Wall clock time and date at job start Tue Mar 31 2020 07:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46950 * 2 1 4 4 C 1.52997 * 109.47214 * 119.99987 * 2 1 3 5 5 O 1.42899 * 109.47043 * 305.00174 * 4 2 1 6 6 S 1.81398 * 109.47226 * 240.00120 * 2 1 3 7 7 C 1.81398 * 102.99955 * 68.84469 * 6 2 1 8 8 C 1.50704 * 109.47434 * 184.91631 * 7 6 2 9 9 O 1.21285 * 119.99364 * 354.96660 * 8 7 6 10 10 N 1.34777 * 120.00288 * 174.96163 * 8 7 6 11 11 C 1.37139 * 119.99916 * 3.30580 * 10 8 7 12 12 H 1.08005 * 119.99957 * 305.58542 * 11 10 8 13 13 C 1.38881 * 120.00269 * 125.58000 * 11 10 8 14 14 N 1.31418 * 120.00615 * 181.28769 * 13 11 10 15 15 Si 1.86811 * 119.99696 * 1.29432 * 13 11 10 16 16 H 1.48503 * 109.46735 * 95.25743 * 15 13 11 17 17 H 1.48500 * 109.46850 * 215.25322 * 15 13 11 18 18 H 1.48496 * 109.46946 * 335.25869 * 15 13 11 19 19 C 1.39787 * 120.00000 * 183.31095 * 10 8 7 20 20 C 1.38951 * 120.07736 * 171.65466 * 19 10 8 21 21 C 1.38087 * 119.92047 * 179.97438 * 20 19 10 22 22 C 1.38304 * 120.07869 * 359.97438 * 21 20 19 23 23 C 1.38304 * 120.15487 * 359.97438 * 22 21 20 24 24 C 1.38085 * 120.07831 * 0.02562 * 23 22 21 25 25 H 1.08995 * 109.47401 * 304.96469 * 1 2 3 26 26 H 1.09000 * 109.47286 * 64.96966 * 1 2 3 27 27 H 1.09011 * 109.46861 * 184.96836 * 1 2 3 28 28 H 1.09001 * 109.46907 * 64.99781 * 4 2 1 29 29 H 1.08998 * 109.47460 * 185.00002 * 4 2 1 30 30 H 0.96703 * 114.00070 * 179.97438 * 5 4 2 31 31 H 1.09003 * 109.47218 * 64.92121 * 7 6 2 32 32 H 1.08998 * 109.47461 * 304.92261 * 7 6 2 33 33 H 0.97004 * 120.00409 * 179.97438 * 14 13 11 34 34 H 1.08005 * 120.04132 * 359.69489 * 20 19 10 35 35 H 1.08004 * 119.95813 * 179.97438 * 21 20 19 36 36 H 1.07997 * 119.92083 * 179.97438 * 22 21 20 37 37 H 1.08001 * 119.96297 * 179.97438 * 23 22 21 38 38 H 1.08006 * 120.03547 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.4702 -0.1188 2.4130 6 16 2.1347 -0.8551 -1.4811 7 6 1.6693 0.2738 -2.8226 8 6 2.0015 -0.3587 -4.1495 9 8 2.5854 -1.4212 -4.1855 10 7 1.6498 0.2561 -5.2961 11 6 1.0503 1.4890 -5.2571 12 1 0.1578 1.6370 -4.6671 13 6 1.5909 2.5471 -5.9760 14 7 1.0311 3.7347 -5.9186 15 14 3.1139 2.2822 -7.0249 16 1 2.7077 2.0078 -8.4268 17 1 3.9609 3.5013 -6.9845 18 1 3.8834 1.1269 -6.4974 19 6 1.8958 -0.3628 -6.5251 20 6 1.3822 0.1833 -7.6950 21 6 1.6277 -0.4305 -8.9074 22 6 2.3843 -1.5872 -8.9581 23 6 2.8980 -2.1329 -7.7956 24 6 2.6564 -1.5244 -6.5798 25 1 -0.3634 0.5889 0.8421 26 1 -0.3634 0.4348 -0.9311 27 1 -0.3633 -1.0239 0.0890 28 1 1.7516 -1.7715 1.2055 29 1 3.1263 -0.6443 1.2952 30 1 1.7500 -0.5266 3.2440 31 1 2.2197 1.2089 -2.7180 32 1 0.5992 0.4748 -2.7736 33 1 1.4090 4.4739 -6.4204 34 1 0.7879 1.0842 -7.6558 35 1 1.2285 -0.0068 -9.8171 36 1 2.5744 -2.0654 -9.9075 37 1 3.4880 -3.0364 -7.8388 38 1 3.0575 -1.9514 -5.6725 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079091557.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:46 Heat of formation + Delta-G solvation = -53.549395 kcal Electronic energy + Delta-G solvation = -21490.191808 eV Core-core repulsion = 18231.177496 eV Total energy + Delta-G solvation = -3259.014312 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.85765 -39.24380 -38.21156 -37.01210 -34.23929 -34.08585 -32.06332 -31.73730 -29.67509 -27.41713 -27.17399 -23.82315 -23.17124 -22.60347 -21.29990 -19.96991 -18.71604 -18.25020 -17.77085 -17.23111 -16.86264 -16.68011 -16.44754 -15.88965 -15.39404 -15.19423 -15.10804 -14.90699 -14.62798 -14.44647 -14.15467 -14.03568 -13.71606 -13.50521 -13.21465 -12.94690 -12.69323 -12.61979 -12.48062 -12.09807 -11.99725 -11.91529 -11.32023 -10.95839 -10.92510 -10.79445 -10.26814 -9.68407 -8.92406 -8.72550 -8.56657 -6.58077 0.35163 0.37598 0.51208 1.21611 1.28202 1.37912 1.46191 1.68926 2.10240 2.40676 2.69251 3.05443 3.41053 3.67878 3.75096 4.01997 4.08917 4.14476 4.17028 4.26268 4.37487 4.46143 4.56864 4.60535 4.64866 4.75246 4.81649 4.84422 4.95953 5.19761 5.21806 5.45058 5.54418 5.63315 5.70187 5.91604 5.96388 6.34219 6.75571 6.88318 7.09963 7.41887 8.44254 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.020374 B = 0.004748 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.943656 B = 5895.449481 C = 6795.497022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.074 4.074 3 H 0.089 0.911 4 C 0.106 3.894 5 O -0.580 6.580 6 S -0.207 6.207 7 C -0.084 4.084 8 C 0.507 3.493 9 O -0.554 6.554 10 N -0.417 5.417 11 C -0.364 4.364 12 H 0.092 0.908 13 C 0.060 3.940 14 N -0.885 5.885 15 Si 0.916 3.084 16 H -0.237 1.237 17 H -0.290 1.290 18 H -0.279 1.279 19 C 0.130 3.870 20 C -0.181 4.181 21 C -0.105 4.105 22 C -0.156 4.156 23 C -0.104 4.104 24 C -0.204 4.204 25 H 0.076 0.924 26 H 0.046 0.954 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.402 0.598 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.285 0.715 34 H 0.120 0.880 35 H 0.144 0.856 36 H 0.155 0.845 37 H 0.147 0.853 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.875 -7.199 6.244 9.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.203 4.203 3 H 0.107 0.893 4 C 0.027 3.973 5 O -0.390 6.390 6 S 0.019 5.981 7 C -0.234 4.234 8 C 0.298 3.702 9 O -0.437 6.437 10 N -0.127 5.127 11 C -0.491 4.491 12 H 0.110 0.890 13 C -0.148 4.148 14 N -0.520 5.520 15 Si 0.742 3.258 16 H -0.161 1.161 17 H -0.218 1.218 18 H -0.204 1.204 19 C 0.034 3.966 20 C -0.201 4.201 21 C -0.124 4.124 22 C -0.175 4.175 23 C -0.122 4.122 24 C -0.223 4.223 25 H 0.094 0.906 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.253 0.747 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.095 0.905 34 H 0.138 0.862 35 H 0.162 0.838 36 H 0.172 0.828 37 H 0.165 0.835 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.365 -8.049 5.736 10.163 hybrid contribution -0.018 1.494 -0.098 1.498 sum 2.347 -6.554 5.638 8.959 Atomic orbital electron populations 1.21892 0.92307 1.03181 1.01993 1.23206 1.00256 1.02415 0.94408 0.89287 1.21623 0.96934 0.95421 0.83296 1.86404 1.73377 1.62207 1.16971 1.86897 1.78952 1.32627 0.99651 1.23147 1.06576 1.01326 0.92400 1.20428 0.78958 0.84838 0.85974 1.90258 1.42954 1.23948 1.86545 1.41391 1.51525 1.17235 1.02599 1.18842 1.11594 0.83327 1.35319 0.89026 1.25823 0.98210 0.94122 0.96648 1.69683 1.40887 1.01229 1.40188 0.86307 0.80374 0.76940 0.82165 1.16093 1.21783 1.20440 1.18723 0.97252 0.93736 0.86858 1.21042 1.04025 1.02729 0.92350 1.21257 0.98416 0.95941 0.96755 1.21418 1.00029 0.96740 0.99291 1.21442 0.99083 1.00086 0.91630 1.22765 1.01095 0.96390 1.02089 0.90564 0.93451 0.91346 0.92051 0.91851 0.74668 0.86997 0.86933 0.90496 0.86196 0.83791 0.82754 0.83488 0.81867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 8.88 71.98 0.64 -2.76 16 2 C -0.07 -1.93 3.14 30.59 0.10 -1.84 16 3 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 4 C 0.11 2.18 6.55 71.98 0.47 2.65 16 5 O -0.58 -10.70 12.88 -148.98 -1.92 -12.62 16 6 S -0.21 -6.91 20.27 -56.49 -1.14 -8.06 16 7 C -0.08 -3.25 5.10 71.24 0.36 -2.89 16 8 C 0.51 23.34 7.59 87.66 0.67 24.01 16 9 O -0.55 -26.45 12.29 -3.04 -0.04 -26.49 16 10 N -0.42 -20.35 2.30 -458.90 -1.06 -21.41 16 11 C -0.36 -18.63 8.01 84.02 0.67 -17.96 16 12 H 0.09 4.90 7.69 -2.91 -0.02 4.88 16 13 C 0.06 3.08 4.61 84.91 0.39 3.47 16 14 N -0.89 -47.32 13.96 21.65 0.30 -47.02 16 15 Si 0.92 43.03 23.85 68.60 1.64 44.66 16 16 H -0.24 -10.38 6.14 99.48 0.61 -9.77 16 17 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 18 H -0.28 -14.08 6.48 99.48 0.65 -13.43 16 19 C 0.13 6.09 4.13 38.22 0.16 6.25 16 20 C -0.18 -7.93 5.58 22.40 0.12 -7.80 16 21 C -0.11 -3.75 9.76 22.25 0.22 -3.53 16 22 C -0.16 -4.93 10.04 22.30 0.22 -4.70 16 23 C -0.10 -3.62 10.04 22.25 0.22 -3.40 16 24 C -0.20 -8.86 9.03 22.41 0.20 -8.66 16 25 H 0.08 1.80 7.73 -2.39 -0.02 1.78 16 26 H 0.05 1.28 6.87 -2.39 -0.02 1.26 16 27 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.40 3.33 9.12 -74.06 -0.68 2.65 16 31 H 0.11 4.32 8.14 -2.39 -0.02 4.30 16 32 H 0.11 4.20 6.60 -2.39 -0.02 4.19 16 33 H 0.28 14.24 8.31 -92.70 -0.77 13.47 16 34 H 0.12 5.64 5.70 -2.91 -0.02 5.62 16 35 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 36 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 37 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16 38 H 0.16 7.57 4.59 -58.20 -0.27 7.30 16 Total: -1.00 -62.74 319.22 2.22 -60.51 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: -0.01 Total: 27.56 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: 4.45 Total: -17.15 kcal Atomic # 7 Polarization: -67.67 SS G_CDS: -0.75 Total: -68.42 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -1.96 Total: -39.10 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.64 Total: 44.66 kcal Atomic # 16 Polarization: -6.91 SS G_CDS: -1.14 Total: -8.06 kcal Total: -62.74 2.22 -60.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079091557.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.965 kcal (2) G-P(sol) polarization free energy of solvation -62.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds