0.091 0.909 34 H 0.157 0.843 35 H 0.132 0.868 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 1.740 -6.772 6.460 9.519 hybrid contribution 0.200 1.222 -0.359 1.290 sum 1.940 -5.549 6.101 8.472 Atomic orbital electron populations 1.21931 0.92711 1.02833 1.02282 1.23129 0.99992 1.02718 0.95094 0.89009 1.21759 0.96580 0.95578 0.83966 1.86464 1.73177 1.61716 1.16137 1.86954 1.78547 1.32480 0.98818 1.23278 1.06456 1.01206 0.92991 1.19931 0.79354 0.84913 0.85186 1.90268 1.42446 1.23501 1.86112 1.41295 1.50965 1.17384 1.01671 1.19014 1.12341 0.82605 1.36047 0.87311 1.25475 0.96830 0.94337 0.95971 1.69641 1.39618 1.00630 1.38859 0.86962 0.82625 0.78317 0.82250 1.17749 1.21660 1.18091 1.18444 0.95792 0.92610 0.86825 1.21025 1.03112 1.02582 0.91281 1.20825 0.98945 0.95724 0.96878 1.20929 1.02322 0.97860 0.97821 1.21025 0.99685 0.99455 0.92534 1.22753 1.00333 0.96178 1.00946 0.91407 0.92327 0.91828 0.92741 0.92693 0.77304 0.86730 0.87238 0.90907 0.84346 0.86798 0.87277 0.86865 0.80489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.88 37.16 0.33 -1.46 16 2 C -0.08 -1.08 3.14 -26.73 -0.08 -1.16 16 3 H 0.09 1.26 8.14 -51.92 -0.42 0.83 16 4 C 0.10 1.11 6.55 37.16 0.24 1.36 16 5 O -0.57 -5.88 12.88 -35.23 -0.45 -6.33 16 6 S -0.19 -3.23 20.27 -107.50 -2.18 -5.41 16 7 C -0.09 -1.66 5.10 36.01 0.18 -1.48 16 8 C 0.52 11.53 7.59 -10.98 -0.08 11.44 16 9 O -0.54 -12.62 12.29 5.55 0.07 -12.55 16 10 N -0.40 -9.58 2.30 -58.98 -0.14 -9.72 16 11 C -0.37 -9.25 8.01 -14.94 -0.12 -9.37 16 12 H 0.11 2.78 7.69 -52.48 -0.40 2.37 16 13 C 0.08 2.14 4.61 -17.49 -0.08 2.06 16 14 N -0.85 -22.43 13.96 55.49 0.77 -21.65 16 15 Si 0.87 20.65 23.85 -169.99 -4.05 16.60 16 16 H -0.25 -5.76 6.14 56.52 0.35 -5.41 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.26 -6.44 6.48 56.52 0.37 -6.07 16 19 C 0.16 3.72 4.13 -83.70 -0.35 3.38 16 20 C -0.16 -3.54 5.58 -39.37 -0.22 -3.76 16 21 C -0.10 -2.03 9.76 -39.61 -0.39 -2.41 16 22 C -0.17 -3.05 10.04 -39.53 -0.40 -3.45 16 23 C -0.11 -2.05 10.04 -39.61 -0.40 -2.45 16 24 C -0.18 -4.02 9.03 -39.37 -0.36 -4.37 16 25 H 0.07 0.84 7.73 -51.93 -0.40 0.44 16 26 H 0.06 0.79 6.87 -51.93 -0.36 0.43 16 27 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.38 2.05 9.12 45.56 0.42 2.47 16 31 H 0.11 2.12 8.14 -51.92 -0.42 1.70 16 32 H 0.11 1.96 6.60 -51.93 -0.34 1.61 16 33 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.14 3.22 5.70 -52.48 -0.30 2.92 16 35 H 0.11 1.88 8.06 -52.48 -0.42 1.46 16 36 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.18 4.06 4.59 -55.97 -0.26 3.80 16 LS Contribution 319.22 15.07 4.81 4.81 Total: -1.00 -28.85 319.22 -7.13 -35.99 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -4.25 Total: 9.94 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -1.71 Total: -11.68 kcal Atomic # 7 Polarization: -32.01 SS G_CDS: 0.64 Total: -31.37 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.39 Total: -18.88 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.05 Total: 16.60 kcal Atomic # 16 Polarization: -3.23 SS G_CDS: -2.18 Total: -5.41 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.85 -7.13 -35.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079091557.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.109 kcal (2) G-P(sol) polarization free energy of solvation -28.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds